TCONS_00062675 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062675
Unique NameTCONS_00062675
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062675 ID=TCONS_00062675|Name=TCONS_00062675|organism=Clytia hemisphaerica|type=transcript|length=1628bp
AACTTTTTTATACTAATAATATAAACTTGTTAAAGTCtggattttaaact
tttattatagCCTCTGCCCTGACCCTTCTTTGCAGAGACTACTAATTTGC
ATGCTAAATAATCACGAAGTCGTGCGTTGCTAATGGTGGCCGATAAACAA
ATCTGcacaaaaagatcaaaaatcatcaaaatagtTGGCAGACAGTGGCA
GCCCTCACACCCAACCATACGCCAGACTTTTTACTTCACCAACCAAGCAC
TGGAGGGTCTTCCActtcaaagaaaaaacaacatacTTGTTTGAAACTTG
ACCAAACCAAGAACAATGTCATCGTCACAGTCGAAAAAAGATGCTTTAGA
AAAACTGGATAAAGATTATGATCAAACCATACCGGGAAACAGTGCCAAAA
CATCTGATTATTATACAGTTAAAAACATTCCAGACAGATTCAACAAACCA
GATTCGTTTAAAGGGTATGCCAAAAAGCAAGCACATCCAATGTATATGAC
TAGCGCAATGGAATACGGTAATCGTGAGCCAAGTGTCCACGTCATGCCTC
AGACGTTTCATGCCAAAAGTCAGAAATTCACCGAGCATCTTGGACAATGT
GGAATGTATAAAAACTATTCATTGAACACTTCTCTAGATAAGAATCCAGT
CTCCTCTCAACTCGatggtttattttgaaattgtaaatattttgttttaa
atgtatttttttaggtttttaaaaatgaatAGTCAAAGAATGAAGTAATA
AAGATAATTAGATGCGTGTGGAGCTTGATTACAGAAACACCTGTAGATAT
TATATCGTCGCTGTAGAATAAAAAGGAGTTATGTCCATTTTTGCTGTTTT
GAGATAATCGCATTTTAAGTATTTCAATACTTGCAGTGGAAGATTGAAGC
ACCTTTAAAGAGGCTATAGAGGTTTTTCTGTAAATTAAGCCTATCCTTGG
caatataataattttttttcagtggatTATTGTTGCTATCTGGCCCTTGC
AGGggccaactttttttttgttttccaaaATGGACATAAGGCTCAATAAA
AAGCCAAACTATTCAATTTTCTCACTACACAGTAAGGAAAATTGTGAACA
AAAAAAGACCTATGTCCAAATTTCATTGTGATTATTGTCATTGTGATTGG
ACATAACTCTTTCTTTTATTACATAGTCCATTCAATTATGGACATAAAGA
AAATTTATCTCAagagcaaaaaaatattataaaaaaatgaacaaaatttc
ttaaaatttattGCCTGGGGGAGccagaaaataataaaaacaaaaaattc
aaaaattggaCATAAGTCTTTTTTATTGTACAGCGACGAtatgcaacatt
tcaagcatTTTGTTTAGGTTTAGGCTGAATTCTAAGAATTGACTCGTaca
tttgataaattttataataATTGATTGTAAATAAAGATAAATCTCATCCT
TAATGAAAATCGATCGTCTTTGCTATTCTAAAAGTCCTTCTAAAATAGAC
TGTGGTTACCCATGGTCAGTTAAATTTTAATTACTTATTagtacttttga
tagaatttgcaTCAGCTAAATCGTATCATTCAGCCTCGTTCTCAACTTAA
AAGAATGAATAAAATCGAACCATTTACC
Run BLAST on NCBI

transcript from alignment at scaffold_371:277542..285930+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062675 ID=TCONS_00062675|Name=TCONS_00062675|organism=Clytia hemisphaerica|type=transcript|length=8389bp|location=Sequence derived from alignment at scaffold_371:277542..285930+ (Clytia hemisphaerica)
