TCONS_00062633 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062633
Unique NameTCONS_00062633
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1650

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062633 ID=TCONS_00062633|Name=TCONS_00062633|organism=Clytia hemisphaerica|type=transcript|length=1650bp
CTCGGccttattttcgaatgttttcatgTTCGAAGTTCGAATTCGAATCT
TGTTCgaaatcgaatgtttatgttCTTATCCATAATGGTAGTCAAAAACA
TTCCATCGTTacggaaaacaaaaacattggcTCTCagatcaaaaatcaag
aaaatacaGAAGAAAGTGTGGACATTATCATCATTTAaatctttattgaa
aaaaaatcattatttataACTTTTCTAGATCAGCTGGACAAGCTCTTCGA
TTTTCAAAGTATTCTTGCATTATGTCTAATGAGGACAGCAAGGAAAATTT
GCTATCTTTACACTTGCACCATTTCGCACGTAAAAACAGACCGCTCAGTC
CGTTCATCTCCAAATTACGGTTCTTGTTAAACTGCACCAAACATCAAGAT
GCTATACATTGGTCGTCAGATGGTAGAGCTATCGTTATCACAAATGTTGA
AGTTTTCAAACAATCTGTCCTGGACAATGAAGCAGaaatgttcaaaacaa
aaaattttacttCCTTTGTCAGGCAACTCAATCTCTATGGTTTTCGAAAG
GTACCTAGTAACGGGAAATCCGATCCTGCAACAAACATGAAATTTGAACA
CACTAATTTCCGAAGAGAACGCCCAGATCTCATGCAATACATTCAAAGAA
CGTGCGTTGTGGGTGGAAAACGGAAAGGGGAACTACTTACCACTTTCAGT
CCAGAGACACGCCCTTTGGCAATGAAAAAAGCAACGCCCATTTTATACAT
TAAACACGATAACAAAGAGAATATATTTCAACATCAAATTCAAAGTGGAC
TCAATGCTGGTAGTATTGTTGGAAAACCTCTTGGTCTCTCTATACTTAAA
GCTGTCAGCACAAATATACCAGGATCTTCAAATGTTTCTTTGATCAACAA
TCAACACTTTGCCATCAACGTCAAACCCAACATACGAACTGTTTTTGCAC
CATCCAAAAATGTCCTATCAACTGACACCAAAATCATCTCTTTCAGCCAG
ATTATTGAGCAAAACGTCAAAAGTTCGCCACCTGTACCTCGCACTTCTTC
ACCACAACAAACTCATCAACCAATGGTAGCAGATCCTACAACCGAAAATT
TACACATCTCAGACAATCCACCAAACACGACCAACAATGATTCAACCACC
GAACCCATTCTCTACTCAGTTACCGATTTACCAAATACATCAAGCGAGCA
TGATTATGCTTTACCGACAACACCCGACAAATTTCCGATCGTTCCCGACG
AGAAGCCGGCAATTCACCCGACAAATACATCATCGCCGAAATCCCCTCCA
ATGATTACCGATCAAgatatttatcaatttttaaacgAGAATTTCAGTGC
TGAGAAAGAAGTCGTACAATCCTTGTTAAGTTTACCTGAAAGTCAACCTG
AtcaaatttttgatgatttgaagACGCTAGCTGAAGTCTCCTCAAACCCT
CTGCTTGGTGTTGATAACGTTATCAAACTGCAAAGTGGTAATGCAACACC
TAGAGAAACTGTGGTTTCTGTAAACCATATTTGAAAGAACGATTANTGTA
GTGCAACACCTAGAGAAACTGTGGTTTCTGCAAACCATATTTGAAAGAAC
GATTAAGCGGTCCCTTTCTCTAGATGTAACGTCTAGTCAAAAATTCTGAC
Run BLAST on NCBI

transcript from alignment at scaffold_370:324423..329499+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062633 ID=TCONS_00062633|Name=TCONS_00062633|organism=Clytia hemisphaerica|type=transcript|length=5077bp|location=Sequence derived from alignment at scaffold_370:324423..329499+ (Clytia hemisphaerica)
CTCGGccttattttcgaatgttttcatgTTCGAAGTTCGAATTCGAATCT
TGTTCgaaatcgaatgtttatgttCTTATCCATAATGGTAGTCAAAAACA
TTCCATCGTTacggaaaacaaaaacattggcTCTCagatcaaaaatcaag
aaaatacaGAAGAAAGTGTGGACATTATCATCATTTAaatctttattgaa
aaaaaatcattatttataACTTTTCTAGATCAGCTGGACAAGCTCTTCGA
TTTTCAAAGGTAGTTTTTCTtcgttttcaaagattttagtcGGTGTTTTT
