|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062707 ID=TCONS_00062707|Name=TCONS_00062707|organism=Clytia hemisphaerica|type=transcript|length=2332bp
ATATTAAGCGGTACCTTTGTAGTATTTCTTTGTCGTAAAAAGCACCTGCG
AGGGAGCTCACAAAACACAAGATTTAGACTAACACATCAGTCTAGTCTTA
AATTCTTCTCCACAGAGGATATTCTTAGATTTAAATCTGATTTATTCACG
TCTCCGTCAAGAAAAGATCATTCAGGAACATAAAACGGTAGGGTTATAGG
ATGTCCCCCCTGGTCCCggatatcaaaacaaaccttttcaagACAGGATT
CTACATATCCAGGGGGACATCACTAATAACTAAATCCTGAAGAATAAGAT
TCAAGACATCATCGATATGTTGGATTTCAtgagaattttgttttgtttgg
gaTTTGTTGTAGTTGCTGTCATTGCAGAAGCTGAGACTCAGGATGACAAC
TTAGCCAAGCGGGTATCCCATCAAACTCATATCCCTGGGGACAAGTCACC
AGGACGTAAATTTATTCTTCACTTGCGTCCCCATGGCGATGAACAAACAA
AACAACGAAAGATGCTGCCCCTAAAGCGAGAAAATACTGCTGTCCCTGCT
GGTGATGATCTTTTTGCATCACGGTTTGGTAAGGAGGATGAGGATGCTGC
CGAGTCTACGTGGAGTGCCTGGAGAATGGGACGGGAAGCAGATACTGTGG
ACACCACCAAGAGGGTAAAGGATGCTGAGTCAGCATGGAGTGTTTGGAGG
ATGGGACGGGAAACGGATGGCACTACCACTGTAAAGGACGCCACCACGAG
GGAGCGAGATGCCTCTATCCCCAGCCATCCAAGATATCAAGTATTTAGGT
CAGGTCGAGAAGCCGAAAAGTCGCTTCCAATGTCAAGAGCATTTGGTGGA
AAAAGGGATTCACCCGGCGATGCTCCTATTCCTTATTATTACTCATTCAA
CAACGAAGGAAAAGATTTTTCGTGGAACATCTTTGGTAGAAAGAGAGCAG
CTGAGTCCGATCTTCCAATGTCCAGATTTGTCGATGGTCGAAAGAGGGAT
TTACCCATGGGAAGAACGTTTTCCAAACGGGAATCCAACCGCATGTTTTC
TCGTGCCGACGTTCCGTTTTTCGTCAAGCGAGGTTCAAACCTACCTATGA
ACAGAATGTTTTCTCGAAGTGCTGTTCCATACTTTGGAGAAGGAAAGAGA
GAATCGAATCATTTGCCAATGGGTattttttcaagagaaaaaacCAACGC
TGATGTTCCGTTTTATGTAAAACGTGCTTCAAGCCTTCCTCTCGGTCATA
TGTTCTCCAAAAGAGCCAATTTCCTCAACAATCGCCTACCAATGCAACTT
GGATTTAAACGAGCCTCAAATCTACCAATGACCAGAATGTTTTCCAAGAG
GGCGAGTCTACCAATGCTACTTGGAGTAGTCAAAAAGGAGCATGGTGGAT
TTGCACGAGCACCTGAATACAACTGGGGTCCAGCTTCCTTGAAATATCAC
CGCCGTAGCCTCCTTCCAATGATAATGCACGAAAGAAAAAGACGCTTCAA
TGGATTCAGACCAGTCGTAAGTGGAATTATCAATAATGACCGAAACCgta
aattgaaaaacaatgtCAATGACTTTCATGTTAAAAAACTTTGAGTATAA
TCCCATACGAAGCCTTTGGATGGTACACTGATTTCATGATCAGAATGAAT
ATAATGGAAACTTTAgatgttatgatttttattATTTCGAAGTTAGAGTT
TATTACGATGTTGGAGGAAGTGCGTCAATGCGCTACATAAACTATAGCCC
GTGGAGCCAGTTTCTCAATCACGgcaaagcaaaatattttgattgcagtt
tttttgaaagtggacGAAAGCGCTATATCTACTTGTCATTGTCTACAATG
ACTTTTGTGTGGTTAccgctttcaaaaaaaactccaatcaaagatggcgg
atatagcttggtccaagGTCTGTTAAAGGTCAATCGCTACATAATACCAA
TCATAttccaacctcgttccctgtgtattatcagctttttgatgcctact
gatagcgctagataatattctcCGGCGTTCATAGGTAttataaataaagc
ctggggtacacggggacgaggttgagttCTATTAAGTTCTAAATCAAGCC
TCGTGTTctcaaattattcttataatagaaaaagctaaaaaaatcgTGTT
