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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062606 ID=TCONS_00062606|Name=TCONS_00062606|organism=Clytia hemisphaerica|type=transcript|length=3111bp TTTAGAAAAGCACAACACTAATAAAATATAACAAAGTTTTATATCAAAAT GGAATTATTGGATGTGGAAGATACTGATCTGAAGGAACACAGAGATATTA TTCAAAAACTTTGTCGTATTTGTGGCGAGAAAATAAACCTGAGGAAGGGC TATTTAAACGCAAAATCTGTTAATGATAAGGAGTTGAAAGAAACGATTTT TCGAGCCTACAACATCGACTCCATTTCTGAGAGCTGTAACGTTCATCCCA AAAAGCTTTGCTCAAAATGTGTGCATCGAGTACACACCCTGAAAACAAAG TTCAACAAAGGAAATCTTGACATTATGGAATTCTTCGAATCACACTTCTT CATGCCTCATCATCCCGATTGTGAGTATTGCTCCAAAGTCGAGAAACATT CACTCAAATTAAAAGATTTGGATGCAGTAATGAATAACTTTGGATACGAG AAAGTAATTGCAATCAACACACCAGTTAATGTCCTTAGAAACTTTTGTTT GAATGAATTCATCAACGAATATTTTGTTACAAAAATTAGGTTTGTAttat tcaaagatttttcatggaaatgcTACGTTTATGGTCTGGAAGCATCTATA CATGAAATgccaaataaattttcttcAGACGATGATTTGAAGCTGcttat ttcatttttggaaGTACATGATGTTTGCCATGGTATAGGTCAGTTCCAAG ATGTCATTGCGCACAGCTTGGACCTGAATCCTATTTTCAAAGATGCAACC ATTGAAACCAGCAATATGCATCAGAGAATTTGACAAAAAGAAGACTATGA ATTTGTTCGGCCAAAAACatgtacattttttaaattaaagtcaaaaaaaa catGTGAAGCATGCCAATCTTACACTAAGAAGATTTATGTGATGAGAAGT AGGATTGGTACCAAGTGCAGCAGTACCGAGGCAGATTCTCAAACAAACTA CCGCTGGCTTAGTCATGAGGAAAAGAATGAGAGGATGGCAAATATTCAAG CTGAAAAGAGGAACTTAGCTCGTAAACTAGCACGTTGGTCAACTCGCATA AAGGAACAAATACAAACAAATGGAGTATCCATTAGTGATAAAGAGCATGA CACATTTTTAGATGTGCTAAACAAAAATGATCCCAAGTTTGACTGTGAAA CTCCTCAATGGTTGCTTTGGGAACAGCAGAAACTTGCCGCAAGTAAAAAG GATAGCCGAGGTATGAGATGGCACCCATTAATTTTGAGgtgGTGCATAAG TATTTATTACACGTCACCAGCAGCTTACAAGCAGATATCTAATACGAGCC TGAACTTCATGAAGCTACCTTCAATATCAACTCTGCAGAAATACTCCCAC TTTACCAAACCAATGTCTGGTTTCAACCCTGATGTGATCCAAAGATTAAT TGACGAAACCAATGTAAGCACCCttcacaaaattttgttttatgcatttt ataTCAAGCTAGTTAAAAGTTTCTTTGATCTTGCTGACCCTGTTACGCCA GTCATCATGTTCAGATAACAAGAATTTAAAGCATCCCTGGGATATTTATT TGTCATCATGTTGTGCTGATCTAAAAAATAACTCATTTTTTATTATGTTA TCTTCTCTCAGGTTGACCAGGAAAAGGACCAGCAAGTTGTTCTGCTTTTT GATGAAATGCAAATCAAATCCAATTTGGTCTACCAGAGAAGCACTGGAAA GCTGGTAGGGTTAATAGAACTTGGTGATCTCAACGACGaacttcaacttt ttcaagCATCTGTCGAAAAAGCTGATGCAATTGATCGAGACTTAGCCTCC