TCONS_00062609 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062609
Unique NameTCONS_00062609
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1677

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062609 ID=TCONS_00062609|Name=TCONS_00062609|organism=Clytia hemisphaerica|type=transcript|length=1677bp
GGGGGGGGGTAATGTGGTTCTTCGAAAAATTATCaacagataaaaaatgt
tttgggtGTCTCATTAAAAAgagttttcaaagattttgtatGTAATCTTT
TTGTTCCTCTTCAGTTACAGGGACTATTTGACTAAACTATCAAGGAGACT
TGACATGACGAATTAACAGCTCAAAAAGACAGTGACACAAACAAAGAcaa
tgacaaaaacaaaaacaaagacaataacaaaaagcaaaaacaaacacAAC
AGACAATGACGCCTCTGTAATTTAGCTTATGGAATTTTCgtggaaatttg
atttttgagggTTTGAGTATCGTCCGCGAATTAGGTCTTAAAGGAAATCT
GGGAAGACTGTTTTCCGCGAAGTAGAAAAATAAATCAGCAATGTCAAGTA
ACTATCAAAATCTTTACTAGCATCCAATCCGTAATTTAATGACTAAAATT
CGAAATCCGCGAAAGTCCTtgtgaaagtttatcccatttaAAAGGTTGAC
TTAGTTTTATTAGTTCTGTTAGTTTCTGAAAAAACATGTCGGACCTGGTT
AATGAAAAAGGATGCACTGCACTGTGTTTCCATCATTCTTACTTAAACGG
AAACATGAAAACTACTCTTCAATTCTTATTCATTCAATTTCCGTTTTCTT
CAGCACCTGCAGATTGGAAGCACTCCTATTACCTCAAACTTAAAGATTTC
TACAAAGAGTCTGCTTTAGTTCTAATGAGCGAAAAAGTATGTGACGCTGC
AATGCACCAACGTAAAGCTAAAAGACTCGAGCGAAGCTTAACATCGTTTG
AAAAGGTTCATAAAATAGCTAAAAGATGGAAAACCACAGAGAGCCAATTT
CGCAATCAACATCTGTCTTTTTTGCAAGAAAAGTCGAACGAAACAGCATC
CACACTGTACAGCAGGTGCTCCGAAAGACTAATGTTGCTAACTCTAAAGA
AACGATATGCAGATGGTTCAGCTATAGCAACGAGGTTGAGCAAACAAATC
AATAAAGTGTGcaaagaaataaagaatttaTTGGCTTCATACAATTCCAT
GCGATCAGAGATTTCGCCTAAATTCAAACCTGTTGATTATAAAGAGGCTC
TAGATGTCAAGTCTTCAATATATAACGAAATAAATCTTGTATCCAACTTG
GATGAGGCAAGAAGTTCACAAGTCCCTATCAACGTAGTGAAGTCACTCGT
ACAATTCTACCTCAGAAAACAAAGAGCACAAGAAGAAATAATTATCGTCG
AGGAAGAAATGAGATCGACATTGCACTTTTGGGAAAATCAATTGACTTTT
CTTGATGAATGTGCTTCACACCAAACTTCTGTTGGGATTAGATACCTCTT
AAGAGAAAGAATCTTGATTGTGAAGAACTTCCTTGGGgatttaaaaaaac
tctttGAGTTTGCTACCGAGCCAGTAGAACGAGTAGAAATTAATCACACG
AATAATCATATCTCCTTGAATGGCTCCGAAAATGAAGAGTACCTATTCAG
TGATCAAGATTTTTCGAGCGATGAAGAAGCCATATCATCTGGTGACAGTG
ACAGCGACACTGGTGACTCTGTTTTAAGTGATGACTTGTACATATAAATT
ATTTTGCCAATGATGTTTGCTATTTTTTACTGTTGTATATAACTATCGTT
AcaaagaaaagcattttttacCTGCGT
Run BLAST on NCBI

transcript from alignment at scaffold_37:52658..55465-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062609 ID=TCONS_00062609|Name=TCONS_00062609|organism=Clytia hemisphaerica|type=transcript|length=2808bp|location=Sequence derived from alignment at scaffold_37:52658..55465- (Clytia hemisphaerica)
GGGGGGGGGTAATGTGGTTCTTCGAAAAATTATCAACAGATAAAAAATGT
TTTGGGTGTCTCATTAAAAAGAGTTTTCAAAGATTTTGTATGTAATCTTT