GTAGGATTGAAAAATGATGAATCTCAAATATTTGTTATCgtaacattttc
ataattttcgcatgaaattttaggttttctcatttttacttATCATCTTT
GTATGTGTGACAAATTATAGTCCgtataaatattttcttaataAAGGGGT
AATGAAttaaagaaatatattttatgtttatg Run BLAST on NCBI protein sequence of TCONS_00062707-protein >TCONS_00062707-protein ID=TCONS_00062707-protein|Name=TCONS_00062707-protein|organism=Clytia hemisphaerica|type=polypeptide|length=425bp
MLDFMRILFCLGFVVVAVIAEAETQDDNLAKRVSHQTHIPGDKSPGRKFI
LHLRPHGDEQTKQRKMLPLKRENTAVPAGDDLFASRFGKEDEDAAESTWS
AWRMGREADTVDTTKRVKDAESAWSVWRMGRETDGTTTVKDATTRERDAS
IPSHPRYQVFRSGREAEKSLPMSRAFGGKRDSPGDAPIPYYYSFNNEGKD
FSWNIFGRKRAAESDLPMSRFVDGRKRDLPMGRTFSKRESNRMFSRADVP
FFVKRGSNLPMNRMFSRSAVPYFGEGKRESNHLPMGIFSREKTNADVPFY
VKRASSLPLGHMFSKRANFLNNRLPMQLGFKRASNLPMTRMFSKRASLPM
LLGVVKKEHGGFARAPEYNWGPASLKYHRRSLLPMIMHERKRRFNGFRPV
VSGIINNDRNRKLKNNVNDFHVKKL Run BLAST on NCBI transcript from alignment at scaffold_371:585179..588986+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062707 ID=TCONS_00062707|Name=TCONS_00062707|organism=Clytia hemisphaerica|type=transcript|length=3808bp|location=Sequence derived from alignment at scaffold_371:585179..588986+ (Clytia hemisphaerica)
ATATTAAGCGGTACCTTTGTAGTATTTCTTTGTCGTAAAAAGCACCTGCG
AGGGAGCTCACAAAACACAAGATTTAGACTAACACATCAGTCTAGTCTTA
AATTCTTCTCCACAGAGGATATTCTTAGATTTAAATCTGATTTATTCACG
TCTCCGTCAAGAAAAGATCATTCAGGAACATAAAACGGTAGGGTTATAGG
ATGTCCCCCCTGGTCCCggatatcaaaacaaaccttttcaagACAGGATT
CTACATATCCAGGGGGTAAGTGGTGAAGTCATAAAGATGTTCAAAACCAC
CCGCTTTGTGAAGAGGTGTGGGAAATAAAGAGTCACTAACCTAGCGCCTC
TTTGTGCAATGGAAATTGATATTTAATTAAACCAGGGGGTCTTTTTCCGA
TCGAAAGATATCCTGTAGTTATTATTTCTTCACTCTGAAGAGAAtcgatt
tatttttgaataaataaaataaaggtGTTTTGCCAAACATTTAGTTGGTC
ATTGGTGTAGGTATCCAAGGTCAAAATCTTATCACATTCAGACATTTATT
TTAGCCTTCTGTCTATATATTTTATCTTATCTCTAAAGAGATTGTGTAAC
AAGGGTGCTGTGGTTTGTAGAGGGTTGTACATAAGGACCACTTTGAGTAC
TTGGAATAGAAATCGAAATCTATTTGGAGAAAACCTACCTATTGAAAATA
TAAGctctaaataaaaaatgttttcgatTTATTTGACCTGGAAATTTTCC
TAGACTCATTTCTTTTGCTCTTGTGACCTAGAAGTAGTGTGGTGATGata
atcttttttgaaagtagGCTGCACAAATTTCGGAATAGTTTTTGCAATCC
GCTTTGGAAAACCACTACACAAAATCTACTGACGGGATTTTCGAGCTCGA
TATGCATAACCTATAACAAAACATTTTGGCGATTTATATAACATAAatac
aaattttgaattcaaattaaATAGAGTGGGTAGGCCAGCTGGTGGATGAC
GGGGTTAGTTGGCAGGTGCGCTACTTGGAACCCAGGGGAGAATAATAATA
CCAATTTCAAACCAATATCATTTTGTCTATTGATTTCATATCCTTTATTC
TGATTGAACAACTTCTTACAACTCGTAAAATCTGCATTTTCGTGGACTTT
GGTGAAAAGACGTCGATGAAGATGAATTCTAAAACGAATTTCAATGAATT
