TCONS_00062657 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062657
Unique NameTCONS_00062657
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062657 ID=TCONS_00062657|Name=TCONS_00062657|organism=Clytia hemisphaerica|type=transcript|length=932bp
GTCAAATTTTTCTTCACGACGGAAAAGCCTCTTTTTATAACTTTTGTAAT
GAAGTCCATCCGAAACAGAAGAACAATACCGTACAGAGAGAAAGTCCCTA
ATTTGTCCTTAGTTTTGACTTGTAGCTTTAAACATCAATTGAATTTCCTG
AATTGCGTCACTGTCGACGTACGTCCTCCAGCGGAGAAAATTGGGATGGT
TCGGATCAAGGTACATACAATCATTCAACCAGAACGGACCGTGACCGCGT
GTAATACAAGTTGATCCGTAACTTCGATCATGTGTATGGAATTTCTTTCC
GTTCAGGTTTTGTGGACCCGTCAAAGATTCTATCCCGGTCAGTAGAGTTT
CATTGAAATGAAGAGTATAATCTTGACTTTCGTTATCGATGTAAAATTCA
CCGTATCTTGAGATGAGAGTCTCACCCGTGTATGCTTCAGCGTGCACCAA
AAAATCATGCTTCGCAGAGATACTCATTTCATGGATAAAATCGTTTCCTA
GCCAAAATTCTCGATGTGGGTCACCAAAGCCTACTTTGTAATCATTCCAA
GAGCGTTGGAAATCTACGGGGCGAGGCTGATATCGTCGTTGGAAAACAAT
CCACCCTCCGCCCTCAATATCCATGTTGCATCTGATATCTTTCAAAAAAC
GCCCCATCCAGTTCACCTTGTAAACACCCGACGCCCTCGCTCCAATACTG
TACCAATCTTTACAATTCCTCGCATTGATGAAGTAGCAAATTCGAAAAGA
AACCCTGACCAGATCTTCACGCATGGTAGCGCTATCGTAAAATTGACATT
CATATTGATTACTGGATGTTTGTTTGATGGTGTAGGAATGGCATTTACGA
GTGGTACCACAGACACTTATACATTGTTCTTTGAACTTGGATGAAAATGC
GAAGTAAGGGTCTTTAGAAGGATGACCATTAG
Run BLAST on NCBI

protein sequence of TCONS_00062657-protein

>TCONS_00062657-protein ID=TCONS_00062657-protein|Name=TCONS_00062657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
NGHPSKDPYFAFSSKFKEQCISVCGTTRKCHSYTIKQTSSNQYECQFYDS
ATMREDLVRVSFRICYFINARNCKDWYSIGARASGVYKVNWMGRFLKDIR
CNMDIEGGGWIVFQRRYQPRPVDFQRSWNDYKVGFGDPHREFWLGNDFIH
EMSISAKHDFLVHAEAYTGETLISRYGEFYIDNESQDYTLHFNETLLTGI
ESLTGPQNLNGKKFHTHDRSYGSTCITRGHGPFWLNDCMYLDPNHPNFLR
WRTYVDSDAIQEIQLMFKATSQN
Run BLAST on NCBI

transcript from alignment at scaffold_370:268101..269032

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062657 ID=TCONS_00062657|Name=TCONS_00062657|organism=Clytia hemisphaerica|type=transcript|length=932bp|location=Sequence derived from alignment at scaffold_370:268101..269032 (Clytia hemisphaerica)
CTAATGGTCATCCTTCTAAAGACCCTTACTTCGCATTTTCATCCAAGTTC
AAAGAACAATGTATAAGTGTCTGTGGTACCACTCGTAAATGCCATTCCTA
CACCATCAAACAAACATCCAGTAATCAATATGAATGTCAATTTTACGATA
GCGCTACCATGCGTGAAGATCTGGTCAGGGTTTCTTTTCGAATTTGCTAC
TTCATCAATGCGAGGAATTGTAAAGATTGGTACAGTATTGGAGCGAGGGC
GTCGGGTGTTTACAAGGTGAACTGGATGGGGCGTTTTTTGAAAGATATCA
GATGCAACATGGATATTGAGGGCGGAGGGTGGATTGTTTTCCAACGACGA
TATCAGCCTCGCCCCGTAGATTTCCAACGCTCTTGGAATGATTACAAAGT
AGGCTTTGGTGACCCACATCGAGAATTTTGGCTAGGAAACGATTTTATCC
ATGAAATGAGTATCTCTGCGAAGCATGATTTTTTGGTGCACGCTGAAGCA
TACACGGGTGAGACTCTCATCTCAAGATACGGTGAATTTTACATCGATAA
CGAAAGTCAAGATTATACTCTTCATTTCAATGAAACTCTACTGACCGGGA
TAGAATCTTTGACGGGTCCACAAAACCTGAACGGAAAGAAATTCCATACA
CATGATCGAAGTTACGGATCAACTTGTATTACACGCGGTCACGGTCCGTT
CTGGTTGAATGATTGTATGTACCTTGATCCGAACCATCCCAATTTTCTCC
GCTGGAGGACGTACGTCGACAGTGACGCAATTCAGGAAATTCAATTGATG
TTTAAAGCTACAAGTCAAAACTAAGGACAAATTAGGGACTTTCTCTCTGT
ACGGTATTGTTCTTCTGTTTCGGATGGACTTCATTACAAAAGTTATAAAA
AGAGGCTTTTCCGTCGTGAAGAAAAATTTGAC

