TCONS_00062658 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062658
Unique NameTCONS_00062658
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062658 ID=TCONS_00062658|Name=TCONS_00062658|organism=Clytia hemisphaerica|type=transcript|length=315bp
ATAATTTGTTGTATTTGATGGCAATCCTCTCTGGTAAGTTTATGCTATAT
TTGAAgctatttttcaaagtttaaaattattttgcttaactgtttttaaa
ttttaaactttcaaaaatggcttcaaattataACATAAACTTACCGGAGA
AGATGTTTAAGAGTCAGTTTcacatatttgaaaaattttttgtgatCGTT
TACAATGGCTTCAAGATGCATACATATTCACGAGAAACAGCATTAAACTG
TGAAACATTGGTTACTGACTGTTCGGATCAAATCATTTACATTATAACAT
GTTTACTGTGGAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_370:269169..269483

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062658 ID=TCONS_00062658|Name=TCONS_00062658|organism=Clytia hemisphaerica|type=transcript|length=315bp|location=Sequence derived from alignment at scaffold_370:269169..269483 (Clytia hemisphaerica)
ATTTCCACAGTAAACATGTTATAATGTAAATGATTTGATCCGAACAGTCA
GTAACCAATGTTTCACAGTTTAATGCTGTTTCTCGTGAATATGTATGCAT
CTTGAAGCCATTGTAAACGatcacaaaaaatttttcaaatatgtgAAACT
GACTCTTAAACATCTTCTCCGGTAAGTTTATGTtataatttgaagccatt
tttgaaagtttaaaatttaaaaacagttaagcaaaataattttaaacttt
gaaaaatagcTTCAAATATAGCATAAACTTACCAGAGAGGATTGCCATCA
AATACAACAAATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039270XLOC_039270Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062658-exon-scaffold_370-1491911889:269169..269483TCONS_00062658-exon-scaffold_370-1491911889:269169..269483Clytia hemisphaericaexon
TCONS_00062658-exon-scaffold_370-1510915933:269169..269483TCONS_00062658-exon-scaffold_370-1510915933:269169..269483Clytia hemisphaericaexon
TCONS_00062658-exon-scaffold_370-1575043694:269169..269483TCONS_00062658-exon-scaffold_370-1575043694:269169..269483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:269169..269483 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.334618	0.279628	0	0	0	0	0	0	0.281976	0	0	0.445707	1.12722	0.602425	0.570021	0.407813	0	0.257468	7.90092	1.72431	1.29411	0.473416	0	1.00902	0	0	0.917655	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062658 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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