TCONS_00062634 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062634
Unique NameTCONS_00062634
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062634 ID=TCONS_00062634|Name=TCONS_00062634|organism=Clytia hemisphaerica|type=transcript|length=1707bp
aacaaCAGCAAACGCATTGAAACCATCAAGAGAGAGGGACATGGTGTGAC
CATAAAACAACATCTAAAGAATATAAAATAACATCTTATATTCATTAAAA
TGTCTACCGGTAATCAAACCAACATTAAACTTGTACTCAAGAATGATACA
TGGGTCCCAAAGAAAAGTAATCACACCAGTGCCCTCGAGCAGCATGGTTT
AGACATGAAGAAAGTTCTCGGGGAAGGAGCATTTGCCAAAGTGAAACAAG
CTTTTTCTCATAAAGAGAAACGAGAAGTTGCGGTCAAAGTATTCGAAAAA
CGTCGATTACCTTTCGATTATTTGAAACGATTCTTACCGAGAGAAATTCG
CGTCTTGAATGCATTGCAACATCCTAATTTGGTCTCCTTACTTGACGTTT
TCGAAACAACATCTCGAGTTTATCTCGTTCTTGAGTTTGCTGAGGGTGGA
GATTTGTTGGAATTTATCAACCAAGATTCGTATAAGAACGAAGCTCATGT
GAAACGTCATTTCCAACAATTAATTGCTGGAATGAGTTCGATGCATGGTC
AGGGGATTGTTCACCGAGatttaaaatgtgaaaatattttattggaCGCT
CGTAACAATGTTAAAATTGCTGATTTTGGTTTTGCTCGATTTACCGAAGC
AGACGTGCTGCTGAAAACTATTTGTGGATCTTTCGTTTACACCGCTCCAG
AACTGATAGCAGGAGAACAAGATTATAGTGGCTTTCTTGCAGACGCTTGG
AGTACTGGTATCATTCTGTTTTGCATGCTATGTAGAAAACTACCATTCAC
TAAAGATGAGTTGAATTTGATTGCTAAAGGGAAGAATTTGTTGGATAGAC
TTGAATTCCCTCATGCTATCACACACGACGCTCGTGACGTGGTGTACGGT
TTATTGGAACAAGATCCACTGAATCGTTTGAACGCTTTCACCGTTCAAAA
ACATAAATGGTGTCATGGTTTCAAATCGGATCAAAAGCCTTACCAACAAA
AAGGCAAAGCCATCGACATCATTGAAGCGCCAAATACGATTGCTAACAGT
ACTCGTGCTGAAAACGATCGCGCGCACATGCTATTCGAAGTTGTGCGTCC
GCAAGGCAAATTTGTTCGTGCTATTGAAAGACAACGGTTCAACCTTTTAG
CTTTGAGTGTGTTCTCGAAGAACAAAAAGAGCGCCCCACCTGACGCCCGT
TTGTCATGTGTTCTATCACAATCACTACTGAAGCCGCCCACAAATGCCCG
CCAGAGGTTCAATCTAGTGACTAGTCTAGTCAAATGCGCCAATTCGCTTG
CTAGTGAGCGGAGAGCAACTACAgctagtaaaaatcaaaaaaaatcccaa
ggtCGAACTATACTTAAAGATGTCGAGATGAAACAAAAATCACCTCCTGG
AAAATCTAAGATGAATTCAGCTGACTCAATTTCCCAAGTGGGCTACGAAG
ACTTTTTGAGTAAAAAGCAAAGTGAACGAGGCAAAGAATTGCAAAATGTG
GGTCGTTCCGCTGGCTCTAACGTAGCGAAAAGAGCTGCTACCGTTAAGCA
AACATCTTACAAAGGGAAACCGGGCACACAGGCTGAGGAGCCAAACCTTA
ATCAAGAATCTTGGAACAAGAAATGTGTCGTGGCTTGCAAAACTTCTCGA
CGTTGAATTATTTGATGGAAAACCCTAGaatataagatcattgaaaaaag
agcaaaa
Run BLAST on NCBI

protein sequence of TCONS_00062634-protein

>TCONS_00062634-protein ID=TCONS_00062634-protein|Name=TCONS_00062634-protein|organism=Clytia hemisphaerica|type=polypeptide|length=518bp
MSTGNQTNIKLVLKNDTWVPKKSNHTSALEQHGLDMKKVLGEGAFAKVKQ
AFSHKEKREVAVKVFEKRRLPFDYLKRFLPREIRVLNALQHPNLVSLLDV
FETTSRVYLVLEFAEGGDLLEFINQDSYKNEAHVKRHFQQLIAGMSSMHG
QGIVHRDLKCENILLDARNNVKIADFGFARFTEADVLLKTICGSFVYTAP
ELIAGEQDYSGFLADAWSTGIILFCMLCRKLPFTKDELNLIAKGKNLLDR
LEFPHAITHDARDVVYGLLEQDPLNRLNAFTVQKHKWCHGFKSDQKPYQQ
KGKAIDIIEAPNTIANSTRAENDRAHMLFEVVRPQGKFVRAIERQRFNLL
ALSVFSKNKKSAPPDARLSCVLSQSLLKPPTNARQRFNLVTSLVKCANSL
ASERRATTASKNQKKSQGRTILKDVEMKQKSPPGKSKMNSADSISQVGYE
DFLSKKQSERGKELQNVGRSAGSNVAKRAATVKQTSYKGKPGTQAEEPNL
NQESWNKKCVVACKTSRR
Run BLAST on NCBI