CATGCTTTGGTGTTCATGGTCCGTGGTATTTTCACATCATTGATCTACCC ACTTGGCTACTTTGCAACCCTAGGTGTAACCTCAGCTCAATTGTATCCAT GCACAATGGAAGCAATCAGAGTGCTCACTGCCATCGATTTCAATGTAAGA GCAGTTGTATCTGATGGAGCAGCTCCCAATAGAAAGTTTTACAAACTTCT CACAGGAGAGAACTTGTATTGGGGAATCAACCCACACACGTTGAGAAAGC TTTATACATTTGCAGACATGCCACATCTCGAAAAGACCACACGAAATTGC GTTGAAAATTCATTGTGGAACCGAAACACCAGACATTTGCATcttGATAC ACAAGATATTGCATGGAAgcattttgttgatgtttatgAAGAGGACCTTG GTATTGTAGCTGGTGCCaatttcaatgtgaaaaagaatgcgTTGGGTGTT TGAATGTTACCAAAATTAAGAGAAGAACACATCAAACTAACGTCACGCTC TAGAAAGACTGTCAAATTAGCTGTTCAAGTTTTGAGCAACAGTATGGTAG TGGCTTTGAAACAACAGAACAGGCATGATACGAAATCGACCATTACCTTC ACTAGCATGTTTGACAGAGTGTTTGATTGTTTAAACGTAACCAGATTACA TCAAAGCTCCAAAGATGACCTTCAACCCTACGAAAAAACAAATGACCCTA GGTTCAAGTTTCTCACGGACGATTTCTTGAAGAACTTTTTGGGAAGATGG GAAACTCAAGTTGCGGCCATGCCAAATAtctccaaaaaagaaaaaagtag aatgtTATTAAGTGTACAAACGAGAAATGGTTGGAAAATGACAGTTTCTG CATTCGTTGAGCTTTCGAAGGAACTTCTAACTATTGAAGGTGTTGATTTC CTACTGTCAGAGAAATTTACACAGGACCCTCTCGAGGAACATTTCGGTCG ACATCGGCGTAGTGGAGGATCAAATGACAATCCTACTATGGCAGAGTTTG GTCCACAGGAACTAACATTAAATGTCGTTAACTCGGAATTGATAAATGAT TTGAAGGGAAATGGAAAAGGTAAAGACGCAGAGAAGCGAAAAATCGACAT CAATGATACCCGTCAACTACCCAAAatgaaaaagcaaaagaaagatCACC AGTGAACTGCGAAAATCTGTTTTACCGATGGACAGCTATAAACACTATGA ACAATGAATATATTCAAGTTTATTTTTAacacatacacgcttttttgtta tattttgtttttcgcAAGTAAATTCTGATTTCCTATTCTTCATAATAATC CTGAATAATCC Run BLAST on NCBI protein sequence of TCONS_00062606-protein >TCONS_00062606-protein ID=TCONS_00062606-protein|Name=TCONS_00062606-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MELLDVEDTDLKEHRDIIQKLCRICGEKINLRKGYLNAKSVNDKELKETI FRAYNIDSISESCNVHPKKLCSKCVHRVHTLKTKFNKGNLDIMEFFESHF FMPHHPDCEYCSKVEKHSLKLKDLDAVMNNFGYEKVIAINTPVNVLRNFC LNEFINEYFVTKIRFVLFKDFSWKCYVYGLEASIHEMPNKFSSDDDLKLL ISFLEVHDVCHGIGQFQDVIAHSLDLNPIFKDATIETSNMHQRI Run BLAST on NCBI transcript from alignment at scaffold_37:13358..18286+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062606 ID=TCONS_00062606|Name=TCONS_00062606|organism=Clytia hemisphaerica|type=transcript|length=4929bp|location=Sequence derived from alignment at scaffold_37:13358..18286+ (Clytia hemisphaerica) TTTAGAAAAGCACAACACTAATAAAATATAACAAAGTTTTATATCAAAAT