AAAGTGGGTAGGCCAGCTGGTGGACGGGGTTGGTTCTCGGGAAAAAtaac
ttcaaagaaaaattttataaagcgaatttcaatgttttcttaTTACAGGA
CATCACTAATAACTAAATCCTGAAGAATAAGATTCAAGACATCATCGATA
TGTTGGATTTCAtgagaattttgttttgtttgggaTTTGTTGTAGTTGCT
GTCATTGCAGAAGCTGAGACTCAGGTACATAATTTTCCGCATCATTTCCA
AACTTACCATCATTTTGTATATAAGATTTCCATTTCTGCACTTAGActcc
tttgccacttttctatGGGAAGACTCCGGGTAGCTGAAAAATAATGAGCT
TTATAAAGTTAAGCGCTATTAGTATCATTCACAAGGGAACTAAGGggctg
ggttcgagtttgtgaatccgttagtggatgcaagTAACCTCGTAGGGTTT
TTGAGATAGTTCACAGATGAATTTCCGTTATGTCGACATACTCTTTACCG
GAACTTTTTACTGGTTTTACTTTAGGGTTATGATAGTCAGCAGATCTTCT
AATATGGAAGGTTAAGCTGACGCAAATTTTTGACCTCTTTAAAGATTTAT
ACTCCTTAATAACGGGCTAAGTCATTAAATAATTTCGATTAACGTACAAC
TTTTTTTCACGCCAAAGGATGACAACTTAGCCAAGCGGGTATCCCATCAA
ACTCATATCCCTGGGGACAAGTCACCAGGACGTAAATTTATTCTTCACTT
GCGTCCCCATGGCGATGAACAAACAAAACAACGAAAGATGCTGCCCCTAA
AGCGAGAAAATACTGCTGTCCCTGCTGGTGATGATCTTTTTGCATCACGG
TTTGGTAAGGAGGATGAGGATGCTGCCGAGTCTACGTGGAGTGCCTGGAG
AATGGGACGGGAAGCAGATACTGTGGACACCACCAAGAGGGTAAAGGATG
CTGAGTCAGCATGGAGTGTTTGGAGGATGGGACGGGAAACGGATGGCACT
ACCACTGTAAAGGACGCCACCACGAGGGAGCGAGATGCCTCTATCCCCAG
CCATCCAAGATATCAAGTATTTAGGTCAGGTCGAGAAGCCGAAAAGTCGC
TTCCAATGTCAAGAGCATTTGGTGGAAAAAGGGATTCACCCGGCGATGCT
CCTATTCCTTATTATTACTCATTCAACAACGAAGGAAAAGATTTTTCGTG
GAACATCTTTGGTAGAAAGAGAGCAGCTGAGTCCGATCTTCCAATGTCCA
GATTTGTCGATGGTCGAAAGAGGGATTTACCCATGGGAAGAACGTTTTCC
AAACGGGAATCCAACCGCATGTTTTCTCGTGCCGACGTTCCGTTTTTCGT
CAAGCGAGGTTCAAACCTACCTATGAACAGAATGTTTTCTCGAAGTGCTG
TTCCATACTTTGGAGAAGGAAAGAGAGAATCGAATCATTTGCCAATGGGT
attttttcaagagaaaaaacCAACGCTGATGTTCCGTTTTATGTAAAACG
TGCTTCAAGCCTTCCTCTCGGTCATATGTTCTCCAAAAGAGCCAATTTCC
TCAACAATCGCCTACCAATGCAACTTGGATTTAAACGAGCCTCAAATCTA
CCAATGACCAGAATGTTTTCCAAGAGGGCGAGTCTACCAATGCTACTTGG
AGTAGTCAAAAAGGAGCATGGTGGATTTGCACGAGCACCTGAATACAACT
GGGGTCCAGCTTCCTTGAAATATCACCGCCGTAGCCTCCTTCCAATGATA
ATGCACGAAAGAAAAAGACGCTTCAATGGATTCAGACCAGTCGTAAGTGG
AATTATCAATAATGACCGAAACCgtaaattgaaaaacaatgtCAATGACT
TTCATGTTAAAAAACTTTGAGTATAATCCCATACGAAGCCTTTGGATGGT
ACACTGATTTCATGATCAGAATGAATATAATGGAAACTTTAgatgttatg
atttttattATTTCGAAGTTAGAGTTTATTACGATGTTGGAGGAAGTGCG
TCAATGCGCTACATAAACTATAGCCCGTGGAGCCAGTTTCTCAATCACGg
caaagcaaaatattttgattgcagtttttttgaaagtggacGAAAGCGCT
ATATCTACTTGTCATTGTCTACAATGACTTTTGTGTGGTTAccgctttca
aaaaaaactccaatcaaagatggcggatatagcttggtccaagGTCTGTT
AAAGGTCAATCGCTACATAATACCAATCATAttccaacctcgttccctgt
gtattatcagctttttgatgcctactgatagcgctagataatattctcCG
GCGTTCATAGGTAttataaataaagcctggggtacacggggacgaggttg