AACTTTTTTATACTAATAATATAAACTTGTTAAAGTCtggattttaaact tttattatagCCTCTGCCCTGACCCTTCTTTGCAGAGACTACTAATTTGC ATGCTAAATAATCACGAAGTCGTGCGTTGCTAATGGTGGCCGATAAACAA ATCTGcacaaaaagatcaaaaatcatcaaaatagtTGGCAGACAGTGGCA GCCCTCACACCCAACCATACGCCAGACTTTTTACTTCACCAACCAAGCAC TGGAGGGTCTTCCActtcaaagaaaaaacaacatacTTGTTTGAAACTTG ACCAAACCAAGAACAATGTCATCGTCACAGTCGAAAAAAGATGCTTTAGA AAAACTGGTAAGAGCaatatttcttattacaaaacGTTGGAATGTTGGTA TTTATGATATTAGATTTCTGTTAACTATGACTTTGAGAGCAATTTGGGAA AATAGCCAAAagtttattttgacatttttttgaaatggcAAGACCAAGAG CAGTAAAAAGTGATAGTCCAGCCAGCTTCTTGGTTCAGTTGATTGTCAAT TACGTTTCGATTGATCTACGATTATGTTAGATAAGTTTGattgcaataga ccttttttcaaagaggacgtcctgtttgaataattatgtagtccagctat aaaaacaatgatagagccatgcataattactgtatcatgcatattgtaat aattatgcatggttttatcattgtttttctgctggactacataattattc aacagggtggcctctttgaaaaaagatctATAGAcctcctttttttaaag aggcagccatgttgaatagaccttttttcaaagaggccaccctgttgaat aattatgtagtccagcagaaaaacaatgataaaaccatgcataattaata taatatgcatgatacagtaattatgcatggctctatcattgtttttatgg ctggactacatgattattcaacaggacgtcctctttgaaaaaaaggtCTN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaacaatgat acagccatgcataatttttaaaatatacatgatacagtaattatgcatgg ctgtatcattgtttttatgctggagtacataaatattcaacatggctgcc tctttaaaaaaaggtctattacagtAAATTGGCTCCTTTTTAAAGCTTAG CGTGGGTAGCCACCAATCAGCCAATACGCCATATTGGGGGGTCTGACCGG TGCCCACTACTACTGGTCTGGTTGGTCAGGGGTGGTATCTGAGGGTACAT GCCTGCATGGAAAAGAAGATTAGAGCAAGCGCATAAAAGTGCCGTACAAG AGTGAATATATAATTGAATCAATCAAGCATTATAGTAGAATACAATCAGA CTTTCCATCCCGTGATTTGCAAAACAGAAatgcgcgcattattttgatga tcTCTCACCATTTGGTCTCTGGAGATAAACAAACCCGTgccgaccttggc ttctgtgcaggaggccagggttcgattcccactcacggcagttcacttgg caagtgaacgttccttcgcccgggtcaacccatgccatgtgaggggaatt gggtagtcagttcaaggtgctgacaggaCGCTCagtagtaagcgtctata gttgcgagaataggcctctaaagcctcctgcaactcaaccaaatagaata gaaatagaaattccaTATGGGAAGTTggttttttaagcttttcttaagtt ctatcaatcaaaaccccctcaaattttaataaaccCCTACTATATCTACA ATCCAATTCTCAAAAGAACTTCTTCAAAAATCGTTCAAAGCTGCTGTAAA AATTGGTAAAGCGGGGGGTCCTGATAACATCACCGCTAAGGACCTATCTT TAAACCCGGNTGTGGATGAGTTTTTGACTTTGACCCAGAGCATTTATTCT CACTGAATACTTCGTTATCAGGTAGCTAGTTAAATGGATGATAGAGACAG CAAGCAGGATGATTATTTCGATGCTTTGGCATTATTCAATCCACTAGAGC GTGAATGTATTCAAAATATAGAAAGTGAGGAAAATTTGATGGAAAGACTA CAGGATCAGAAAGAAGCTGCCATTGAGCGGCTATGGTACACATTTCAAAG TGCTGCATCGTCACTTGCACAGCTACATAAAGGCAAGAAGAAAAcatatt gtttatattttttgagtgAATTTCAGCTTTCTGAAAGAATGAATGGATTT