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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062625 ID=TCONS_00062625|Name=TCONS_00062625|organism=Clytia hemisphaerica|type=transcript|length=1367bp
GATCAAGAAGTCACTCTCTTTCAAAAACTGACTGAAAAGGTATAAAATTT
TTGTATATTCTTTACATTTCTTAGTAATTTTTCACTTGAAAGTCATCTAA
AATGAGTACCAAAGAGTTATACAACAAATTTAAGATCAAGGCtagcaaca
aaaacaaatatgaTGCCGGTCTTAGAGACCTTTTTGGTTGTGTTgaaaaa
aacatcaaagaacATGGTCATGAGCCTATGGCCAACAGAAATATCATCCC
AAACAAGGGTCATGTTGTCAGTCAAGATCCTGAGAACTATCCAGCCACAG
ACCATCTCTTTGAGTTGAAAGCACACTACAAAATTGAAGATTTCAAGCGT
AATTTTGTCTTGATCATTGAGGATATGGAAGTTGGCTACGAGGGCTATGT
GAGACATTGTATTCCCAATGTAAAAAAACTCATAACACAATTTAGAGAAA
GTAAACTACCAATCGTATGGACCAATTGGTCAAGAagGCATGATGATGGA
CATTACAATGCTGTCGACAGATATTATGGTCCTCAAGCTGTAACAGAAGG
AACTAACCCATGCTATATTGCAGGTGAAGATGGTATTGATACTGTAGCTG
AGCTTGCTCCTCAAACCCAAGATGAGTATTCCTGCTCAATTGATTCTCTT
CACTTATCCAAATTTGCTGATTTAGATGATGATGGGCGTGAAATTCTTTT
CCCAATGCTCGAGGCTTGGGGTGTGAACACCATTGTTCTATGTGGAGCAT
GGACTGATGATTGTTTATTGACAACTATTTTTGATGCTGTTGATAAATAT
GGTTATGATCTTATCCTTGTAAGAGACGGTGTTGCAACAGCCACCGTTTG
GGGAGATCCAATTTTAGAAGCCCTCATGGCCTCAACTTGCTGTGATATGA
CATGTGAAGGAATTGTCAAACATCTGAAAGAACACCCTGATCTTGTTGAA
GCACCAAAAGCACCCTTAAATGGAAATGTttataaaaccaaaacaaatta
cAGGGAAGACAGAATGCAAAAGGAAATTGATGCATTaaaagaaagaatca
aagagctTGAAGCAAAATAACTTTGGCCAATAGGCTTTACaaacattaga
aaaatatttcattatcTTTTCATTTCAATTAAACTTggtatatttattat
tttagaatATTTAGTTACCCTTTATGAATATTTAGTTTTGTTCTGTTTTA
TGTACATTAAGTACGTACATTATTATTTAtgtttaaaagtaaaaataagc
aGATGCTATTAGAATGAATTTGTGTAAAATGATCATAATCACCTTAGTCT
AGACTttttaaactcctatatcaggattagaaactagggcTAGTCTTact
tcttttatctttccctt Run BLAST on NCBI transcript from alignment at scaffold_370:177082..178698+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062625 ID=TCONS_00062625|Name=TCONS_00062625|organism=Clytia hemisphaerica|type=transcript|length=1617bp|location=Sequence derived from alignment at scaffold_370:177082..178698+ (Clytia hemisphaerica)
GATCAAGAAGTCACTCTCTTTCAAAAACTGACTGAAAAGGTATAAAATTT
TTGTATATTCTTTACATTTCTTAGTAATTTTTCACTTGAAAGTCATCTAA
AATGAGTACCAAAGAGTTATACAACAAATTTAAGATCAAGGCtagcaaca
aaaacaaatatgaTGCCGGTCTTAGAGACCTTTTTGGTTGTGTTgaaaaa
aacatcaaagaacATGGTCATGAGCCTATGGCCAACAGAAATATCATCCC
AAACAAGGGTCATGTTGTCAGTCAAGATCCTGAGAACTATCCAGCCACAG
ACCATCTCTTTGAGTTGAAAGCACACTACAAAATTGAAGATTTCAAGCGT
AATTTTGTCTTGATCATTGAGGATATGGAAGTTGGCTACGAGGGCTATGT
GAGACATTGTATTCCCAATGTAAAAAAACTCATAACACAATTTAGAGAAA