transcript from alignment at scaffold_370:330387..335059+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062634 ID=TCONS_00062634|Name=TCONS_00062634|organism=Clytia hemisphaerica|type=transcript|length=4673bp|location=Sequence derived from alignment at scaffold_370:330387..335059+ (Clytia hemisphaerica)
aacaaCAGCAAACGCATTGAAACCATCAAGAGAGAGGGACATGGTGTGAC
CATAAAACAACATCTAAAGAATATAAAATAACATCTTATATTCATTAAAA
TGTCTACCGGTAATCAAACCAACATTAAACTTGTACTCAAGAATGATACA
TGGGTCCCAAAGAAAAGTAATCACACCAGGTTAGAAAATCCATTCATCAt
tcattttttgcaattttttattCCTTCTCAGCTCTTTTCTTCGTTGTGAA
CTTCTCATGTCGGGAttaatctaaagaatcctacatttactaagaaatag
acaaaaagaacgacaaatttcgccATCCACAAACCCGACCCGGTTAGTTT
GTCCAccccacagatttctgtaaagcccgaagtaCTAGATAAAGTGAACT
AAATATGATCGTCCAGGATCgtcaaatttttcgaaattttcgaggatgca
ttttccaaaaatcaccATTTTTCTACATCGATGCTATAATGTTTACTCAA
TCTACCATTCGTACGGAACAACACGATTTGAGTTCTGCTGAGCAATGTTC
ATTATATATTTCTTAACGTTTTCAGTGCCCTCGAGCAGCATGGTTTAGAC
ATGAAGAAAGTTCTCGGGGAAGGAGCATTTGCCAAAGTGAAACAAGCTTT
TTCTCATAAAGAGAAACGAGAAGTTGCGGTCAAAGTATTCGAAAAACGTC
GATTACCTTTCGATTATTTGAAACGATTCTTACCGAGAGAAATTCGCGTC
TTGAATGCATTGCAACATCCTAATTTGGTAAGATATACACGTTACACATA
TTTTTTTCGTAAGAACAATCTTATAATAACATAGGACTCACTTTTTtatt
gttaagaacaatttcagaatCAAATTGAAGTTGATGGATCCCAATTACTA
GATACTCTGAAAAGCGAACATTCTTCGATAGATAGCAGCTTTTCGGCTTG
AATTTGAGCGGCTAgttcttttttagattttttttcctggAACTTTCTTC
AAGAAGGACATTTCgttaaatttgtaatttttgtacTTTTCTACTTATCT
CAGGTCTCCTTACTTGACGTTTTCGAAACAACATCTCGAGTTTATCTCGT
TCTTGAGTTTGCTGAGGGTGGAGATTTGTTGGAATTTATCAACCAAGATT
CGTATAAGAACGAAGCTCATGTGAAACGTCATTTCCAACAATTAATTGCT
GGAATGAGTTCGATGCATGGTCAGGGGATTGTTCACCGAGatttaaaatg
tgaaaatattttattggaCGCTCGTAACAATGTTAAAATTGCTGGTAAGT
TCAATGAAAGACCCATTTAGTAAACAGTGGGAGGAATAACTATAAACTAA
AAGGAGATCTCCGTGATCATGTTTTAAGTTATATATATTTTCTCATTGta
attttagtttcttcggctggttccttggtttttacgttttagtttatttt
atattattgcgcgcgttttatactttcaataaacacatctttttactatc
ttttatctgtggtggtgttTAATTAACACTGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcatcttaact
catattgagttactttcttccttaaagtcattttagatcactagttttac
attgacggatttctatgtcatcatattttccttttctgctccagcctgat
tgattttctgtgaatgttcattctagatttttgttgtgtttgtattgtct
ttttgttttgtgggtttttgtctttattgtttccattttgagtagttgaa
ggttttatacttctagactatatatatttGNcttctagactatatatata
aaGAACCTGCGAATTTCGAGtaatttctttcattattcGATTTCAGATTT
TGGTTTTGCTCGATTTACCGAAGCAGACGTGCTGCTGAAAACTATTTGTG
GATCTTTCGTTTACACCGCTCCAGAACTGATAGCAGGAGAACAAGATTAT
AGTGGCTTTCTTGCAGACGCTTGGAGTACTGGTATCATTCTGTTTTGCAT
GCTATGTAGAAAACTACCATTCACTAAAGATGAGTTGAATTTGATTGCTA
AAGGGAAGAATTTGTTGGATAGACTTGAATTCCCTCATGCTATCACACAC
GGTAAGCGATGTAACCTCAATAACTCCGTTCAGTTTTTAAACttcataaa
gttttattttcCCAAAGTTAATGTGGCATAAATGTAAAAGTCCAAGGTCA
TTTCATGATTGTGTCTAACATGAAAGtaaaagtaatgttttgtacCACGT
GACTTTATAAATATACGTAGTATTTTCGACACTTCATTTTCCAAAGTTTA
TGTTCACGAAAAACATTTATGCGCGAAATTCGGTAAATTTATGTTGTATT