GGAACCCTCTGTGATGCCTACACTGCCCGTACTGCCCGTATTATGTTTGT ACGGGCTGTATGGGCGAGTCAACTTTATTTACAACCCGTACGTCCCATAC ATTTGTACAGGCTGAATGGGCAAGTCAACCTAATTTACATCAAACCCTgt attttcaaatataaaataaattgaCTACTATGCAGAATAGCCAAGCTTTT TAAAAATCCAAAGATATGAATTGCATAGCTTAATTACCAAAAAATAGTGC TTTGGGACACTGggattttctggaatggcccactGCGATTTTCagagtaa tgtttaaaaatcagGGAAATCCTTAATTAATGTTTGTAACACTGTAAGTG CTGTTCAGTTTCCTTAACTTTAAGGGACCCCATTTTCTGGCTCAATAAAA CCTTTATCAGTCAGTTGTTTAAGagaaaaactgcaattattgctcttttc ggaaattattgccgaaaacggcaattttttaacaatgaaatgctgaatca gcagaaaaataaaaaagtaaacaaaatgccttttttgcaaataaaaattg actttattattgaacacgtggtatttgacacccttgcgataagtaggccc actgtgcctcatttagttttgttttcaactggtctTTGTTGGCAGTgtat tgagcaacgaaaaattgaaaaatcacttttaaaaatccgaaaaacctttt tctcagtgcaattttactattttcaaacaccactgacatctttgcccttt aAAAAGGACAAcatattttgctgattcagcatttcatcgttgaaaaaatt gcctttttatGGCAATAATTGcagaaaagagcaataattgcagtttatat cttaaacacccgactgtttATGTGTACAATTTgaacgcaaaaaaaatttt caatcaaggttgcttaaaattggaaaatttgggaaatgtttgattttaga tccctcaaaatctCGCCATATCCCATGCAAGATACCTCAAAATCGGAAAC AGAATAATTCTTGATTAGGAAGGAGTAGTTAGTTTTATTGCTCTGTATCG GATAAagaaaaaatactatctttaaagatctttaatTTTTCTTCACAAGC AAAATTGGATATTATTTCAATCCAATTAAAGATCGCTGTGGGATCAGAAA ctgtcaaaaaccagctttttccaattttcatttagtCACAGGAACGAACA CGTACCTTCaaatttcccagaaaaaaatGTGTGCTCCACCGTTACGTATA TAAAAATGTGTTTGGGGGTAAACCAAACTGTAAACTATCTGTAATgcttg gtctctggaggtaaacaaataGCTGTTTTTGCCTGTGTTCCCTTAGGGGA GCTGTTTTTTAGCCAATTAATAAAACCCcctgaaattttaaaatgttctt tctatacatgatattgtaataccaccctgaaaagtttttgccaatttttg ctatcaaaagttagaagctggAAACCCCCTTTCCCTAATCTCTTGCAGGC AAAAACGCTttcgtttacctcccaaacaattttattcaGGGAAGTTTGAA TTACAGGAAAGATGTATTTGAATGGCatatcctgggtaatattcgattgt gtttgacaatcgaatcgtAATCGTTCAACTGCGTTTGATTGTGCTCAATT GATTTGGCGTTTGATTTGTTAAATTGACACTGTCTGGTCTATAGTGCATC TAGAAATCATCAACAGGACCGACAGGACCTATCCAAATTATTTACCTGAA GTTCCTGGTACATTTTTTATCCCCAGATGACGTCGTACAGGCCCAAGCTA actaaaaaattttcatgagAAAACATGACCACATCATATACCAAATGAAG GGTCTTTAAACATAGATTAAGGAAAGGTCATTAACCATAGCTGAGAGTTT CTCTATAAGAAGTTATGAAGGTTTCTTTAACGTCTGCTACCTCTCTTTTT ACCTGgtccgagaaatggcatttttaaggccaaaaatcgacgttttggac gtttttcgatgacgtcagcattttcctaggagcattttcagaaGAAATCA TTCCCATGATgactagatctcgagatattttggtttagatattgaaaatt atcaatattttttgctgagtcagcagtttttcaccATATTTACCCACCTT ACTAAAATGAATTATCTCAAGGTCTAGACACTAAAAcataacaaaccata ccatttttggaaaCTACAAActcagggctatccagccgtgggaatgattt