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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062726 ID=TCONS_00062726|Name=TCONS_00062726|organism=Clytia hemisphaerica|type=transcript|length=825bp
ttttcagtatgaaaatatataagaaattataaaacaaaagaaatacaaaA
TCAAGATGGCAGCACCAGGTTATGGGTCACGTCAGCAAATGCACGGTAAC
CGTGGCAACAATTACAATAATGGTAGATATGATGGTAACCAAGGAAACTT
TAGAAATCATGGCAACGGCAATGACCattttcgaaacgacggtaacCGAA
GGAATTTTACAAACAATGGCGACCCTTTTCGAAACAATAGTGACCCTTAT
CGAGACAATGAAGGTCGCCAGGGAAACATAAATGACCCATTTCGTGAAGA
TAATAACAAAGAACATTATAGTAACCATGAAAATTTTATAAACGATAGTG
ACCCTTATCGTAACGATGGTAACCAAGGAAATTTCCATGGAAACCAAACT
GGTAACTATGGGCAAGAACATGACAATAGATTTGTGAACTCCAATGAAGG
ACACTTCAATGCacaatatgaaaataatttcagaGGAGAAGATGATTTTA
GTCACCCGAAGTTGAGAGGAGGTCGCGTTTCTCCAAGACTTGACAAACCT
GAGCACAGATCTTACGACGAGGTCGTGGGACGTGATTACAATTCACGGTC
ACCCGATCGTCGCCAAGAAAGACGTCGTGGAGACTACGATCGTGACTACA
GCTCCCGTCGCCGTCGCTCACGTACTCGTTCCAGATCGCGAGAACGAAAT
TCATCGCGCTCCTCACGTAATCGTTCGCGTTCTAGAGAGAGAAGACGTGA
ACGGTCACCAGGCTACAGACACGAACGTGATGATTCGAGGGATCGAAGGG
CCAGTCGCTATGAAAGAGAAGTAAg Run BLAST on NCBI protein sequence of TCONS_00062726-protein >TCONS_00062726-protein ID=TCONS_00062726-protein|Name=TCONS_00062726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=256bp
MAAPGYGSRQQMHGNRGNNYNNGRYDGNQGNFRNHGNGNDHFRNDGNRRN
FTNNGDPFRNNSDPYRDNEGRQGNINDPFREDNNKEHYSNHENFINDSDP
YRNDGNQGNFHGNQTGNYGQEHDNRFVNSNEGHFNAQYENNFRGEDDFSH
PKLRGGRVSPRLDKPEHRSYDEVVGRDYNSRSPDRRQERRRGDYDRDYSS
RRRRSRTRSRSRERNSSRSSRNRSRSRERRRERSPGYRHERDDSRDRRAS
RYEREV Run BLAST on NCBI transcript from alignment at scaffold_371:211994..213198- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062726 ID=TCONS_00062726|Name=TCONS_00062726|organism=Clytia hemisphaerica|type=transcript|length=1205bp|location=Sequence derived from alignment at scaffold_371:211994..213198- (Clytia hemisphaerica)
TTTTCAGTATGAAAATATATAAGAAATTATAAAACAAAAGAAATACAAAA
TCAAGATGGCAGCACCAGGTTATGGGTCACGTCAGCAAATGCACGGTAAC
CGTGGCAACAATTACAATAATGGTAGATATGATGGTAACCAAGGAAACTT
TAGAAATCATGGCAACGGCAATGACCATTTTCGAAACGACGGTAACCGAA
GGAATTTTACAAACAATGGCGACCCTTTTCGAAACAATAGTGACCCTTAT
CGAGACAATGAAGGTCGCCAGGGAAACATAAATGACCCATTTCGTGAAGA
TAATAACAAAGAACATTATAGTAACCATGAAAATTTTATAAACGATAGTG
ACCCTTATCGTAACGATGGTAACCAAGGAAATTTCCATGGAAACCAAACT
GGTAACTATGGGCAAGAACATGACAATAGATTTGTGAACTCCAATGAAGG
ACACTTCAATGCACAATATGAAAATAATTTCAGAGGAGAAGATGATTTTA
GTCACCCGAAGTTGAGAGGAGGTACAATCAACTCTCTCTAATTCGAACCT
CTATAATTCGAATCTTTCTGTAATTCGAACTAAACAATATTCTCCTTAGC
TGGAAAGAAGTGTAAACCTTCGAATCTTTCTGTAATTCGAATTAAAACAA
TATTCTCCTTAGCTGGAAAGTAGTGTAAACCTTCGAATCTTTCTTCGAAG
AAAAGTCTTACTTCCTTGTAGATCGAATTAGAGGGAGGCAACTGTAAGAG
CAATCCTTAGCTAGATTTCTCAAAAAAGTGGCTGAACAACCTGAAATTCT
TCTATTGGGATATTTATGTTTTACCATGAAATTCAATAACTTTTAATTTA
GATATCTTGAATTGGCTGCATGAGCTAATATAATTTCTTAATCTTCTTAA
GGTCGCGTTTCTCCAAGACTTGACAAACCTGAGCACAGATCTTACGACGA
GGTCGTGGGACGTGATTACAATTCACGGTCACCCGATCGTCGCCAAGAAA
GACGTCGTGGAGACTACGATCGTGACTACAGCTCCCGTCGCCGTCGCTCA
CGTACTCGTTCCAGATCGCGAGAACGAAATTCATCGCGCTCCTCACGTAA
TCGTTCGCGTTCTAGAGAGAGAAGACGTGAACGGTCACCAGGCTACAGAC