TATTGGCAACGTGAAAGCTTCTGTTCGCataattttatatatttaaaaat
ccCTTTTATATAGACGCTCGTGACGTGGTGTACGGTTTATTGGAACAAGA
TCCACTGAATCGTTTGAACGCTTTCACCGTTCAAAAACATAAATGGTGTC
ATGGTTTCAAATCGGATCAAAAGCCTTACCAACAAAAAGGTAGATATCTT
TGTTTTTTACGTTTCGCATTTTCGACTCCTAAAATTTTCATCTGACATCC
ATAAAATCGCAAAAGTGTTTTTTAATAAAGGCcgaggtaaacgattccaa
catttcatccaacatagaAATTGAAATGTTGGACGAATGTTGGATGAATT
TTGGAAAGGTGTTGGATCTCCTTAAANNNNNNNNNNNNNNNNNNNNNNNN
NAATTTCGGAAAGGTGTTGGATCTCCTTAAAATCGTTTCGTCGCAATGCC
CAacatcattttcatccaacatgggtgttcattcattcttttttgaattc
attcttttcaaattaGAAATGGCGAGGATTTTTATACCCAGTGTAACCAG
TGCCACTACTGCTGTTCATGCGGACAGAATTATAGTCTAACAATTGGACC
CTTACAATGCAGAGAAAATTCTGGCGAAATATCGACTGTTATGGTGCAAT
TTCCTGaaatttatttatctatttcaaggcaaaaaatggtcaaattttct
aacattttgcaacaaaaactatgttcttattttttacacacttacagtgc
attttgggaagcCTGAAAAACGTACCTTTAAAGGGTCACACCTCTACGAT
AGATCGCTTAATTTCAGTGCCCCTCCCCCTTGGtttattttccgaaaaaa
aacattcgagcTAGTAGCTTCTCTACcatctttttaaatttgttacgaga
tttttcgaatttttgacaaaaaaacattcgattttattTCTAATGACGTC
ATTCCCTTTCAAATGTTGGATTTGAGCTGAGTAAACGAATCCAACATGAT
CCAACACGAAAAGGAGAAGTAAATGTTGGACAAAATGTTTCATGGCGATC
AAACTTCCAtccaacactttttttcttcttccaacataattttttcttcc
tttccgATTTTTGCATTGTGAGGAAGTATGTAGAGTATTCAAGTATTCCA
TCACTTACAACATTATCGGACCTTCAAATGACCAAATTTTCGTAAGAAAG
GACGGTGGCAGTTAGTGGCAACTACGACCTTGTTTATTCTCACCCCTATT
TTTCCGTGATTATTTGGAAAGATCTAAATCTCTCTCTTTTGAATATTAGG
TCGCACAAAGAGCTAAGTAATTGAAGCAATCTAAtgtaataacttttttt
cttttctcatcATTTACAGGCAAAGCCATCGACATCATTGAAGCGCCAAA
TACGATTGCTAACAGTACTCGTGCTGAAAACGATCGCGCGCACATGCTAT
TCGAAGTTGTGCGTCCGCAAGGCAAATTTGTTCGTGCTATTGAAAGACAA
CGGTTCAACCTTTTAGCTTTGAGTGTGTTCTCGAAGAACAAAAAGAGCGC
CCCACCTGACGCCCGTTTGTCATGTGTTCTATCACAATCACTACTGAAGC
CGCCCACAAATGCCCGCCAGAGGTTCAATCTAGTGACTAGTCTAGTCAAA
TGCGCCAATTCGCTTGCTAGTGAGCGGAGAGCAACTACAgctagtaaaaa
tcaaaaaaaatcccaaggtCGAACTATACTTAAAGATGTCGAGATGAAAC
AAAAATCACCTCCTGGAAAATCTAAGATGAATTCAGCTGACTCAATTTCC
CAAGTGGGCTACGAAGACTTTTTGAGTAAAAAGCAAAGTGAACGAGGCAA
AGAATTGCAAAATGTGGGTCGTTCCGCTGGCTCTAACGTAGCGAAAAGAG
CTGCTACCGTTAAGCAAACATCTTACAAAGGGAAACCGGGCACACAGGCT
GAGGAGCCAAACCTTAATCAAGAATCTTGGAACAAGAAATGTGTCGTGGC
TTGCAAAACTTCTCGACGTTGAATTATTTGATGGAAAACCCTAGaatata
agatcattgaaaaaagagcaaaa

Coding sequence (CDS) from alignment at scaffold_370:330387..335059+

>TCONS_00062634 ID=TCONS_00062634|Name=TCONS_00062634|organism=Clytia hemisphaerica|type=CDS|length=9342bp|location=Sequence derived from alignment at scaffold_370:330387..335059+ (Clytia hemisphaerica)
ATGTCTACCGGTAATCAAACCAACATTAAACTTGTACTCAAGAATGATAC
ATGGGTCCCAAAGAAAAGTAATCACACCAGTGCCCTCGAGCAGCATGGTT
TAGACATGAAGAAAGTTCTCGGGGAAGGAGCATTTGCCAAAGTGAAACAA
GCTTTTTCTCATAAAGAGAAACGAGAAGTTGCGGTCAAAGTATTCGAAAA
ACGTCGATTACCTTTCGATTATTTGAAACGATTCTTACCGAGAGAAATTC
GCGTCTTGAATGCATTGCAACATCCTAATTTGGTCTCCTTACTTGACGTT
TTCGAAACAACATCTCGAGTTTATCTCGTTCTTGAGTTTGCTGAGGGTGG
AGATTTGTTGGAATTTATCAACCAAGATTCGTATAAGAACGAAGCTCATG