ttctgaaaatgctcctaggaaaatgctgacgtcatcaaaaaacgtccaaa acgtcaaattttggccttaaaaatgccatttctctgcaccaggtggtcga aacttaacaaataaccccattttctttatctacttttcacactGAATCCA TTGGTAGCaacagatatttgattttcagacctcGAAAAAACTTGATAAGT TCTAGATCGATTTACTAAAAAttgattcactcgaaaacttaaggagattc gaagggcaaatttttttgtcgattctgcaccctattaggagcataatatc aaaaatttgccctgatctaaggggtgccctacaaagtgacacaattcact acctcggccgctggtctagtTGACAATTTTATAAAgtgtgtatttttttt aaaagaaggtGGAATACACCGTGTAAAGTTATTGCTCTAATAGTTTTTTC TGTAAGATTTAAATAATTTCACTTTTAGGATAAAGATTATGATCAAACCA TACCGGGAAACAGTGCCAAAACATCTGATTATTATACAGTTAAAAACATT CCAGACAGATTCAACAAACCAGGTAtagcaatttttttctttttttttcc cttaaccctttccgtgccgatgtcgtatatatccgacatgcaaattttca ctgtacttgccaatgtcggatatatccgacatcaaagttttttacctaat tgccgaggcctttaaaaaagagggagctctattgccgagaaatcagcttt taggaaaatggctttcttatttgccaatgtcgtatatatccgacataaaa aaatccaaatagtAATAGTGACAGTATATATTAAGTGCTCAAAAGATTTA TTTCAGGTTTATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNTTAGTCTatcataaaatatatataaaacaaatgtcaaatacaaatg tcaaacattggcaaataggaataaaatatccttgtcgtatatatacgaca tgcggCAACAGGAGTTAAAATttgcatgtcgtatatatacgacatcggca aatcaggttactaaaaaaaattacccctcggCAAATGGATTGAGGTACAA AAACAAGGTAACGGCACGCAAAGGGTtaagaaaacctttttttttctctt aaatattctttttcccttaaaaaaatgtttttgttaacTTTGTTAAATgt attttctgtttgaattttacatttttgctaaaataactcttgaaatattt catgagATTGCAGGTAAAAACTGTTTTCAGGTGTattattttttggcaaa aatttggcaTCTTCGAGGCTATTTTCAGCTTATTTCAATTCACGGCTCAc tgcaaaacttttcaaaacgcTGACTAAGAAAATAAATCCCAAAAGTTTGT TAAATTAATCTGATTGGAGCATTAATACATTGATTTAGACTGAAGGTATA TTATTTCTTGAGGTACAGTAGGGAATATTTTGTGTCACaaggtttttttt aaatgaaataagTGAACTACTTTCAAACTCTTTTCTTACAGAGTTACTGC CAAACATAGGGAATCCTGTCTTTACTTGTCCTATAACTGTCCAAGCTACT AATGAAAAGAGTATTGAAAATAAAGCAGACCAGGAAGGTCAGTGAATTAT TCAATACTTTTTGATAGAAGAAatccttttcattttctgaaagTCTCTAA TTGGGTAATCTGGGGTATAGGCTCTGCAAAGaatgaattgatttttttat taagaAGGTGGTTAATTTTCCGAAAGTATCATTTTGAAGCtgttataata ataataacattattcttttcattttgatctcaaatattttgaacaATTCA AAATAAACTAAGTATGAATTCAACATCATTTCACTTTATAATAAATGCCA GTCGGGTACAAAAGAATGGTGATGCTCTGTCCTAGGAATATTGGTTTTTC ATTAATCCTCTCGAAATCTGTCGAAATCTTAACAGaaaattttgtatgtt tttttcTCATCAGATTCGTTTAAAGGGTATGCCAAAAAGCAAGCACATCC AATGTATATGACTAGCGCAATGGAATACGGGTATGTGGCTTATAATTCTT AGGTTTTGTTCTTGTCTAAATCTGATATTTTACTTATATATCACAATATA TCTAAAATGTATTGTCAAAGTTAGATAAATCTCTGTATTTTTCAAACCCT