agttCTATTAAGTTCTAAATCAAGCCTCGTGTTctcaaattattcttata
atagaaaaagctaaaaaaatcgTGTTGTAGGATTGAAAAATGATGAATCT
CAAATATTTGTTATCgtaacattttcataattttcgcatgaaattttagg
ttttctcatttttacttATCATCTTTGTATGTGTGACAAATTATAGTCCg
tataaatattttcttaataAAGGGGTAATGAAttaaagaaatatatttta
tgtttatg Coding sequence (CDS) from alignment at scaffold_371:585179..588986+ >TCONS_00062707 ID=TCONS_00062707|Name=TCONS_00062707|organism=Clytia hemisphaerica|type=CDS|length=2556bp|location=Sequence derived from alignment at scaffold_371:585179..588986+ (Clytia hemisphaerica)
ATGTTGGATTTCAtgagaattttgttttgtttgggaTTTGTTGTAGTTGC
TGTCATTGCAGAAGCTGAGACTCAGGATGACAACTTAGCCAAGCGGGTAT
CCCATCAAACTCATATCCCTGGGGACAAGTCACCAGGACGTAAATTTATT
CTTCACTTGCGTCCCCATGGCGATGAACAAACAAAACAACGAAAGATGCT
GCCCCTAAAGCGAGAAAATACTGCTGTCCCTGCTGGTGATGATCTTTTTG
CATCACGGTTTGGTAAGGAGGATGAGGATGCTGCCGAGTCTACGTGGAGT
GCCTGGAGAATGGGACGGGAAGCAGATACTGTGGACACCACCAAGAGGGT
AAAGGATGCTGAGTCAGCATGGAGTGTTTGGAGGATGGGACGGGAAACGG
ATGGCACTACCACTGTAAAGGACGCCACCACGAGGGAGCGAGATGCCTCT
ATCCCCAGCCATCCAAGATATCAAGTATTTAGGTCAGGTCGAGAAGCCGA
AAAGTCGCTTCCAATGTCAAGAGCATTTGGTGGAAAAAGGGATTCACCCG
GCGATGCTCCTATTCCTTATTATTACTCATTCAACAACGAAGGAAAAGAT
TTTTCGTGGAACATCTTTGGTAGAAAGAGAGCAGCTGAGTCCGATCTTCC
AATGTCCAGATTTGTCGATGGTCGAAAGAGGGATTTACCCATGGGAAGAA
CGTTTTCCAAACGGGAATCCAACCGCATGTTTTCTCGTGCCGACGTTCCG
TTTTTCGTCAAGCGAGGTTCAAACCTACCTATGAACAGAATGTTTTCTCG
AAGTGCTGTTCCATACTTTGGAGAAGGAAAGAGAGAATCGAATCATTTGC
CAATGGGTattttttcaagagaaaaaacCAACGCTGATGTTCCGTTTTAT
GTAAAACGTGCTTCAAGCCTTCCTCTCGGTCATATGTTCTCCAAAAGAGC
CAATTTCCTCAACAATCGCCTACCAATGCAACTTGGATTTAAACGAGCCT
CAAATCTACCAATGACCAGAATGTTTTCCAAGAGGGCGAGTCTACCAATG
CTACTTGGAGTAGTCAAAAAGGAGCATGGTGGATTTGCACGAGCACCTGA
ATACAACTGGGGTCCAGCTTCCTTGAAATATCACCGCCGTAGCCTCCTTC
CAATGATAATGCACGAAAGAAAAAGACGCTTCAATGGATTCAGACCAGTC
GTAAGTGGAATTATCAATAATGACCGAAACCgtaaattgaaaaacaatgt
CAATGACTTTCATGTTAAAAAACTTTGAATGTTGGATTTCAtgagaattt
tgttttgtttgggaTTTGTTGTAGTTGCTGTCATTGCAGAAGCTGAGACT
CAGGATGACAACTTAGCCAAGCGGGTATCCCATCAAACTCATATCCCTGG
GGACAAGTCACCAGGACGTAAATTTATTCTTCACTTGCGTCCCCATGGCG
ATGAACAAACAAAACAACGAAAGATGCTGCCCCTAAAGCGAGAAAATACT
GCTGTCCCTGCTGGTGATGATCTTTTTGCATCACGGTTTGGTAAGGAGGA
TGAGGATGCTGCCGAGTCTACGTGGAGTGCCTGGAGAATGGGACGGGAAG
CAGATACTGTGGACACCACCAAGAGGGTAAAGGATGCTGAGTCAGCATGG
AGTGTTTGGAGGATGGGACGGGAAACGGATGGCACTACCACTGTAAAGGA
CGCCACCACGAGGGAGCGAGATGCCTCTATCCCCAGCCATCCAAGATATC