TGAAACGTCATTTCCAACAATTAATTGCTGGAATGAGTTCGATGCATGGT
CAGGGGATTGTTCACCGAGatttaaaatgtgaaaatattttattggaCGC
TCGTAACAATGTTAAAATTGCTGATTTTGGTTTTGCTCGATTTACCGAAG
CAGACGTGCTGCTGAAAACTATTTGTGGATCTTTCGTTTACACCGCTCCA
GAACTGATAGCAGGAGAACAAGATTATAGTGGCTTTCTTGCAGACGCTTG
GAGTACTGGTATCATTCTGTTTTGCATGCTATGTAGAAAACTACCATTCA
CTAAAGATGAGTTGAATTTGATTGCTAAAGGGAAGAATTTGTTGGATAGA
CTTGAATTCCCTCATGCTATCACACACGACGCTCGTGACGTGGTGTACGG
TTTATTGGAACAAGATCCACTGAATCGTTTGAACGCTTTCACCGTTCAAA
AACATAAATGGTGTCATGGTTTCAAATCGGATCAAAAGCCTTACCAACAA
AAAGGCAAAGCCATCGACATCATTGAAGCGCCAAATACGATTGCTAACAG
TACTCGTGCTGAAAACGATCGCGCGCACATGCTATTCGAAGTTGTGCGTC
CGCAAGGCAAATTTGTTCGTGCTATTGAAAGACAACGGTTCAACCTTTTA
GCTTTGAGTGTGTTCTCGAAGAACAAAAAGAGCGCCCCACCTGACGCCCG
TTTGTCATGTGTTCTATCACAATCACTACTGAAGCCGCCCACAAATGCCC
GCCAGAGGTTCAATCTAGTGACTAGTCTAGTCAAATGCGCCAATTCGCTT
GCTAGTGAGCGGAGAGCAACTACAgctagtaaaaatcaaaaaaaatccca
aggtCGAACTATACTTAAAGATGTCGAGATGAAACAAAAATCACCTCCTG
GAAAATCTAAGATGAATTCAGCTGACTCAATTTCCCAAGTGGGCTACGAA
GACTTTTTGAGTAAAAAGCAAAGTGAACGAGGCAAAGAATTGCAAAATGT
GGGTCGTTCCGCTGGCTCTAACGTAGCGAAAAGAGCTGCTACCGTTAAGC
AAACATCTTACAAAGGGAAACCGGGCACACAGGCTGAGGAGCCAAACCTT
AATCAAGAATCTTGGAACAAGAAATGTGTCGTGGCTTGCAAAACTTCTCG
ACGTTGAATGTCTACCGGTAATCAAACCAACATTAAACTTGTACTCAAGA
ATGATACATGGGTCCCAAAGAAAAGTAATCACACCAGTGCCCTCGAGCAG
CATGGTTTAGACATGAAGAAAGTTCTCGGGGAAGGAGCATTTGCCAAAGT
GAAACAAGCTTTTTCTCATAAAGAGAAACGAGAAGTTGCGGTCAAAGTAT
TCGAAAAACGTCGATTACCTTTCGATTATTTGAAACGATTCTTACCGAGA
GAAATTCGCGTCTTGAATGCATTGCAACATCCTAATTTGGTCTCCTTACT
TGACGTTTTCGAAACAACATCTCGAGTTTATCTCGTTCTTGAGTTTGCTG
AGGGTGGAGATTTGTTGGAATTTATCAACCAAGATTCGTATAAGAACGAA
GCTCATGTGAAACGTCATTTCCAACAATTAATTGCTGGAATGAGTTCGAT
GCATGGTCAGGGGATTGTTCACCGAGatttaaaatgtgaaaatattttat
tggaCGCTCGTAACAATGTTAAAATTGCTGATTTTGGTTTTGCTCGATTT
ACCGAAGCAGACGTGCTGCTGAAAACTATTTGTGGATCTTTCGTTTACAC
CGCTCCAGAACTGATAGCAGGAGAACAAGATTATAGTGGCTTTCTTGCAG
ACGCTTGGAGTACTGGTATCATTCTGTTTTGCATGCTATGTAGAAAACTA
CCATTCACTAAAGATGAGTTGAATTTGATTGCTAAAGGGAAGAATTTGTT
GGATAGACTTGAATTCCCTCATGCTATCACACACGACGCTCGTGACGTGG
TGTACGGTTTATTGGAACAAGATCCACTGAATCGTTTGAACGCTTTCACC
GTTCAAAAACATAAATGGTGTCATGGTTTCAAATCGGATCAAAAGCCTTA
CCAACAAAAAGGCAAAGCCATCGACATCATTGAAGCGCCAAATACGATTG
CTAACAGTACTCGTGCTGAAAACGATCGCGCGCACATGCTATTCGAAGTT
GTGCGTCCGCAAGGCAAATTTGTTCGTGCTATTGAAAGACAACGGTTCAA
CCTTTTAGCTTTGAGTGTGTTCTCGAAGAACAAAAAGAGCGCCCCACCTG
ACGCCCGTTTGTCATGTGTTCTATCACAATCACTACTGAAGCCGCCCACA
AATGCCCGCCAGAGGTTCAATCTAGTGACTAGTCTAGTCAAATGCGCCAA
TTCGCTTGCTAGTGAGCGGAGAGCAACTACAgctagtaaaaatcaaaaaa
aatcccaaggtCGAACTATACTTAAAGATGTCGAGATGAAACAAAAATCA
CCTCCTGGAAAATCTAAGATGAATTCAGCTGACTCAATTTCCCAAGTGGG
CTACGAAGACTTTTTGAGTAAAAAGCAAAGTGAACGAGGCAAAGAATTGC
AAAATGTGGGTCGTTCCGCTGGCTCTAACGTAGCGAAAAGAGCTGCTACC
GTTAAGCAAACATCTTACAAAGGGAAACCGGGCACACAGGCTGAGGAGCC
AAACCTTAATCAAGAATCTTGGAACAAGAAATGTGTCGTGGCTTGCAAAA