GTAAAGTTTTCTTAAGATTGGCGTACCCAAGTGTTTACATCACCGTTTAT AGCATGTTTTGATAGTAAACTTTACTGTGTGTATTTGAATACGAATTTTA CCAGTGGTCTCTTTTGCAATGAAGTAAACCTTAAGGCCGTACTCCACTtt cgaaatgggcgacagtttttttcttaaccttttttacctgaagaaaaaat tacgtcataaaaaagtttcgcgcgaacaaaaaaaagttgaaggaagttct acttttttcatccgttacgtcaatttctaccaatggaattgcttcatttt tcaaccgaccaatgaccttacaaaaacgtcaaaaagttttcgctcatgtc gcgcgaaaggggagaccggcctttagtaTATTTGTACCATTTGACTCGTA AGTTTATTTCTTTATTAATCCAATTTTAGTAATCGTGAGCCAAGTGTCCA CGTCATGCCTCAGACGTTTCATGCCAAAAGTCAGAAATTCACCGAGCATC TTGGACAATGTGGAATGTATAAAAACTATTCATTGAACACTTCTCTAGAT AAGAATCCAGTCTCCTCTCAACTCGatggtttattttgaaattgtaaata ttttgttttaaatgtatttttttaggtttttaaaaatgaatAGTCAAAGA ATGAAGTAATAAAGATAATTAGATGCGTGTGGAGCTTGATTACAGAAACA CCTGTAGATATTATATCGTCGCTGTAGAATAAAAAGGAGTTATGTCCATT TTTGCTGTTTTGAGATAATCGCATTTTAAGTATTTCAATACTTGCAGTGG AAGATTGAAGCACCTTTAAAGAGGCTATAGAGGTTTTTCTGTAAATTAAG CCTATCCTTGGcaatataataattttttttcagtggatTATTGTTGCTAT CTGGCCCTTGCAGGggccaactttttttttgttttccaaaATGGACATAA GGCTCAATAAAAAGCCAAACTATTCAATTTTCTCACTACACAGTAAGGAA AATTGTGAACAAAAAAAGACCTATGTCCAAATTTCATTGTGATTATTGTC ATTGTGATTGGACATAACTCTTTCTTTTATTACATAGTCCATTCAATTAT GGACATAAAGAAAATTTATCTCAagagcaaaaaaatattataaaaaaatg aacaaaatttcttaaaatttattGCCTGGGGGAGccagaaaataataaaa acaaaaaattcaaaaattggaCATAAGTCTTTTTTATTGTACAGCGACGA tatgcaacatttcaagcatTTTGTTTAGGTTTAGGCTGAATTCTAAGAAT TGACTCGTacatttgataaattttataataATTGATTGTAAATAAAGATA AATCTCATCCTTAATGAAAATCGATCGTCTTTGCTATTCTAAAAGTCCTT CTAAAATAGACTGTGGTTACCCATGGTCAGTTAAATTTTAATTACTTATT agtacttttgatagaatttgcaTCAGCTAAATCGTATCATTCAGCCTCGT TCTCAACTTAAAAGAATGAATAAAATCGAACCATTTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039284XLOC_039284Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062675-exon-scaffold_371-1491911889:277542..277898TCONS_00062675-exon-scaffold_371-1491911889:277542..277898Clytia hemisphaericaexon
TCONS_00062675-exon-scaffold_371-1510915933:277542..277898TCONS_00062675-exon-scaffold_371-1510915933:277542..277898Clytia hemisphaericaexon
TCONS_00062675-exon-scaffold_371-1575043694:277542..277898TCONS_00062675-exon-scaffold_371-1575043694:277542..277898Clytia hemisphaericaexon
TCONS_00062675-exon-scaffold_371-1491911889:282570..282663TCONS_00062675-exon-scaffold_371-1491911889:282570..282663Clytia hemisphaericaexon