CCAAGATGACCTTGTTAGTCATCGTCCCCAATTCGCCAAATCATTTTTAC
ATTTGATGGATCTGTGTGTCCCCGATTTATCTCCCTGGGGAGGTGGGGTA
CTGGGGTATGAATgtcccaaaaatctaaaaaaaatttagtttctcTACCC
TCTACATCCTATGGGCGGTGATTTTGTCAAAAGCAACTGCATTAGCTGCA
GCAGAAGGGTTTCTGCTGGTTGATCTTTGCATTAGTAACTGAAAAATAGT
GAGAAAAGGAGACAGTCTATATTTCCAAATAATCTTGGATTTTTATCAGA
ATTttctccaatttttcaaaaagctaaTGAAATATTATCTTGAAAGCTTT
AATTaaccaatgaaaaatgaattgtaAAGGTaaaactgcaaagggtggtg
gtatGGAATTATTAGCTACAAAAAAAGACTTACACCGATGTCTGGTTAGT
AAAAACTGCTGGTCCAAATTTTCGGAAACCGCGTTTCTCAGGAATCGTAG
GGTTTGTCAGGACTTTTTAATCGATATTTAGCCTTTTGATTGAGGGGTAA
AAAAACATAActtgttttttcatttgccGTCGTAGGcactgaaattagat
ttattttgaACGGACGTagatttatttaaatattttttctgtttgCTTTT
TCAGTATTCTTGCATTATGTCTAATGAGGACAGCAAGGAAAATTTGCTAT
CTTTACACTTGCACCATTTCGCACGTAAAAACAGACCGCTCAGTCCGTTC
ATCTCCAAATTACGGTTCTTGTTAAACTGCACCAAACATCAAGATGCTAT
ACATTGGTCGTCAGATGGTAGAGCTATCGTTATCACAAATGTTGAAGTTT
TCAAACAATCTGTCCTGGACAATGAAGCAGaaatgttcaaaacaaaaaat
tttacttCCTTTGTCAGGCAACTCAATCTCTATGGTTTTCGAAAGGTaac
tgaaaaatgtttttatatgcaAGCTTCCCTTtgtctgttttttttctcgc
tcATCAAACTCTTCTGTCCTGGAGTCGTGTGACCAATGTgactagcctag
aaatctaagctactttaggcgtacaaactttcgcgagcagaaactttcgc
gaggacgaaaaatcgcgaaattcatgacatttactttcgcgaatttaacg
gaaaaatatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNaaaaatatttttcgcgagcataaactttcgcgaa
tcaagaagtaaaattgagaattttcacatgaaaaaatggcttagagggtc
aaatacttcttggattgacttgaaatatttgtcttttgacttattagtat
tttagcaggctaaaaagtgccataaaagttacattttattcaaagtttga
agtttaacagattttctattttgtcaagagtttttcgcgagcataaactt
tcgcgaatggcccttcctagaatttttaaagacatttactttcgcgaaaa
gggccaaaattcgcgaaaatcgcgaaagtttctgctcgcgaaagtttcta
cgcctaaagtagtttgattcagtcacttggataaatctgatggttaagtt
gtgactgaataactattCCAAgcagggggggtcggtagtaaaatctcaga
cataatgacgtgtactacggtggtggtgtgacaaaaaatcgaaaaaaatt
tttactacctagggtagttaaatactaaaataggtggtatctatgtgctg
gttaaatgttgaaaaaattttactacctgggtagttaaaactggtaaaat
tagcaaattttagctatttttgtaattcttttaattttttggatgacttt
tctgaaaatatctgaaaatttttaaaagttgaaaaaattttctgttggaa
agttgctTGCTccaccaaaaaataggtggtctttatgacaaattgtccca
aaaacttttactaccagggtagtaaaatacctcttccaaaagtctgggtg
gtggtatgtaaaaattcgtaAAAATCCTTTTACTACTCATATATGTCTGA
GATTTTACTACCGACCCCCCCCCCCTGTTCCAAGGCAAACTTAAAATCCA
TAAATATAAAAAAtcttaaagcgccgaaaacgctatattgcatAAGCCgc
gtgtcctagccttgtgaatacgggcttagttaactaggctacaATGTGAC
CAACGACCTCTAGAaacaaacttgatttttttgtctTAAGATGTTTCGAA
CTAAACGAAGCTTCACGAGGCTTCCAGTCCTCCTCGCCTAATTATTTTGC
AAGGAGGCTTTTACTACCTTGAGAGGATATCATTATAATCTTGTTGCAAT
CTTTTTTTCTACAATTTCTTTCTCAGGTACCTAGTAACGGGAAATCCGAT
CCTGCAACAAACATGAAATTTGAACACACTAATTTCCGAAGAGAACGCCC
AGATCTCATGCAATACATTCAAAGAACGTGCGTTGTGGGTGGAAAACGGA
AAGGGGAACTACTTACCACTTTCAGTCCAGAGACACGCCCTTTGGCAATG