Coding sequence (CDS) from alignment at scaffold_370:268101..269032

>TCONS_00062657 ID=TCONS_00062657|Name=TCONS_00062657|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_370:268101..269032 (Clytia hemisphaerica)
AATGGTCATCCTTCTAAAGACCCTTACTTCGCATTTTCATCCAAGTTCAA
AGAACAATGTATAAGTGTCTGTGGTACCACTCGTAAATGCCATTCCTACA
CCATCAAACAAACATCCAGTAATCAATATGAATGTCAATTTTACGATAGC
GCTACCATGCGTGAAGATCTGGTCAGGGTTTCTTTTCGAATTTGCTACTT
CATCAATGCGAGGAATTGTAAAGATTGGTACAGTATTGGAGCGAGGGCGT
CGGGTGTTTACAAGGTGAACTGGATGGGGCGTTTTTTGAAAGATATCAGA
TGCAACATGGATATTGAGGGCGGAGGGTGGATTGTTTTCCAACGACGATA
TCAGCCTCGCCCCGTAGATTTCCAACGCTCTTGGAATGATTACAAAGTAG
GCTTTGGTGACCCACATCGAGAATTTTGGCTAGGAAACGATTTTATCCAT
GAAATGAGTATCTCTGCGAAGCATGATTTTTTGGTGCACGCTGAAGCATA
CACGGGTGAGACTCTCATCTCAAGATACGGTGAATTTTACATCGATAACG
AAAGTCAAGATTATACTCTTCATTTCAATGAAACTCTACTGACCGGGATA
GAATCTTTGACGGGTCCACAAAACCTGAACGGAAAGAAATTCCATACACA
TGATCGAAGTTACGGATCAACTTGTATTACACGCGGTCACGGTCCGTTCT
GGTTGAATGATTGTATGTACCTTGATCCGAACCATCCCAATTTTCTCCGC
TGGAGGACGTACGTCGACAGTGACGCAATTCAGGAAATTCAATTGATGTT
TAAAGCTACAAGTCAAAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039269XLOC_039269Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062657-proteinTCONS_00062657-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062657-exon-scaffold_370-1491911889:268101..269032TCONS_00062657-exon-scaffold_370-1491911889:268101..269032Clytia hemisphaericaexon
TCONS_00062657-exon-scaffold_370-1510915933:268101..269032TCONS_00062657-exon-scaffold_370-1510915933:268101..269032Clytia hemisphaericaexon
TCONS_00062657-exon-scaffold_370-1575043694:268101..269032TCONS_00062657-exon-scaffold_370-1575043694:268101..269032Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:268101..269032 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29612	0.615737	0.620105	0.421804	0.132348	0.209166	0.25235	0.0743425	0.992412	0.563412	0.397717	1.79009	4.54543	2.86678	0.921399	0.64633	0.294694	0.626093	11.8045	8.71954	1.4077	1.18799	0.53713	1.17648	0.421476	0.970407	0.67285	0.0718083	0.381249	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002181Fibrinogen_a/b/g_C_dom
IPR014715Fibrinogen_a/b/g_C_2
IPR014716Fibrinogen_a/b/g_C_1
Blast
[Close]
BLAST of TCONS_00062657 vs. Swiss-Prot (Human)
Match: FCN3 (Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.617e-25
Identity = 65/173 (37.57%), Postives = 92/173 (53.18%), Query Frame = -3 
Query:  217 RNCKDWYSIGARASGVYKVNW-MGRFLKDIRCNMDIEGGGWIVFQRRYQPRPVDFQRSWNDYKVGFGDPHREFWLGNDFIHEMSISAKHDFLVHAEAYTGETLISRYGEFYIDNESQDYTLHFNE-TLLTGIESLTGPQNLNGKKFHTHDR---SYGSTCITRGHGPFWLNDC 720
            RNC++  S GA  SG Y +    GR L  + C+MD EGGGW+VFQRR Q   VDF RSW+ Y+ GFG+   EFWLGN+ +H++++    +  V  E + G    + Y  F +  E   Y L   + +  T  +SL+     +G+ F T+D    S  S C    HG +W   C
Sbjct:   91 RNCRELLSQGATLSGWYHLCLPEGRALP-VFCDMDTEGGGWLVFQRR-QDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLS---LHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASC 258
The following BLAST results are available for this feature:
BLAST of TCONS_00062657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCN39.617e-2537.57Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2[more]
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