CTTCTCGACGTTGAATGTCTACCGGTAATCAAACCAACATTAAACTTGTA
CTCAAGAATGATACATGGGTCCCAAAGAAAAGTAATCACACCAGTGCCCT
CGAGCAGCATGGTTTAGACATGAAGAAAGTTCTCGGGGAAGGAGCATTTG
CCAAAGTGAAACAAGCTTTTTCTCATAAAGAGAAACGAGAAGTTGCGGTC
AAAGTATTCGAAAAACGTCGATTACCTTTCGATTATTTGAAACGATTCTT
ACCGAGAGAAATTCGCGTCTTGAATGCATTGCAACATCCTAATTTGGTCT
CCTTACTTGACGTTTTCGAAACAACATCTCGAGTTTATCTCGTTCTTGAG
TTTGCTGAGGGTGGAGATTTGTTGGAATTTATCAACCAAGATTCGTATAA
GAACGAAGCTCATGTGAAACGTCATTTCCAACAATTAATTGCTGGAATGA
GTTCGATGCATGGTCAGGGGATTGTTCACCGAGatttaaaatgtgaaaat
attttattggaCGCTCGTAACAATGTTAAAATTGCTGATTTTGGTTTTGC
TCGATTTACCGAAGCAGACGTGCTGCTGAAAACTATTTGTGGATCTTTCG
TTTACACCGCTCCAGAACTGATAGCAGGAGAACAAGATTATAGTGGCTTT
CTTGCAGACGCTTGGAGTACTGGTATCATTCTGTTTTGCATGCTATGTAG
AAAACTACCATTCACTAAAGATGAGTTGAATTTGATTGCTAAAGGGAAGA
ATTTGTTGGATAGACTTGAATTCCCTCATGCTATCACACACGACGCTCGT
GACGTGGTGTACGGTTTATTGGAACAAGATCCACTGAATCGTTTGAACGC
TTTCACCGTTCAAAAACATAAATGGTGTCATGGTTTCAAATCGGATCAAA
AGCCTTACCAACAAAAAGGCAAAGCCATCGACATCATTGAAGCGCCAAAT
ACGATTGCTAACAGTACTCGTGCTGAAAACGATCGCGCGCACATGCTATT
CGAAGTTGTGCGTCCGCAAGGCAAATTTGTTCGTGCTATTGAAAGACAAC
GGTTCAACCTTTTAGCTTTGAGTGTGTTCTCGAAGAACAAAAAGAGCGCC
CCACCTGACGCCCGTTTGTCATGTGTTCTATCACAATCACTACTGAAGCC
GCCCACAAATGCCCGCCAGAGGTTCAATCTAGTGACTAGTCTAGTCAAAT
GCGCCAATTCGCTTGCTAGTGAGCGGAGAGCAACTACAgctagtaaaaat
caaaaaaaatcccaaggtCGAACTATACTTAAAGATGTCGAGATGAAACA
AAAATCACCTCCTGGAAAATCTAAGATGAATTCAGCTGACTCAATTTCCC
AAGTGGGCTACGAAGACTTTTTGAGTAAAAAGCAAAGTGAACGAGGCAAA
GAATTGCAAAATGTGGGTCGTTCCGCTGGCTCTAACGTAGCGAAAAGAGC
TGCTACCGTTAAGCAAACATCTTACAAAGGGAAACCGGGCACACAGGCTG
AGGAGCCAAACCTTAATCAAGAATCTTGGAACAAGAAATGTGTCGTGGCT
TGCAAAACTTCTCGACGTTGAATGTCTACCGGTAATCAAACCAACATTAA
ACTTGTACTCAAGAATGATACATGGGTCCCAAAGAAAAGTAATCACACCA
GTGCCCTCGAGCAGCATGGTTTAGACATGAAGAAAGTTCTCGGGGAAGGA
GCATTTGCCAAAGTGAAACAAGCTTTTTCTCATAAAGAGAAACGAGAAGT
TGCGGTCAAAGTATTCGAAAAACGTCGATTACCTTTCGATTATTTGAAAC
GATTCTTACCGAGAGAAATTCGCGTCTTGAATGCATTGCAACATCCTAAT
TTGGTCTCCTTACTTGACGTTTTCGAAACAACATCTCGAGTTTATCTCGT
TCTTGAGTTTGCTGAGGGTGGAGATTTGTTGGAATTTATCAACCAAGATT
CGTATAAGAACGAAGCTCATGTGAAACGTCATTTCCAACAATTAATTGCT
GGAATGAGTTCGATGCATGGTCAGGGGATTGTTCACCGAGatttaaaatg
tgaaaatattttattggaCGCTCGTAACAATGTTAAAATTGCTGATTTTG
GTTTTGCTCGATTTACCGAAGCAGACGTGCTGCTGAAAACTATTTGTGGA
TCTTTCGTTTACACCGCTCCAGAACTGATAGCAGGAGAACAAGATTATAG
TGGCTTTCTTGCAGACGCTTGGAGTACTGGTATCATTCTGTTTTGCATGC
TATGTAGAAAACTACCATTCACTAAAGATGAGTTGAATTTGATTGCTAAA
GGGAAGAATTTGTTGGATAGACTTGAATTCCCTCATGCTATCACACACGA
CGCTCGTGACGTGGTGTACGGTTTATTGGAACAAGATCCACTGAATCGTT
TGAACGCTTTCACCGTTCAAAAACATAAATGGTGTCATGGTTTCAAATCG
GATCAAAAGCCTTACCAACAAAAAGGCAAAGCCATCGACATCATTGAAGC
GCCAAATACGATTGCTAACAGTACTCGTGCTGAAAACGATCGCGCGCACA
TGCTATTCGAAGTTGTGCGTCCGCAAGGCAAATTTGTTCGTGCTATTGAA
AGACAACGGTTCAACCTTTTAGCTTTGAGTGTGTTCTCGAAGAACAAAAA
GAGCGCCCCACCTGACGCCCGTTTGTCATGTGTTCTATCACAATCACTAC