TTGTTCCTCTTCAGTTACAGGGACTATTTGACTAAACTATCAAGGAGACT
TGACATGACGAATTAACAGCTCAAAAAGACAGTGACACAAACAAAGACAA
TGACAAAAACAAAAACAAAGACAATAACAAAAAGCAAAAACAAACACAAC
AGACAATGACGCCTCTGTAATTTAGCTTATGGAATTTTCGTGGAAATTTG
ATTTTTGAGGGTTTGAGTATCGTCCGCGAATTAGGTCTTAAAGGAAATCT
GGGAAGACTGTTTTCCGCGAAGTAGAAAAATAAATCAGCAATGTCAAGTA
ACTATCAAAATCTTTACTAGCATCCAATCCGTAATTTAATGACTAAAATT
CGAAATCCGCGAAAGTCCTTGTGAAAGTTTATCCCATTTAAAAGGTTGAC
TTAGTTTTATTAGTTCTGTTAGTTTCTGAAAAAACATGTCGGACCTGGTT
AATGAAAAAGGATGCACTGCACTGTGTTTCCATCATTCTTACTTAAACGG
AAACATGAAAACTACTCTTCAATTCTTATTCATTCAATTTCCGTTTTCTT
CAGCACCTGCAGATTGGAAGCACTCCTATTACCTCAAACTTAAAGATTTC
TACAAAGAGTCTGCTTTAGTTCTAATGAGCGAAAAAGTATGTGACGCTGC
AATGCACCAACGTAAAGCTAAAAGGTAAATGGTTAAGACAAATCATAATA
AAATGTATTCTTTCATTTTATTTATCATTGAAAATTTTTTTAATCCTTCA
AAATCTTTCACATACTGTGGAACTGTATATTATAGAAGCAAATTATGTCT
TCTTTCTGACCCTGATGCTTTTAAAGAAAGTTTTTGATCTCTAACGTAAA
ATGTTGCACTTCTACTTTTCAGACTCGAGCGAAGCTTAACATCGTTTGAA
AAGGTTCATAAAATAGCTAAAAGATGGAAAACCACAGAGAGCCAATTTCG
CAATCAACATCTGTCTTTTTTGCAAGAAAAGTCGAACGAAACAGCATCCA
CACTGTACAGCAGGTGCTCCGAAAGACTAATGTTGCTAACTCTAAAGAAA
CGATATGCAGGTAAGTGTTTTTAGTGACACCTATTAACATTCTATTCAAA
AATCTCGAGTTACCATAGAAAATTACAAATTAGGCGCGTTGATACTTTAA
ACGTTGTAGTGTATGAGGAACTTTCAATTCAAATGATAAAGTGAAGTGTG
ATGTGTCGATTTGGTTGTAATGAAGTGCAATAAAAATCCGTTTTTCTACT
TTTAGATGGTTCAGCTATAGCAACGAGGTTGAGCAAACAAATCAATAAAG
TGTGCAAAGAAATAAAGAATTTATTGGCTTCATACAATTCCATGCGATCA
GAGATTTCGCCTAAATTCAAACCTGTTGATTATAAAGAGGCTCTAGATGT
CAAGTCTTCAATATATAACGAAATAAATCTTGTATCCAACTTGGATGAGG
TAAGTGTAAAAGTGTGTAAAAAAGGTCATAAGTAGAGGAGCAAAAAGAGA
AATCTATTAGTTTGAGCTAAGCCCGGGGGGGCACTTAAGGTAAATGACTT
ACCAGACGTTCGGCCCTTAAGGGTCGGTTTTTCATAGTTCAGTTAGTGCA
CTGTAAGGGTAGGAAATTACAAAACTTCACTGAACTGCACTGTAAGGGTA
GGAAATTGTAATAAAAGGCCAATTTTTTGGTAAAATTGGCAAAAAAATTG
GGCAATTATGGAGTAAAATTGGTCAATTTTGGAGGAAAATTTCCACATTT
TCTTGGAAATTGCAAAAATTTCGCCCTTACGGGCAAGAAACTTTGAAAAA
GTGCACTGTAAGGGTACGATTTTTCATGGAAATTCACTGCACTGTAAGGG
TCCGATTTTGGAAGCCAAATTTTGGGCCGAACGTATGGTCGTTTTCAGAT
CGAGTGCCCCCCCCCCCGGGGAGCTAAGAGATTGGGTGAAACTTTCGAAG
TATTTCGAGGGTCAATCGGTGCAAGTTTAGTGTGTGTAAAGAACCATCCA
TTGATGGTACTAAGTCTTTAAGTTCCAACCGGGTCTTCCTATAAACTTTC
GACCACATTTCGATATTGTCAAATTTTCTTCAAGGACGTTTTATGGATGA
AGTCTACTATCGCAAAAAAGTGTCCTTCATAATGGTTTGGTCTCAAATTT
GAATCCTTACAGTTTCTTCTCTCCTCTTTCATTTTAGGCAAGAAGTTCAC
AAGTCCCTATCAACGTAGTGAAGTCACTCGTACAATTCTACCTCAGAAAA
CAAAGAGCACAAGAAGAAATAATTATCGTCGAGGAAGAAATGAGATCGAC
ATTGCACTTTTGGGAAAATCAATTGACTTTTCTTGATGAATGTGCTTCAC
ACCAAACTTCTGTTGGGATTAGATACCTCTTAAGAGAAAGAATCTTGATT
GTGAAGAACTTCCTTGGGGATTTAAAAAAACTCTTTGAGTTTGCTACCGA
