TCONS_00062653 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062653
Unique NameTCONS_00062653
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062653 ID=TCONS_00062653|Name=TCONS_00062653|organism=Clytia hemisphaerica|type=transcript|length=370bp
GAACTAACTCAGTTGAAAAGACTCAGCACttttttctgcactgctctata
tattcccatgcgagACAATCTCTATTCGACAAACTACAAGACTTAGGTAT
TATTTTCCTGCCACTAAACCCTTCttatttttgtcggtttttATTATACG
GTGATGAAAgcttgactttaattttaaatcaaactatAATTCTTTATGTC
GTTGAATATATCCATGAATCTGGAAGGTTCAGTGGTGCGTTATTTTAGTC
TACTACAACCATAGCTCTCTCCACGTCACacctttttttactttttcctt
tcttcatagccttacctctggcgatataacttaagtttctagcggaggga
gggactatattaatGTTTAG
Run BLAST on NCBI

transcript from alignment at scaffold_370:111644..112013

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062653 ID=TCONS_00062653|Name=TCONS_00062653|organism=Clytia hemisphaerica|type=transcript|length=370bp|location=Sequence derived from alignment at scaffold_370:111644..112013 (Clytia hemisphaerica)
CTAAACattaatatagtccctccctccgctagaaacttaagttatatcgc
cagaggtaaggctatgaagaaaggaaaaagtaaaaaaaggtGTGACGTGG
AGAGAGCTATGGTTGTAGTAGACTAAAATAACGCACCACTGAACCTTCCA
GATTCATGGATATATTCAACGACATAAAGAATTatagtttgatttaaaat
taaagtcaagcTTTCATCACCGTATAATaaaaaccgacaaaaataaGAAG
GGTTTAGTGGCAGGAAAATAATACCTAAGTCTTGTAGTTTGTCGAATAGA
GATTGTctcgcatgggaatatatagagcagtgcagaaaaaaGTGCTGAGT
CTTTTCAACTGAGTTAGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039265XLOC_039265Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062653-exon-scaffold_370-1491911889:111644..112013TCONS_00062653-exon-scaffold_370-1491911889:111644..112013Clytia hemisphaericaexon
TCONS_00062653-exon-scaffold_370-1510915933:111644..112013TCONS_00062653-exon-scaffold_370-1510915933:111644..112013Clytia hemisphaericaexon
TCONS_00062653-exon-scaffold_370-1575043694:111644..112013TCONS_00062653-exon-scaffold_370-1575043694:111644..112013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:111644..112013 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.834883	1.23915	4.68875	5.39817	0.837349	0.564425	1.25646	1.56597	0.270056	1.38576	0	0.314234	1.69089	1.06538	0.339659	0.299183	0	0.417517	4.72292	3.68075	0.794058	1.12363	0.940096	0.367575	1.4916	1.58289	0	0.405347	1.01588	0.910569
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062653 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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