ACGAACGTGATGATTCGAGGGATCGAAGGGCCAGTCGCTATGAAAGAGAA
GTAAG Coding sequence (CDS) from alignment at scaffold_371:211994..213198- >TCONS_00062726 ID=TCONS_00062726|Name=TCONS_00062726|organism=Clytia hemisphaerica|type=CDS|length=1536bp|location=Sequence derived from alignment at scaffold_371:211994..213198- (Clytia hemisphaerica)
GTCGCGTTTCTCCAAGACTTGACAAACCTGAGCACAGATCTTACGACGAG
GTCGTGGGACGTGATTACAATTCACGGTCACCCGATCGTCGCCAAGAAAG
ACGTCGTGGAGACTACGATCGTGACTACAGCTCCCGTCGCCGTCGCTCAC
GTACTCGTTCCAGATCGCGAGAACGAAATTCATCGCGCTCCTCACGTAAT
CGTTCGCGTTCTAGAGAGAGAAGACGTGAACGGTCACCAGGCTACAGACA
CGAACGTGATGATTCGAGGGATCGAAGGGCCAGTCGCTATGAAAGAGAAG
TAATGGCAGCACCAGGTTATGGGTCACGTCAGCAAATGCACGGTAACCGT
GGCAACAATTACAATAATGGTAGATATGATGGTAACCAAGGAAACTTTAG
AAATCATGGCAACGGCAATGACCATTTTCGAAACGACGGTAACCGAAGGA
ATTTTACAAACAATGGCGACCCTTTTCGAAACAATAGTGACCCTTATCGA
GACAATGAAGGTCGCCAGGGAAACATAAATGACCCATTTCGTGAAGATAA
TAACAAAGAACATTATAGTAACCATGAAAATTTTATAAACGATAGTGACC
CTTATCGTAACGATGGTAACCAAGGAAATTTCCATGGAAACCAAACTGGT
AACTATGGGCAAGAACATGACAATAGATTTGTGAACTCCAATGAAGGACA
CTTCAATGCACAATATGAAAATAATTTCAGAGGAGAAGATGATTTTAGTC
ACCCGAAGTTGAGAGGAGGTCGCGTTTCTCCAAGACTTGACAAACCTGAG
CACAGATCTTACGACGAGGTCGTGGGACGTGATTACAATTCACGGTCACC
CGATCGTCGCCAAGAAAGACGTCGTGGAGACTACGATCGTGACTACAGCT
CCCGTCGCCGTCGCTCACGTACTCGTTCCAGATCGCGAGAACGAAATTCA
TCGCGCTCCTCACGTAATCGTTCGCGTTCTAGAGAGAGAAGACGTGAACG
GTCACCAGGCTACAGACACGAACGTGATGATTCGAGGGATCGAAGGGCCA
GTCGCTATGAAAGAGAAGTAATGGCAGCACCAGGTTATGGGTCACGTCAG
CAAATGCACGGTAACCGTGGCAACAATTACAATAATGGTAGATATGATGG
TAACCAAGGAAACTTTAGAAATCATGGCAACGGCAATGACCATTTTCGAA
ACGACGGTAACCGAAGGAATTTTACAAACAATGGCGACCCTTTTCGAAAC
AATAGTGACCCTTATCGAGACAATGAAGGTCGCCAGGGAAACATAAATGA
CCCATTTCGTGAAGATAATAACAAAGAACATTATAGTAACCATGAAAATT
TTATAAACGATAGTGACCCTTATCGTAACGATGGTAACCAAGGAAATTTC
CATGGAAACCAAACTGGTAACTATGGGCAAGAACATGACAATAGATTTGT
GAACTCCAATGAAGGACACTTCAATGCACAATATGAAAATAATTTCAGAG
GAGAAGATGATTTTAGTCACCCGAAGTTGAGAGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062726-exon-scaffold_371-1575043694:212678..213198 | TCONS_00062726-exon-scaffold_371-1575043694:212678..213198 | Clytia hemisphaerica | exon |
| TCONS_00062726-exon-scaffold_371-1575043694:211994..212297 | TCONS_00062726-exon-scaffold_371-1575043694:211994..212297 | Clytia hemisphaerica | exon |
| TCONS_00062726-exon-scaffold_371-1510915933:212678..213198 | TCONS_00062726-exon-scaffold_371-1510915933:212678..213198 | Clytia hemisphaerica | exon |
| TCONS_00062726-exon-scaffold_371-1510915933:211994..212297 | TCONS_00062726-exon-scaffold_371-1510915933:211994..212297 | Clytia hemisphaerica | exon |
| TCONS_00062726-exon-scaffold_371-1491911889:212678..213198 | TCONS_00062726-exon-scaffold_371-1491911889:212678..213198 | Clytia hemisphaerica | exon |
| TCONS_00062726-exon-scaffold_371-1491911889:211994..212297 | TCONS_00062726-exon-scaffold_371-1491911889:211994..212297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_371 | supercontig | scaffold_371:211994..213198 - |
Blast
The following BLAST results are available for this feature:
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