TGAAGCCGCCCACAAATGCCCGCCAGAGGTTCAATCTAGTGACTAGTCTA
GTCAAATGCGCCAATTCGCTTGCTAGTGAGCGGAGAGCAACTACAgctag
taaaaatcaaaaaaaatcccaaggtCGAACTATACTTAAAGATGTCGAGA
TGAAACAAAAATCACCTCCTGGAAAATCTAAGATGAATTCAGCTGACTCA
ATTTCCCAAGTGGGCTACGAAGACTTTTTGAGTAAAAAGCAAAGTGAACG
AGGCAAAGAATTGCAAAATGTGGGTCGTTCCGCTGGCTCTAACGTAGCGA
AAAGAGCTGCTACCGTTAAGCAAACATCTTACAAAGGGAAACCGGGCACA
CAGGCTGAGGAGCCAAACCTTAATCAAGAATCTTGGAACAAGAAATGTGT
CGTGGCTTGCAAAACTTCTCGACGTTGAATGTCTACCGGTAATCAAACCA
ACATTAAACTTGTACTCAAGAATGATACATGGGTCCCAAAGAAAAGTAAT
CACACCAGTGCCCTCGAGCAGCATGGTTTAGACATGAAGAAAGTTCTCGG
GGAAGGAGCATTTGCCAAAGTGAAACAAGCTTTTTCTCATAAAGAGAAAC
GAGAAGTTGCGGTCAAAGTATTCGAAAAACGTCGATTACCTTTCGATTAT
TTGAAACGATTCTTACCGAGAGAAATTCGCGTCTTGAATGCATTGCAACA
TCCTAATTTGGTCTCCTTACTTGACGTTTTCGAAACAACATCTCGAGTTT
ATCTCGTTCTTGAGTTTGCTGAGGGTGGAGATTTGTTGGAATTTATCAAC
CAAGATTCGTATAAGAACGAAGCTCATGTGAAACGTCATTTCCAACAATT
AATTGCTGGAATGAGTTCGATGCATGGTCAGGGGATTGTTCACCGAGatt
taaaatgtgaaaatattttattggaCGCTCGTAACAATGTTAAAATTGCT
GATTTTGGTTTTGCTCGATTTACCGAAGCAGACGTGCTGCTGAAAACTAT
TTGTGGATCTTTCGTTTACACCGCTCCAGAACTGATAGCAGGAGAACAAG
ATTATAGTGGCTTTCTTGCAGACGCTTGGAGTACTGGTATCATTCTGTTT
TGCATGCTATGTAGAAAACTACCATTCACTAAAGATGAGTTGAATTTGAT
TGCTAAAGGGAAGAATTTGTTGGATAGACTTGAATTCCCTCATGCTATCA
CACACGACGCTCGTGACGTGGTGTACGGTTTATTGGAACAAGATCCACTG
AATCGTTTGAACGCTTTCACCGTTCAAAAACATAAATGGTGTCATGGTTT
CAAATCGGATCAAAAGCCTTACCAACAAAAAGGCAAAGCCATCGACATCA
TTGAAGCGCCAAATACGATTGCTAACAGTACTCGTGCTGAAAACGATCGC
GCGCACATGCTATTCGAAGTTGTGCGTCCGCAAGGCAAATTTGTTCGTGC
TATTGAAAGACAACGGTTCAACCTTTTAGCTTTGAGTGTGTTCTCGAAGA
ACAAAAAGAGCGCCCCACCTGACGCCCGTTTGTCATGTGTTCTATCACAA
TCACTACTGAAGCCGCCCACAAATGCCCGCCAGAGGTTCAATCTAGTGAC
TAGTCTAGTCAAATGCGCCAATTCGCTTGCTAGTGAGCGGAGAGCAACTA
CAgctagtaaaaatcaaaaaaaatcccaaggtCGAACTATACTTAAAGAT
GTCGAGATGAAACAAAAATCACCTCCTGGAAAATCTAAGATGAATTCAGC
TGACTCAATTTCCCAAGTGGGCTACGAAGACTTTTTGAGTAAAAAGCAAA
GTGAACGAGGCAAAGAATTGCAAAATGTGGGTCGTTCCGCTGGCTCTAAC
GTAGCGAAAAGAGCTGCTACCGTTAAGCAAACATCTTACAAAGGGAAACC
GGGCACACAGGCTGAGGAGCCAAACCTTAATCAAGAATCTTGGAACAAGA
AATGTGTCGTGGCTTGCAAAACTTCTCGACGTTGAATGTCTACCGGTAAT
CAAACCAACATTAAACTTGTACTCAAGAATGATACATGGGTCCCAAAGAA
AAGTAATCACACCAGTGCCCTCGAGCAGCATGGTTTAGACATGAAGAAAG
TTCTCGGGGAAGGAGCATTTGCCAAAGTGAAACAAGCTTTTTCTCATAAA
GAGAAACGAGAAGTTGCGGTCAAAGTATTCGAAAAACGTCGATTACCTTT
CGATTATTTGAAACGATTCTTACCGAGAGAAATTCGCGTCTTGAATGCAT
TGCAACATCCTAATTTGGTCTCCTTACTTGACGTTTTCGAAACAACATCT
CGAGTTTATCTCGTTCTTGAGTTTGCTGAGGGTGGAGATTTGTTGGAATT
TATCAACCAAGATTCGTATAAGAACGAAGCTCATGTGAAACGTCATTTCC
AACAATTAATTGCTGGAATGAGTTCGATGCATGGTCAGGGGATTGTTCAC
CGAGatttaaaatgtgaaaatattttattggaCGCTCGTAACAATGTTAA
AATTGCTGATTTTGGTTTTGCTCGATTTACCGAAGCAGACGTGCTGCTGA
AAACTATTTGTGGATCTTTCGTTTACACCGCTCCAGAACTGATAGCAGGA
GAACAAGATTATAGTGGCTTTCTTGCAGACGCTTGGAGTACTGGTATCAT
TCTGTTTTGCATGCTATGTAGAAAACTACCATTCACTAAAGATGAGTTGA
