TCONS_00062656 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062656
Unique NameTCONS_00062656
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062656 ID=TCONS_00062656|Name=TCONS_00062656|organism=Clytia hemisphaerica|type=transcript|length=247bp
GTTTTTTGTACCGCAATAAAAATTCGGGAATAAATCTGCACAGCGCAGAT
GCTCCGTTACGATTCAGCTTGACAGACATTATACTAGAGATTCGCACGGT
ACACCCATAGCCTCGATGAAAAGTTCGCAGTGATTGAAAACAAACCCAAT
CAAACTTCCAAAGGAACTATGCATTCCAAAATAGAAGGTACTTCACTTTG
GTAGATGTAAAAATTAACCTTTCCGATGCTTTCATCAAGTGGCAATG
Run BLAST on NCBI

transcript from alignment at scaffold_370:235958..236204

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062656 ID=TCONS_00062656|Name=TCONS_00062656|organism=Clytia hemisphaerica|type=transcript|length=247bp|location=Sequence derived from alignment at scaffold_370:235958..236204 (Clytia hemisphaerica)
CATTGCCACTTGATGAAAGCATCGGAAAGGTTAATTTTTACATCTACCAA
AGTGAAGTACCTTCTATTTTGGAATGCATAGTTCCTTTGGAAGTTTGATT
GGGTTTGTTTTCAATCACTGCGAACTTTTCATCGAGGCTATGGGTGTACC
GTGCGAATCTCTAGTATAATGTCTGTCAAGCTGAATCGTAACGGAGCATC
TGCGCTGTGCAGATTTATTCCCGAATTTTTATTGCGGTACAAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039268XLOC_039268Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062656-exon-scaffold_370-1491911889:235958..236204TCONS_00062656-exon-scaffold_370-1491911889:235958..236204Clytia hemisphaericaexon
TCONS_00062656-exon-scaffold_370-1510915933:235958..236204TCONS_00062656-exon-scaffold_370-1510915933:235958..236204Clytia hemisphaericaexon
TCONS_00062656-exon-scaffold_370-1575043694:235958..236204TCONS_00062656-exon-scaffold_370-1575043694:235958..236204Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:235958..236204 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.01454	5.30832	8.41303	11.8742	7.58968	9.42458	8.26935	15.4833	12.0011	7.76733	6.89721	7.80707	4.73089	12.9087	14.5158	15.6243	1.7896	11.0927	10.064	11.8434	5.33057	8.04286	8.9276	14.7297	3.89848	5.63539	9.87657	4.96936	15.1936	17.2162
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062656 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top