TCONS_00062646 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062646
Unique NameTCONS_00062646
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062646 ID=TCONS_00062646|Name=TCONS_00062646|organism=Clytia hemisphaerica|type=transcript|length=465bp
AAAATGTCTTAAATATCTCAAACAgctattttttacaaatatgtTTTCCA
AGCCTGACCCTCGACGGAAAATACTTCATGCAAGTCTTGCATTGATGATT
GGAAGTTTTTTGATGGACCTGCTCCATATGTGTTTCCATGCGATCTTTGG
TGGTTATACCCTTTTTGCATATGCTACAATGAAAAGGAAGATCATCCCGG
TATGCAGTGTTGAGACAGTCGTCAGATTTGTTGAGAAGGGTACACAAACG
GAAGAGGACAATGAAACTCGGGAAGAAATTCAAGATTACATAAAGGACCT
GGAGATGACCATTCGCCAGCTGAAATCTCGTTTAATAAAAAGAACATACG
AAAGAGCTTTTTCAAGTACTCGAACTGCATTAGATGAAATATTGGAAGAA
CATTATCCCAgcaaaaaagcaaaataaatatatttttcaatcaatgtata
tatttctcattttct
Run BLAST on NCBI

protein sequence of TCONS_00062646-protein

>TCONS_00062646-protein ID=TCONS_00062646-protein|Name=TCONS_00062646-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
KCLKYLKQLFFTNMFSKPDPRRKILHASLALMIGSFLMDLLHMCFHAIFG
GYTLFAYATMKRKIIPVCSVETVVRFVEKGTQTEEDNETREEIQDYIKDL
EMTIRQLKSRLIKRTYERAFSSTRTALDEILEEHYPSKKAK
Run BLAST on NCBI

transcript from alignment at scaffold_370:20322..20786

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062646 ID=TCONS_00062646|Name=TCONS_00062646|organism=Clytia hemisphaerica|type=transcript|length=465bp|location=Sequence derived from alignment at scaffold_370:20322..20786 (Clytia hemisphaerica)
agaaaatgagaaatatatacattgattgaaaaatatatttattttgcttt
tttgcTGGGATAATGTTCTTCCAATATTTCATCTAATGCAGTTCGAGTAC
TTGAAAAAGCTCTTTCGTATGTTCTTTTTATTAAACGAGATTTCAGCTGG
CGAATGGTCATCTCCAGGTCCTTTATGTAATCTTGAATTTCTTCCCGAGT
TTCATTGTCCTCTTCCGTTTGTGTACCCTTCTCAACAAATCTGACGACTG
TCTCAACACTGCATACCGGGATGATCTTCCTTTTCATTGTAGCATATGCA
AAAAGGGTATAACCACCAAAGATCGCATGGAAACACATATGGAGCAGGTC
CATCAAAAAACTTCCAATCATCAATGCAAGACTTGCATGAAGTATTTTCC
GTCGAGGGTCAGGCTTGGAAAacatatttgtaaaaaatagcTGTTTGAGA
TATTTAAGACATTTT

Coding sequence (CDS) from alignment at scaffold_370:20322..20786

>TCONS_00062646 ID=TCONS_00062646|Name=TCONS_00062646|organism=Clytia hemisphaerica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_370:20322..20786 (Clytia hemisphaerica)
ttattttgcttttttgcTGGGATAATGTTCTTCCAATATTTCATCTAATG
CAGTTCGAGTACTTGAAAAAGCTCTTTCGTATGTTCTTTTTATTAAACGA
GATTTCAGCTGGCGAATGGTCATCTCCAGGTCCTTTATGTAATCTTGAAT
TTCTTCCCGAGTTTCATTGTCCTCTTCCGTTTGTGTACCCTTCTCAACAA
ATCTGACGACTGTCTCAACACTGCATACCGGGATGATCTTCCTTTTCATT
GTAGCATATGCAAAAAGGGTATAACCACCAAAGATCGCATGGAAACACAT
ATGGAGCAGGTCCATCAAAAAACTTCCAATCATCAATGCAAGACTTGCAT
GAAGTATTTTCCGTCGAGGGTCAGGCTTGGAAAacatatttgtaaaaaat
agcTGTTTGAGATATTTAAGACATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039258XLOC_039258Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062646-proteinTCONS_00062646-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062646-exon-scaffold_370-1491911889:20322..20786TCONS_00062646-exon-scaffold_370-1491911889:20322..20786Clytia hemisphaericaexon
TCONS_00062646-exon-scaffold_370-1510915933:20322..20786TCONS_00062646-exon-scaffold_370-1510915933:20322..20786Clytia hemisphaericaexon
TCONS_00062646-exon-scaffold_370-1575043694:20322..20786TCONS_00062646-exon-scaffold_370-1575043694:20322..20786Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:20322..20786 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.135142	0	0	0.18689	0.147683	0	0.50041	0.116783	0.289309	0	0.27689	0	0.191436	0	0.1689	1.04035	0	0	0	0	0	0	0	0	0.132794	0	0	0.307637	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062646 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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