Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062657 ID=TCONS_00062657|Name=TCONS_00062657|organism=Clytia hemisphaerica|type=transcript|length=932bpRun BLAST on NCBI protein sequence of TCONS_00062657-protein >TCONS_00062657-protein ID=TCONS_00062657-protein|Name=TCONS_00062657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp NGHPSKDPYFAFSSKFKEQCISVCGTTRKCHSYTIKQTSSNQYECQFYDSRun BLAST on NCBI transcript from alignment at scaffold_370:268101..269032 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062657 ID=TCONS_00062657|Name=TCONS_00062657|organism=Clytia hemisphaerica|type=transcript|length=932bp|location=Sequence derived from alignment at scaffold_370:268101..269032 (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_370:268101..269032 >TCONS_00062657 ID=TCONS_00062657|Name=TCONS_00062657|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_370:268101..269032 (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00062657 vs. Swiss-Prot (Human)
Match: FCN3 (Ficolin-3 OS=Homo sapiens GN=FCN3 PE=1 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 9.617e-25 Identity = 65/173 (37.57%), Postives = 92/173 (53.18%), Query Frame = -3 Query: 217 RNCKDWYSIGARASGVYKVNW-MGRFLKDIRCNMDIEGGGWIVFQRRYQPRPVDFQRSWNDYKVGFGDPHREFWLGNDFIHEMSISAKHDFLVHAEAYTGETLISRYGEFYIDNESQDYTLHFNE-TLLTGIESLTGPQNLNGKKFHTHDR---SYGSTCITRGHGPFWLNDC 720 RNC++ S GA SG Y + GR L + C+MD EGGGW+VFQRR Q VDF RSW+ Y+ GFG+ EFWLGN+ +H++++ + V E + G + Y F + E Y L + + T +SL+ +G+ F T+D S S C HG +W C Sbjct: 91 RNCRELLSQGATLSGWYHLCLPEGRALP-VFCDMDTEGGGWLVFQRR-QDGSVDFFRSWSSYRAGFGNQESEFWLGNENLHQLTLQGNWELRVELEDFNGNRTFAHYATFRLLGEVDHYQLALGKFSEGTAGDSLS---LHSGRPFTTYDADHDSSNSNCAVIVHGAWWYASC 258 The following BLAST results are available for this feature:
BLAST of TCONS_00062657 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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