GCCAGTAGAACGAGTAGAAATTAATCACACGAATAATCATATCTCCTTGA
ATGGCTCCGAAAATGAAGAGTACCTATTCAGTGATCAAGATTTTTCGAGC
GATGAAGAAGCCATATCATCTGGTGACAGTGACAGCGACACTGGTGACTC
TGTTTTAAGTGATGACTTGTACATATAAATTATTTTGCCAATGATGTTTG
CTATTTTTTACTGTTGTATATAACTATCGTTACAAAGAAAAGCATTTTTT
ACCTGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039235XLOC_039235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062609-exon-scaffold_37-1575043694:54692..55465TCONS_00062609-exon-scaffold_37-1575043694:54692..55465Clytia hemisphaericaexon
TCONS_00062609-exon-scaffold_37-1575043694:54306..54493TCONS_00062609-exon-scaffold_37-1575043694:54306..54493Clytia hemisphaericaexon
TCONS_00062609-exon-scaffold_37-1575043694:53917..54110TCONS_00062609-exon-scaffold_37-1575043694:53917..54110Clytia hemisphaericaexon
TCONS_00062609-exon-scaffold_37-1575043694:52658..53178TCONS_00062609-exon-scaffold_37-1575043694:52658..53178Clytia hemisphaericaexon
TCONS_00062609-exon-scaffold_37-1510915933:54692..55465TCONS_00062609-exon-scaffold_37-1510915933:54692..55465Clytia hemisphaericaexon
TCONS_00062609-exon-scaffold_37-1510915933:54306..54493TCONS_00062609-exon-scaffold_37-1510915933:54306..54493Clytia hemisphaericaexon
TCONS_00062609-exon-scaffold_37-1510915933:53917..54110TCONS_00062609-exon-scaffold_37-1510915933:53917..54110Clytia hemisphaericaexon
TCONS_00062609-exon-scaffold_37-1510915933:52658..53178TCONS_00062609-exon-scaffold_37-1510915933:52658..53178Clytia hemisphaericaexon
TCONS_00062609-exon-scaffold_37-1491911889:54692..55465TCONS_00062609-exon-scaffold_37-1491911889:54692..55465Clytia hemisphaericaexon
TCONS_00062609-exon-scaffold_37-1491911889:54306..54493TCONS_00062609-exon-scaffold_37-1491911889:54306..54493Clytia hemisphaericaexon
TCONS_00062609-exon-scaffold_37-1491911889:53917..54110TCONS_00062609-exon-scaffold_37-1491911889:53917..54110Clytia hemisphaericaexon
TCONS_00062609-exon-scaffold_37-1491911889:52658..53178TCONS_00062609-exon-scaffold_37-1491911889:52658..53178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:52658..55465 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.33848	2.55802	0.413056	0.722816	1.94781	1.44301	1.8671	1.30387	1.34312	1.41342	1.28227	1.78993	2.86583	1.20928	2.89712	1.1586	1.88928	2.16458	1.00762	1.85361	2.77701	3.13006	0.908095	1.84782	0.366246	0.747654	1.48633	0.792632	0.389151	0.253862
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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