TCONS_00062675-exon-scaffold_371-1510915933:282570..282663TCONS_00062675-exon-scaffold_371-1510915933:282570..282663Clytia hemisphaericaexon
TCONS_00062675-exon-scaffold_371-1575043694:282570..282663TCONS_00062675-exon-scaffold_371-1575043694:282570..282663Clytia hemisphaericaexon
TCONS_00062675-exon-scaffold_371-1491911889:284205..284271TCONS_00062675-exon-scaffold_371-1491911889:284205..284271Clytia hemisphaericaexon
TCONS_00062675-exon-scaffold_371-1510915933:284205..284271TCONS_00062675-exon-scaffold_371-1510915933:284205..284271Clytia hemisphaericaexon
TCONS_00062675-exon-scaffold_371-1575043694:284205..284271TCONS_00062675-exon-scaffold_371-1575043694:284205..284271Clytia hemisphaericaexon
TCONS_00062675-exon-scaffold_371-1491911889:284821..285930TCONS_00062675-exon-scaffold_371-1491911889:284821..285930Clytia hemisphaericaexon
TCONS_00062675-exon-scaffold_371-1510915933:284821..285930TCONS_00062675-exon-scaffold_371-1510915933:284821..285930Clytia hemisphaericaexon
TCONS_00062675-exon-scaffold_371-1575043694:284821..285930TCONS_00062675-exon-scaffold_371-1575043694:284821..285930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_371supercontigscaffold_371:277542..285930 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.253496 0.191718 0.409311 0.441644 10.1592 5.29511 5.12609 5.85801 2.78604 2.81538 3.00707 1.3471 0.396466 0.586781 0.104204 0.511044 0.136591 0.263823 0.307683 0.398502 0.447056 0.614145 0.0673161 0.107622 0.524908 1.32673 0.420324 0.987469 0.223683 0.296449
Blast
BLAST of TCONS_00062675 vs. Swiss-Prot (Human)
Match: CI116 (UPF0691 protein C9orf116 OS=Homo sapiens GN=C9orf116 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.679e-18
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  397 KTSDYYTVK-NIPDRFNKPDSFKGYAKKQAHPMYMTSAMEYGNREPSVHVMPQTFHAKSQKFTEHLGQCGMYKNYSLNTSLDKNPVS 654
            +TSDYY V  ++P RFN P  F+GY  ++A  +Y TS   YG+R P+VH MP+ F+  S KF++ L   GM++N +LN  L+K+ V+
Sbjct:   23 RTSDYYRVSADLPGRFNNPGWFRGYRTQKAVSVYRTSNQAYGSRAPTVHEMPKVFYPNSNKFSQQLAAGGMFRNNTLNVYLEKSIVT 109          
The following BLAST results are available for this feature:
BLAST of TCONS_00062675 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CI1164.679e-1844.83UPF0691 protein C9orf116 OS=Homo sapiens GN=C9orf1... [more]
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