TCONS_00062611 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062611
Unique NameTCONS_00062611
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062611 ID=TCONS_00062611|Name=TCONS_00062611|organism=Clytia hemisphaerica|type=transcript|length=464bp
TTGGCGTCTTCTTTTATTGGGCGGGAGATTGGGATGATATCAATCTTCCG
TTCGTACACACGGGGCAGGACTGGGGGTGGTACCGTTGGGTTTTTCTTTC
TAACCAATTCAGATGGAGAAATGGCGGCACCACCACACCAACAAAGGACT
AACTACTGGGTGGGGTCATATAATTGATGGACACAACCTGACAACAGACA
ACACGACACGAACTATCTGTAACTTTTGAATATGATGATTTACAAAATGG
TAAACGTTAAAAATGTATAACcataattcaaaaagtcaaaatgtaaTAAT
ATAAAGCATGGCTTATAATAAATGTTGGGTTTGTCTTTTCCTTGCTCTAT
TCTCTTGTTGTTATTTCCCCAGTTTCCCTTCAATGTCGAACCGATTTCCT
AAAAGAAAGAGACAAGAGactcaaactttcaaaccaaTACAAATCGTTGG
CGGTGAGGGCGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_370:4092..4662+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062611 ID=TCONS_00062611|Name=TCONS_00062611|organism=Clytia hemisphaerica|type=transcript|length=571bp|location=Sequence derived from alignment at scaffold_370:4092..4662+ (Clytia hemisphaerica)
TTGGCGTCTTCTTTTATTGGGCGGGAGATTGGGATGATATCAATCTTCCG
TTCGTACACACGGGGCAGGACTGGGGGTGGTACCGTTGGGTTTTTCTTTC
TAACCAATTCAGATGGAGAAATGGCGGCACCACCACACCAACAAAGGACT
AACTACTGGGTGGGGTCATATAATTGATGGACACAACCTGACAACAGACA
ACACGACACGAACNTTCAGATGGAGAAATGGCGGCACCACCACACCAACA
AAGGACTAACTACTGGGAAGGGTCATATAATTGATGGAGACAACCTGACA
ACAGACAACACGACACGAACTATCTGTAACTTTTGAATATGATGATTTAC
AAAATGGTAAACGTTAAAAATGTATAACcataattcaaaaagtcaaaatg
taaTAATATAAAGCATGGCTTATAATAAATGTTGGGTTTGTCTTTTCCTT
GCTCTATTCTCTTGTTGTTATTTCCCCAGTTTCCCTTCAATGTCGAACCG
ATTTCCTAAAAGAAAGAGACAAGAGactcaaactttcaaaccaaTACAAA
TCGTTGGCGGTGAGGGCGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039237XLOC_039237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062611-exon-scaffold_370-1491911889:4092..4304TCONS_00062611-exon-scaffold_370-1491911889:4092..4304Clytia hemisphaericaexon
TCONS_00062611-exon-scaffold_370-1510915933:4092..4304TCONS_00062611-exon-scaffold_370-1510915933:4092..4304Clytia hemisphaericaexon
TCONS_00062611-exon-scaffold_370-1575043694:4092..4304TCONS_00062611-exon-scaffold_370-1575043694:4092..4304Clytia hemisphaericaexon
TCONS_00062611-exon-scaffold_370-1491911889:4412..4662TCONS_00062611-exon-scaffold_370-1491911889:4412..4662Clytia hemisphaericaexon
TCONS_00062611-exon-scaffold_370-1510915933:4412..4662TCONS_00062611-exon-scaffold_370-1510915933:4412..4662Clytia hemisphaericaexon
TCONS_00062611-exon-scaffold_370-1575043694:4412..4662TCONS_00062611-exon-scaffold_370-1575043694:4412..4662Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_370supercontigscaffold_370:4092..4662 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.18173	0	0	0.217776	0.492051	1.2483	0.94453	1.54362	1.307	1.14142	1.28447	1.3287	1.9262	0.0790017	0.0847809	0	0	0	0	0.492659	0.393677	0.159522	0	1.62728	2.13619	0	0	0.308843	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062611 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top