TCONS_00062608 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062608
Unique NameTCONS_00062608
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1288

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062608 ID=TCONS_00062608|Name=TCONS_00062608|organism=Clytia hemisphaerica|type=transcript|length=1288bp
GGGGGGGTAATGTGGTTCTTCGAAAAATTATCaacagataaaaaatgttt
tgggtGTCTCATTAAAAAgagttttcaaagattttgtatGTAATCTTTTT
GTTCCTCTTCAGTTACAGGGACTATTTGACTAAACTATCAAGGAGACTTG
ACATGACGAATTAACAGCTCAAAAAGACAGTGACACAAACAAAGAcaatg
acaaaaacaaaaacaaagacaataacaaaaagcaaaaacaaacacAACAG
ACAATGACGCCTCTCACCTGCAGATTGGAAGCACTCCTATTACCTCAAAC
TTAAAGATTTCTACAAAGAGTCTGCTTTAGTTCTAATGAGCGAAAAAGTA
TGTGACGCTGCAATGCACCAACGTAAAGCTAAAAGACTCGAGCGAAGCTT
AACATCGTTTGAAAAGGTTCATAAAATAGCTAAAAGATGGAAAACCACAG
AGAGCCAATTTCGCAATCAACATCTGTCTTTTTTGCAAGAAAAGTCGAAC
GAAACAGCATCCACACTGTACAGCAGGTGCTCCGAAAGACTAATGTTGCT
AACTCTAAAGAAACGATATGCAGATGGTTCAGCTATAGCAACGAGGTTGA
GCAAACAAATCAATAAAGTGTGcaaagaaataaagaatttaTTGGCTTCA
TACAATTCCATGCGATCAGAGATTTCGCCTAAATTCAAACCTGTTGATTA
TAAAGAGGCTCTAGATGTCAAGTCTTCAATATATAACGAAATAAATCTTG
TATCCAACTTGGATGAGGCAAGAAGTTCACAAGTCCCTATCAACGTAGTG
AAGTCACTCGTACAATTCTACCTCAGAAAACAAAGAGCACAAGAAGAAAT
AATTATCGTCGAGGAAGAAATGAGATCGACATTGCACTTTTGGGAAAATC
AATTGACTTTTCTTGATGAATGTGCTTCACACCAAACTTCTGTTGGGATT
AGATACCTCTTAAGAGAAAGAATCTTGATTGTGAAGAACTTCCTTGGGga
tttaaaaaaactctttGAGTTTGCTACCGAGCCAGTAGAACGAGTAGAAA
TTAATCACACGAATAATCATATCTCCTTGAATGGCTCCGAAAATGAAGAG
TACCTATTCAGTGATCAAGATTTTTCGAGCGATGAAGAAGCCATATCATC
TGGTGACAGTGACAGCGACACTGGTGACTCTGTTTTAAGTGATGACTTGT
ACATATAAATTATTTTGCCAATGATGTTTGCTATTTTTTACTGTTGTATA
TAACTATCGTTAcaaagaaaagcattttttacCTGCGT
Run BLAST on NCBI

transcript from alignment at scaffold_37:52658..55463-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062608 ID=TCONS_00062608|Name=TCONS_00062608|organism=Clytia hemisphaerica|type=transcript|length=2806bp|location=Sequence derived from alignment at scaffold_37:52658..55463- (Clytia hemisphaerica)
GGGGGGGTAATGTGGTTCTTCGAAAAATTATCAACAGATAAAAAATGTTT
TGGGTGTCTCATTAAAAAGAGTTTTCAAAGATTTTGTATGTAATCTTTTT
GTTCCTCTTCAGTTACAGGGACTATTTGACTAAACTATCAAGGAGACTTG
ACATGACGAATTAACAGCTCAAAAAGACAGTGACACAAACAAAGACAATG
ACAAAAACAAAAACAAAGACAATAACAAAAAGCAAAAACAAACACAACAG
ACAATGACGCCTCTGTAATTTAGCTTATGGAATTTTCGTGGAAATTTGAT
TTTTGAGGGTTTGAGTATCGTCCGCGAATTAGGTCTTAAAGGAAATCTGG
GAAGACTGTTTTCCGCGAAGTAGAAAAATAAATCAGCAATGTCAAGTAAC
TATCAAAATCTTTACTAGCATCCAATCCGTAATTTAATGACTAAAATTCG
AAATCCGCGAAAGTCCTTGTGAAAGTTTATCCCATTTAAAAGGTTGACTT
AGTTTTATTAGTTCTGTTAGTTTCTGAAAAAACATGTCGGACCTGGTTAA