GGAATTATTGGATGTGGAAGATACTGATCTGAAGGAACACAGAGATATTA
TTCAAAAACTTTGTCGTATTTGTGGCGAGAAAATAAACCTGAGGAAGGGC
TATTTAAACGCAAAATCTGTTAATGATAAGGAGTTGAAAGAAACGATTTT
TCGAGCCTACAACATCGACTCCATTTCTGAGAGCTGTAACGTTCATCCCA
AAAAGCTTTGCTCAAAATGTGTGCATCGAGTACACACCCTGAAAACAAAG
TTCAACAAAGGAAATCTTGACATTATGGAATTCTTCGAATCACACTTCTT
CATGCCTCATCATCCCGATTGTGAGTATTGCTCCAAAGTCGAGAAACATT
CACTCAAATTAAAAGATTTGGATGCAGTAATGAATAACTTTGGATACGAG
AAAGTAATTGCAATCAACACACCAGTTAATGTCCTTAGAAACTTTTGTTT
GAATGAATTCATCAACGAATATTTTGTTACAAAAATTAGGTTTGTAttat
tcaaagatttttcatggaaatgcTACGTTTATGGTCTGGAAGCATCTATA
CATGAAATgccaaataaattttcttcAGACGATGATTTGAAGCTGcttat
ttcatttttggaaGTACATGATGTTTGCCATGGTATAGGTCAGTTCCAAG
ATGTCATTGCGCACAGCTTGGACCTGAATCCTATTTTCAAAGATGCAACC
ATTGAAACCAGCAATATGCATCAGAGAATTTGACAAAAAGAAGACTATGA
ATTTGTTCGGCCAAAAACatgtacattttttaaattaaagtcaaaaaaaa
catGTGAAGCATGCCAATCTTACACTAAGAAGATTTATGTGATGAGAAGT
AGGATTGGTACCAAGTGCAGCAGTACCGAGGCAGATTCTCAAACAAACTA
CCGCTGGCTTAGTCATGAGGAAAAGAATGAGAGGATGGCAAATATTCAAG
CTGAAAAGAGGAACTTAGCTCGTAAACTAGCACGTTGGTCAACTCGCATA
AAGGAACAAATACAAACAAATGGAGTATCCATTAGTGATAAAGAGCATGA
CACATTTTTAGATGTGCTAAACAAAAATGATCCCAAGTTTGACTGTGAAA
CTCCTCAATGGTTGCTTTGGGAACAGCAGAAACTTGCCGCAAGTAAAAAG
GATAGCCGAGGTATGAGATGGCACCCATTAATTTTGAGGTAAGTACATGA
ttataattgatttttttgattgattcTCAAAATCTACAATGTCCTTGTAC
ACTTAAAGATCATGTTTGAATTTGTCAACCTTGGAGAAAATTCGGAATTT
CATACTCTGAACTCATACTACTATTTATTGCTGAATAATATTCTTTGTCT
AGTGATGATAAGGTATANTTCTCATACTAACTCATACTACTATTTATTGC
TGAATAATATTCTTTGTCTAGTGATGATAAGGTATATGGAGTTTTTATAA
TCCGTTGATTAAACAGTGGGAATAGTAGCTCTTTTTAGCATTTCATAAGT
TCATTTTTCCTTTGGCCTCTTGTGTACCAAAACTAAAAATCTCAAAGTTT
TTGCTGTACTCCCCAAAAGCTTTCATCTATCAATTggctattttttttca
ttttaggtgGTGCATAAGTATTTATTACACGTCACCAGCAGCTTACAAGC
AGATATCTAATACGAGCCTGAACTTCATGAAGCTACCTTCAATATCAACT
CTGCAGAAATACTCCCACTTTACCAAACCAATGTCTGGTTTCAACCCTGA
TGTGATCCAAAGATTAATTGACGAAACCAATGTAAGCACCCttcacaaaa
ttttgttttatgcattttataTCAAGCTAGTTAAAAGTTTCTTTGATCTT