AAAAAAGCAACGCCCATTTTGTAAGTATGTTTCTTtctcggaattttttt
ttattgaaacaagATTTTCATTCGACACTCAGGGATAATAGGGATTACTA
TCTAGCTTTCTTTCTCGAACGAATTTTTTATCCTTAGCACACGGTTTTGT
AGAGATTTGAGATTCAGACTATAGAATGTTCTTGTCAACAAGTACCAGCT
TTTACTCTTGTTGCTTTACTTCAACCAGTGTTACCATTATAAGTACCTCG
TTATGCTCATTTCAGATACATTAAACACGATAACAAAGAGAATATATTTC
AACATCAAATTCAAAGTGGACTCAATGCTGGTAGTATTGTTGGAAAACCT
CTTGGTCTCTCTATACTTAAAGCTGTCAGCACAAATGTAAGCATACAATG
TCTATGTTTATGTTCAAAATAAATCCCTTTgacttttataagaaccagta
aattttggctgagcTTGAGACTGATgttaaatttctattgttccaaacaa
tAGAGGTATTGTTCTGAGGGCCTAAATCTGAGGCTGATGTTCTTGCGACT
TTTGGAATAAATGACATTCGCGACGGAATCTTTTATCGGAAATATCAGAA
ATATCCTAGACATCTATCATATTTATCACGATTCAAATTTGACATCGCTA
AAAAATACCCGGTTTTTACGAGTTACAGATGGTTCCTTTCCCCCTTTTAG
ATACCAGGATCTTCAAATGTTTCTTTGATCAACAATCAACACTTTGCCAT
CAACGTCAAACCCAACATACGAACTGTTTTTGCACCATCCAAAAATGTCC
TATCAACTGACACCAAAATCATCTCTTTCAGGTTTGTCTCACCTTTGACG
CCTCTTTTCCCTGCACTTAGCTATGTACATTCACATTTCCAAAACGgaat
ttcaaactttaaacTTTCTGAGTGGCTTTCAAGGCAAATGAAACAAGTTT
AACATATCAACTATGATATcgttggaaaaattcttttcctcgGCTATTGA
AAATGCCAGAACTTATTTTCTTGAGTCTCAAAAATGGCCGGGAGTATTGA
CCAAATTAGTGACAATTATTGTTAATGAGTTTTTAAAACTCAAGTCTCGA
TGTTTTATCAAACTATCATGAATCCTACAACGTTAATTGAACGAACGTTA
AACCAATATTGTATCCCcaagggggtacttaggcaaaatgggtgccggat
TATGTGCGAGTCatagggtccctttttcacactcCCAAAACTCAAagctc
aaaggggtacaaaaaccattaaaaagcaaatgaGTCTCTgcaagggttcc
aaaattacgaaaatcaaaaatcaactcCTTCATACGTTCATAAGTTCTTA
AAATTTAgattaagatttaaaaaatttggctAGAATTTTAGGGAAATAGC
CTCTCTAAGGGCGGCAAAAAcgtcgaaattcagtctctctaaaggtcaAT
TTTCCTAAATAATTAACAAATTGACCCAATCTGTTACGCAGTTTTTTATT
ACACAATTCGATTGAATTTTCAGCCAGATTATTGAGCAAAACGTCAAAAG
TTCGCCACCTGTACCTCGCACTTCTTCACCACAACAAACTCATCAACCAA
TGGTAGCAGATCCTACAACCGAAAATTTACACATCTCAGACAATCCACCA
AACACGACCAACAATGATTCAACCACCGAACCCATTCTCTACTCAGTTAC
CGATTTACCAAATACATCAAGCGAGCATGATTATGCTTTACCGACAACAC
CCGACAAATTTCCGATCGTTCCCGACGAGAAGCCGGCAATTCACCCGACA
AATACATCATCGCCGAAATCCCCTCCAATGATTACCGATCAAgatattta
tcaatttttaaacgAGAATTTCAGTGCTGAGAAAGAAGTCGTACAATCCT
TGTTAAGTTTACCTGAAAGTCAACCTGAtcaaatttttgatgatttgaag
ACGCTAGCTGAAGTCTCCTCAAACCCTCTGCTTGGTGTTGATAACGTTAT
CAAACTGCAAAGTGGTAATGCAACACCTAGAGAAACTGTGGTTTCTGTAA
ACCATATTTGAAAGAACGATTANTGTAGTGCAACACCTAGAGAAACTGTG
GTTTCTGCAAACCATATTTGAAAGAACGATTAAGCGGTCCCTTTCTCTAG
ATGTAACGTCTAGTCAAAAATTCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039250XLOC_039250Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062633-exon-scaffold_370-1491911889:324423..324681TCONS_00062633-exon-scaffold_370-1491911889:324423..324681Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1510915933:324423..324681TCONS_00062633-exon-scaffold_370-1510915933:324423..324681Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1575043