TGAAAAAGGATGCACTGCACTGTGTTTCCATCATTCTTACTTAAACGGAA
ACATGAAAACTACTCTTCAATTCTTATTCATTCAATTTCCGTTTTCTTCA
GCACCTGCAGATTGGAAGCACTCCTATTACCTCAAACTTAAAGATTTCTA
CAAAGAGTCTGCTTTAGTTCTAATGAGCGAAAAAGTATGTGACGCTGCAA
TGCACCAACGTAAAGCTAAAAGGTAAATGGTTAAGACAAATCATAATAAA
ATGTATTCTTTCATTTTATTTATCATTGAAAATTTTTTTAATCCTTCAAA
ATCTTTCACATACTGTGGAACTGTATATTATAGAAGCAAATTATGTCTTC
TTTCTGACCCTGATGCTTTTAAAGAAAGTTTTTGATCTCTAACGTAAAAT
GTTGCACTTCTACTTTTCAGACTCGAGCGAAGCTTAACATCGTTTGAAAA
GGTTCATAAAATAGCTAAAAGATGGAAAACCACAGAGAGCCAATTTCGCA
ATCAACATCTGTCTTTTTTGCAAGAAAAGTCGAACGAAACAGCATCCACA
CTGTACAGCAGGTGCTCCGAAAGACTAATGTTGCTAACTCTAAAGAAACG
ATATGCAGGTAAGTGTTTTTAGTGACACCTATTAACATTCTATTCAAAAA
TCTCGAGTTACCATAGAAAATTACAAATTAGGCGCGTTGATACTTTAAAC
GTTGTAGTGTATGAGGAACTTTCAATTCAAATGATAAAGTGAAGTGTGAT
GTGTCGATTTGGTTGTAATGAAGTGCAATAAAAATCCGTTTTTCTACTTT
TAGATGGTTCAGCTATAGCAACGAGGTTGAGCAAACAAATCAATAAAGTG
TGCAAAGAAATAAAGAATTTATTGGCTTCATACAATTCCATGCGATCAGA
GATTTCGCCTAAATTCAAACCTGTTGATTATAAAGAGGCTCTAGATGTCA
AGTCTTCAATATATAACGAAATAAATCTTGTATCCAACTTGGATGAGGTA
AGTGTAAAAGTGTGTAAAAAAGGTCATAAGTAGAGGAGCAAAAAGAGAAA
TCTATTAGTTTGAGCTAAGCCCGGGGGGGCACTTAAGGTAAATGACTTAC
CAGACGTTCGGCCCTTAAGGGTCGGTTTTTCATAGTTCAGTTAGTGCACT
GTAAGGGTAGGAAATTACAAAACTTCACTGAACTGCACTGTAAGGGTAGG
AAATTGTAATAAAAGGCCAATTTTTTGGTAAAATTGGCAAAAAAATTGGG
CAATTATGGAGTAAAATTGGTCAATTTTGGAGGAAAATTTCCACATTTTC
TTGGAAATTGCAAAAATTTCGCCCTTACGGGCAAGAAACTTTGAAAAAGT
GCACTGTAAGGGTACGATTTTTCATGGAAATTCACTGCACTGTAAGGGTC
CGATTTTGGAAGCCAAATTTTGGGCCGAACGTATGGTCGTTTTCAGATCG
AGTGCCCCCCCCCCCGGGGAGCTAAGAGATTGGGTGAAACTTTCGAAGTA
TTTCGAGGGTCAATCGGTGCAAGTTTAGTGTGTGTAAAGAACCATCCATT
GATGGTACTAAGTCTTTAAGTTCCAACCGGGTCTTCCTATAAACTTTCGA
CCACATTTCGATATTGTCAAATTTTCTTCAAGGACGTTTTATGGATGAAG
TCTACTATCGCAAAAAAGTGTCCTTCATAATGGTTTGGTCTCAAATTTGA
ATCCTTACAGTTTCTTCTCTCCTCTTTCATTTTAGGCAAGAAGTTCACAA
GTCCCTATCAACGTAGTGAAGTCACTCGTACAATTCTACCTCAGAAAACA
AAGAGCACAAGAAGAAATAATTATCGTCGAGGAAGAAATGAGATCGACAT
TGCACTTTTGGGAAAATCAATTGACTTTTCTTGATGAATGTGCTTCACAC
CAAACTTCTGTTGGGATTAGATACCTCTTAAGAGAAAGAATCTTGATTGT
GAAGAACTTCCTTGGGGATTTAAAAAAACTCTTTGAGTTTGCTACCGAGC
CAGTAGAACGAGTAGAAATTAATCACACGAATAATCATATCTCCTTGAAT
GGCTCCGAAAATGAAGAGTACCTATTCAGTGATCAAGATTTTTCGAGCGA
TGAAGAAGCCATATCATCTGGTGACAGTGACAGCGACACTGGTGACTCTG
TTTTAAGTGATGACTTGTACATATAAATTATTTTGCCAATGATGTTTGCT
ATTTTTTACTGTTGTATATAACTATCGTTACAAAGAAAAGCATTTTTTAC
CTGCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039235XLOC_039235Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062608-exon-scaffold_37-1575043694:55200..55463TCONS_00062608-exon-scaffold_37-1575043694:55200..55463Clytia hemisphaericaexon