ATTTGATTGCTAAAGGGAAGAATTTGTTGGATAGACTTGAATTCCCTCAT
GCTATCACACACGACGCTCGTGACGTGGTGTACGGTTTATTGGAACAAGA
TCCACTGAATCGTTTGAACGCTTTCACCGTTCAAAAACATAAATGGTGTC
ATGGTTTCAAATCGGATCAAAAGCCTTACCAACAAAAAGGCAAAGCCATC
GACATCATTGAAGCGCCAAATACGATTGCTAACAGTACTCGTGCTGAAAA
CGATCGCGCGCACATGCTATTCGAAGTTGTGCGTCCGCAAGGCAAATTTG
TTCGTGCTATTGAAAGACAACGGTTCAACCTTTTAGCTTTGAGTGTGTTC
TCGAAGAACAAAAAGAGCGCCCCACCTGACGCCCGTTTGTCATGTGTTCT
ATCACAATCACTACTGAAGCCGCCCACAAATGCCCGCCAGAGGTTCAATC
TAGTGACTAGTCTAGTCAAATGCGCCAATTCGCTTGCTAGTGAGCGGAGA
GCAACTACAgctagtaaaaatcaaaaaaaatcccaaggtCGAACTATACT
TAAAGATGTCGAGATGAAACAAAAATCACCTCCTGGAAAATCTAAGATGA
ATTCAGCTGACTCAATTTCCCAAGTGGGCTACGAAGACTTTTTGAGTAAA
AAGCAAAGTGAACGAGGCAAAGAATTGCAAAATGTGGGTCGTTCCGCTGG
CTCTAACGTAGCGAAAAGAGCTGCTACCGTTAAGCAAACATCTTACAAAG
GGAAACCGGGCACACAGGCTGAGGAGCCAAACCTTAATCAAGAATCTTGG
AACAAGAAATGTGTCGTGGCTTGCAAAACTTCTCGACGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039251XLOC_039251Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062634-proteinTCONS_00062634-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062634-exon-scaffold_370-1491911889:330387..330565TCONS_00062634-exon-scaffold_370-1491911889:330387..330565Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1510915933:330387..330565TCONS_00062634-exon-scaffold_370-1510915933:330387..330565Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1575043694:330387..330565TCONS_00062634-exon-scaffold_370-1575043694:330387..330565Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1491911889:330962..331163TCONS_00062634-exon-scaffold_370-1491911889:330962..331163Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1510915933:330962..331163TCONS_00062634-exon-scaffold_370-1510915933:330962..331163Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1575043694:330962..331163TCONS_00062634-exon-scaffold_370-1575043694:330962..331163Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1491911889:331440..331680TCONS_00062634-exon-scaffold_370-1491911889:331440..331680Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1510915933:331440..331680TCONS_00062634-exon-scaffold_370-1510915933:331440..331680Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1575043694:331440..331680TCONS_00062634-exon-scaffold_370-1575043694:331440..331680Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1491911889:332483..332737TCONS_00062634-exon-scaffold_370-1491911889:332483..332737Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1510915933:332483..332737TCONS_00062634-exon-scaffold_370-1510915933:332483..332737Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1575043694:332483..332737TCONS_00062634-exon-scaffold_370-1575043694:332483..332737Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1491911889:333050..333175TCONS_00062634-exon-scaffold_370-1491911889:333050..333175Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1510915933:333050..333175TCONS_00062634-exon-scaffold_370-1510915933:333050..333175Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1575043694:333050..333175TCONS_00062634-exon-scaffold_370-1575043694:333050..333175Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1491911889:334356..335059TCONS_00062634-exon-scaffold_370-1491911889:334356..335059Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1510915933:334356..335059TCONS_00062634-exon-scaffold_370-1510915933:334356..335059Clytia hemisphaericaexon
TCONS_00062634-exon-scaffold_370-1575043694:334356..335059TCONS_00062634-exon-scaffold_370-1575043694:334356..335059Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:330387..335059 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.77096	2.30951	1.63575	1.39045	0.319384	0.353334	0.73077	0.399081	0.478981	0.296648	0.479889	0.709786	0.488284	0.572518	0.820341	0.981376	0.213349	0.564911	0.151056	0.342483	0.457969	0.502608	1.54783	1.0122	2.84792	3.17712	0.227323	0.381236	0.446874	0.937371
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR017441Protein_kinase_ATP_BS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00062634 vs. Swiss-Prot (Human)
Match: TSSK4 (Testis-specific serine/threonine-protein kinase 4 OS=Homo sapiens GN=TSSK4 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.601e-61
Identity = 112/318 (35.22%), Postives = 181/318 (56.92%), Query Frame = 1 
Query:  157 PKKSNHTSALEQHGLDMKKVLGEGAFAKVKQAFSHKEKREVAVKVFEKRRLPFDYLKRFLPREIRVLNALQHPNLVSLLDVFETTSRVYLVLEFAEGGDLLEFINQDSYKNEAHVKRHFQQLIAGMSSMHGQGIVHRDLKCENILLDARNNVKIADFGFARFTEADV----------------LLKTICGSFVYTAPELIAGEQDYSGFLADAWSTGIILFCMLCRKLPFTKDELNLIAKGKNLLDRLEFP--HAITHDARDVVYGLLEQDPLNRLNAFTVQKHKWCHGFKSDQKPYQQKGKAIDIIEAPNTIANSTR 1056
            P  + + S ++++G ++ K +G G++  V +AF  K+K  VAVK+  K++   DYL +FLPREI+V+  L+H  L++     E+TSRVY++LE A+GGD+LE+I +    +E    + F QL  G++ +H + IVHRDLK EN+LLD   NVKI+DFGFA+   ++                 L +T CGSF Y  PE++ G   Y+ FL+D WS G+IL+ ++   LPF  D+ NL    +     + FP  H I+ + ++++  +L Q    R     + K  W   F+ +Q  ++     I ++EA   + N+T+
Sbjct:   11 PTTTAYHSLMDEYGYEVGKAIGHGSYGSVYEAFYTKQKVMVAVKIISKKKASDDYLNKFLPREIQVMKVLRHKYLINFYRAIESTSRVYIILELAQGGDVLEWIQRYGACSEPLAGKWFSQLTLGIAYLHSKSIVHRDLKLENLLLDKWENVKISDFGFAKMVPSNQPVGCSPSYRQVNCFSHLSQTYCGSFAYACPEILRG-LPYNPFLSDTWSMGVILYTLVVAHLPF--DDTNLKKLLRETQKEVTFPANHTISQECKNLILQMLRQ-ATKRATILDIIKDSWVLKFQPEQPTHE-----IRLLEAMCQLHNTTK 319
The following BLAST results are available for this feature:
BLAST of TCONS_00062634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSSK44.601e-6135.22Testis-specific serine/threonine-protein kinase 4 ... [more]
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