694:324423..324681TCONS_00062633-exon-scaffold_370-1575043694:324423..324681Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1491911889:325377..325667TCONS_00062633-exon-scaffold_370-1491911889:325377..325667Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1510915933:325377..325667TCONS_00062633-exon-scaffold_370-1510915933:325377..325667Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1575043694:325377..325667TCONS_00062633-exon-scaffold_370-1575043694:325377..325667Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1491911889:327149..327342TCONS_00062633-exon-scaffold_370-1491911889:327149..327342Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1510915933:327149..327342TCONS_00062633-exon-scaffold_370-1510915933:327149..327342Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1575043694:327149..327342TCONS_00062633-exon-scaffold_370-1575043694:327149..327342Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1491911889:327588..327708TCONS_00062633-exon-scaffold_370-1491911889:327588..327708Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1510915933:327588..327708TCONS_00062633-exon-scaffold_370-1510915933:327588..327708Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1575043694:327588..327708TCONS_00062633-exon-scaffold_370-1575043694:327588..327708Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1491911889:328023..328153TCONS_00062633-exon-scaffold_370-1491911889:328023..328153Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1510915933:328023..328153TCONS_00062633-exon-scaffold_370-1510915933:328023..328153Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1575043694:328023..328153TCONS_00062633-exon-scaffold_370-1575043694:328023..328153Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1491911889:328846..329499TCONS_00062633-exon-scaffold_370-1491911889:328846..329499Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1510915933:328846..329499TCONS_00062633-exon-scaffold_370-1510915933:328846..329499Clytia hemisphaericaexon
TCONS_00062633-exon-scaffold_370-1575043694:328846..329499TCONS_00062633-exon-scaffold_370-1575043694:328846..329499Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:324423..329499 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.151739	0	0	0.59447	0.165819	0.600161	0.741879	0.131125	0.487257	0.157648	0.310894	0.696617	0.107473	0.530143	0.451068	0.116811	0.239456	1.09922	0.17309	0.714127	0.602362	0.309928	0	14.1917	11.779	0	0.468374	0.172708	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062633 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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