AAGTATTTAGGTCAGGTCGAGAAGCCGAAAAGTCGCTTCCAATGTCAAGA
GCATTTGGTGGAAAAAGGGATTCACCCGGCGATGCTCCTATTCCTTATTA
TTACTCATTCAACAACGAAGGAAAAGATTTTTCGTGGAACATCTTTGGTA
GAAAGAGAGCAGCTGAGTCCGATCTTCCAATGTCCAGATTTGTCGATGGT
CGAAAGAGGGATTTACCCATGGGAAGAACGTTTTCCAAACGGGAATCCAA
CCGCATGTTTTCTCGTGCCGACGTTCCGTTTTTCGTCAAGCGAGGTTCAA
ACCTACCTATGAACAGAATGTTTTCTCGAAGTGCTGTTCCATACTTTGGA
GAAGGAAAGAGAGAATCGAATCATTTGCCAATGGGTattttttcaagaga
aaaaacCAACGCTGATGTTCCGTTTTATGTAAAACGTGCTTCAAGCCTTC
CTCTCGGTCATATGTTCTCCAAAAGAGCCAATTTCCTCAACAATCGCCTA
CCAATGCAACTTGGATTTAAACGAGCCTCAAATCTACCAATGACCAGAAT
GTTTTCCAAGAGGGCGAGTCTACCAATGCTACTTGGAGTAGTCAAAAAGG
AGCATGGTGGATTTGCACGAGCACCTGAATACAACTGGGGTCCAGCTTCC
TTGAAATATCACCGCCGTAGCCTCCTTCCAATGATAATGCACGAAAGAAA
AAGACGCTTCAATGGATTCAGACCAGTCGTAAGTGGAATTATCAATAATG
ACCGAAACCgtaaattgaaaaacaatgtCAATGACTTTCATGTTAAAAAA
CTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062707-exon-scaffold_371-1491911889:585179..585443 | TCONS_00062707-exon-scaffold_371-1491911889:585179..585443 | Clytia hemisphaerica | exon |
| TCONS_00062707-exon-scaffold_371-1510915933:585179..585443 | TCONS_00062707-exon-scaffold_371-1510915933:585179..585443 | Clytia hemisphaerica | exon |
| TCONS_00062707-exon-scaffold_371-1575043694:585179..585443 | TCONS_00062707-exon-scaffold_371-1575043694:585179..585443 | Clytia hemisphaerica | exon |
| TCONS_00062707-exon-scaffold_371-1491911889:586477..586602 | TCONS_00062707-exon-scaffold_371-1491911889:586477..586602 | Clytia hemisphaerica | exon |
| TCONS_00062707-exon-scaffold_371-1510915933:586477..586602 | TCONS_00062707-exon-scaffold_371-1510915933:586477..586602 | Clytia hemisphaerica | exon |
| TCONS_00062707-exon-scaffold_371-1575043694:586477..586602 | TCONS_00062707-exon-scaffold_371-1575043694:586477..586602 | Clytia hemisphaerica | exon |
| TCONS_00062707-exon-scaffold_371-1491911889:587046..588986 | TCONS_00062707-exon-scaffold_371-1491911889:587046..588986 | Clytia hemisphaerica | exon |
| TCONS_00062707-exon-scaffold_371-1510915933:587046..588986 | TCONS_00062707-exon-scaffold_371-1510915933:587046..588986 | Clytia hemisphaerica | exon |
| TCONS_00062707-exon-scaffold_371-1575043694:587046..588986 | TCONS_00062707-exon-scaffold_371-1575043694:587046..588986 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_371 | supercontig | scaffold_371:585179..588986 + |
Blast
The following BLAST results are available for this feature:
|