GTAAACTACCAATCGTATGGACCAATTGGTCAAGAaggtaaattgctttt
tttcatTGGTATAATATATAGCtttttatagaccttttttcaaagaggcc
accctgttgaataattatctagtccagcagaaaaacaatcacttttcaga
ctttttggGAAACTACTGTATCATTAAAGACTTTCTTTGAGACTGAGAAC
ACATTATTTAATGCTAATAATACTCGCTCCCTAGTTTCTGAGTATATGAC
AATATTCTTTTAAAATACTGTATTTCTCACATTTCAGGCATGATGATGGA
CATTACAATGCTGTCGACAGATATTATGGTCCTCAAGCTGTAACAGAAGG
AACTAACCCATGCTATATTGCAGGTGAAGATGGTATTGATACTGTAGCTG
AGCTTGCTCCTCAAACCCAAGATGAGTATTCCTGCTCAATTGATTCTCTT
CACTTATCCAAATTTGCTGATTTAGATGATGATGGGCGTGAAATTCTTTT
CCCAATGCTCGAGGCTTGGGGTGTGAACACCATTGTTCTATGTGGAGCAT
GGACTGATGATTGTTTATTGACAACTATTTTTGATGCTGTTGATAAATAT
GGTTATGATCTTATCCTTGTAAGAGACGGTGTTGCAACAGCCACCGTTTG
GGGAGATCCAATTTTAGAAGCCCTCATGGCCTCAACTTGCTGTGATATGA
CATGTGAAGGAATTGTCAAACATCTGAAAGAACACCCTGATCTTGTTGAA
GCACCAAAAGCACCCTTAAATGGAAATGTttataaaaccaaaacaaatta
cAGGGAAGACAGAATGCAAAAGGAAATTGATGCATTaaaagaaagaatca
aagagctTGAAGCAAAATAACTTTGGCCAATAGGCTTTACaaacattaga
aaaatatttcattatcTTTTCATTTCAATTAAACTTggtatatttattat
tttagaatATTTAGTTACCCTTTATGAATATTTAGTTTTGTTCTGTTTTA
TGTACATTAAGTACGTACATTATTATTTAtgtttaaaagtaaaaataagc
aGATGCTATTAGAATGAATTTGTGTAAAATGATCATAATCACCTTAGTCT
AGACTttttaaactcctatatcaggattagaaactagggcTAGTCTTact
tcttttatctttccctt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062625-exon-scaffold_370-1491911889:177082..177568 | TCONS_00062625-exon-scaffold_370-1491911889:177082..177568 | Clytia hemisphaerica | exon |
| TCONS_00062625-exon-scaffold_370-1510915933:177082..177568 | TCONS_00062625-exon-scaffold_370-1510915933:177082..177568 | Clytia hemisphaerica | exon |
| TCONS_00062625-exon-scaffold_370-1575043694:177082..177568 | TCONS_00062625-exon-scaffold_370-1575043694:177082..177568 | Clytia hemisphaerica | exon |
| TCONS_00062625-exon-scaffold_370-1491911889:177819..178698 | TCONS_00062625-exon-scaffold_370-1491911889:177819..178698 | Clytia hemisphaerica | exon |
| TCONS_00062625-exon-scaffold_370-1510915933:177819..178698 | TCONS_00062625-exon-scaffold_370-1510915933:177819..178698 | Clytia hemisphaerica | exon |
| TCONS_00062625-exon-scaffold_370-1575043694:177819..178698 | TCONS_00062625-exon-scaffold_370-1575043694:177819..178698 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_370 | supercontig | scaffold_370:177082..178698 + |
Blast
The following BLAST results are available for this feature:
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