TCONS_00062608-exon-scaffold_37-1575043694:54692..54812TCONS_00062608-exon-scaffold_37-1575043694:54692..54812Clytia hemisphaericaexon
TCONS_00062608-exon-scaffold_37-1575043694:54306..54493TCONS_00062608-exon-scaffold_37-1575043694:54306..54493Clytia hemisphaericaexon
TCONS_00062608-exon-scaffold_37-1575043694:53917..54110TCONS_00062608-exon-scaffold_37-1575043694:53917..54110Clytia hemisphaericaexon
TCONS_00062608-exon-scaffold_37-1575043694:52658..53178TCONS_00062608-exon-scaffold_37-1575043694:52658..53178Clytia hemisphaericaexon
TCONS_00062608-exon-scaffold_37-1510915933:55200..55463TCONS_00062608-exon-scaffold_37-1510915933:55200..55463Clytia hemisphaericaexon
TCONS_00062608-exon-scaffold_37-1510915933:54692..54812TCONS_00062608-exon-scaffold_37-1510915933:54692..54812Clytia hemisphaericaexon
TCONS_00062608-exon-scaffold_37-1510915933:54306..54493TCONS_00062608-exon-scaffold_37-1510915933:54306..54493Clytia hemisphaericaexon
TCONS_00062608-exon-scaffold_37-1510915933:53917..54110TCONS_00062608-exon-scaffold_37-1510915933:53917..54110Clytia hemisphaericaexon
TCONS_00062608-exon-scaffold_37-1510915933:52658..53178TCONS_00062608-exon-scaffold_37-1510915933:52658..53178Clytia hemisphaericaexon
TCONS_00062608-exon-scaffold_37-1491911889:55200..55463TCONS_00062608-exon-scaffold_37-1491911889:55200..55463Clytia hemisphaericaexon
TCONS_00062608-exon-scaffold_37-1491911889:54692..54812TCONS_00062608-exon-scaffold_37-1491911889:54692..54812Clytia hemisphaericaexon
TCONS_00062608-exon-scaffold_37-1491911889:54306..54493TCONS_00062608-exon-scaffold_37-1491911889:54306..54493Clytia hemisphaericaexon
TCONS_00062608-exon-scaffold_37-1491911889:53917..54110TCONS_00062608-exon-scaffold_37-1491911889:53917..54110Clytia hemisphaericaexon
TCONS_00062608-exon-scaffold_37-1491911889:52658..53178TCONS_00062608-exon-scaffold_37-1491911889:52658..53178Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_37supercontigscaffold_37:52658..55463 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.13029	2.06673	0.741032	0	8.87027	6.72396	3.7706	6.14226	5.12725	4.34563	3.99694	3.36775	2.6388	4.6283	2.5793	4.64707	7.55212	8.92044	0.736913	4.26292e-10	5.47285	3.64355	2.8738	3.27841	2.8201	3.36217	2.66669	0.974084	2.49959	1.88554
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062608 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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