GCTGACCCTGTTACGCCAGTCATCATGTTCAGATAACAAGAATTTAAAGC
ATCCCTGGGATATTTATTTGTCATCATGTTGTGCTGATCTAAAAAATAAC
TCATTTTTTATTATGTTATCTTCTCTCAGGTTGACCAGGAAAAGGACCAG
CAAGTTGTTCTGCTTTTTGATGAAATGCAAATCAAATCCAATTTGGTCTA
CCAGAGAAGCACTGGAAAGCTGGTAGGGTTAATAGAACTTGGTGATCTCA
ACGACGaacttcaactttttcaagCATCTGTCGAAAAAGCTGATGCAATT
GATCGAGACTTAGCCTCCCATGCTTTGGTGTTCATGGTCCGTGGTATTTT
CACATCATTGATCTACCCACTTGGCTACTTTGCAACCCTAGGTGTAACCT
CAGCTCAATTGTATCCATGCACAATGGAAGCAATCAGAGTGCTCACTGCC
ATCGATTTCAATGTAAGAGCAGTTGTATCTGATGGAGCAGCTCCCAATAG
AAAGTTTTACAAACTTCTCACAGGAGAGAACTTGTATTGGGGAATCAACC
CACACACGTTGAGAAAGCTTTATACATTTGCAGACATGCCACATCTCGAA
AAGACCACACGAAATTGCGTTGAAAATTCATTGTGGAACCGAAACACCAG
ACATTTGCATGTAAGTTTCATCTTTTGCATTCATTTGCCAATGAATTAAC
CCAAGGCTAAATTCCCATGTGTTAATTATCCCAAGGCTAAATTCCCATGT
GTTTATTATCCCAAGGCTAAATTCCCATGGGTTTACAAGTCTACTACTTA
TAAACTATTGAGCAGGATGTTTAaagatattttgcaaaaaaatatttttc
agactTCAGTTCATTCAgaggaaaaattttaaatgtctAGAACACCAACC
TTTCCTTTcacagattttcaaaaaaattattaatcattacttttaaattt
tttaaaaatcaatttttagcttGATACACAAGATATTGCATGGAAgcatt
ttgttgatgtttatgAAGAGGACCTTGGTATTGTAGCTGGTGCCaatttc
aatgtgaaaaagaatgcgTTGGGTGTTTGAATGTTACCAAAATTAAGAGA
AGAACACATCAAACTAACGTCACGCTCTAGAAAGACTGTCAAATTAGCTG
TTCAAGTAAGTGTTTATAATATTGCTCTGACACCTCTTTAAATCACATTG
TCTTTTGAAAATGCAAAGTCTGGGAAAATCCACAACTACCAAATAGTATC
CTAAAATACCAAAggcaaatttattattttttgactgatttttttgtCGA
AGTTCTAATGCTTGAGATTCAATCTTATTTAAGTACATACAGTAGTtaca
aaaatttctaaaatattactCTTGAACTGTTATTAGGTTTTGAGCAACAG
TATGGTAGTGGCTTTGAAACAACAGAACAGGCATGATACGAAATCGACCA
TTACCTTCACTAGCATGTTTGACAGAGTGTTTGATTGTTTAAACGTAACC
AGATTACATCAAAGCTCCAAAGATGACCTTCAACCCTACGAAAAAACAAA
TGACCCTAGGTTCAAGGTACTTAATAATACCACCATCCTGCAAAATTTAG
AAGCACTTCTGCTACTGGGCTCTTTCAAAATAAGGAAATAAATGTCTTTG
tatgtttttaagttttatgGTAATCTTATACAGTGTATTATCGCATTTAA
CATACTTCCAACTTTATTTTAGTTTCTCACGGACGATTTCTTGAAGAACT
TTTTGGGAAGATGGGAAACTCAAGTTGCGGCCATGCCAAATAtctccaaa
aaagaaaaaagtagaatgtTATTAAGTGTACAAACGAGAAATGGTTGGAA
AATGACAGGTAAATATACAATTACAATATATTTTGTTCTTGTTcttgcat
tttttaatttctttgatattcTGGTCTCGTATTACAGGGGCGACTAAACC
TAAATGACACATGATAATGTGAGAGCTCGATTACACCAACGACTTACAAA
TAAATTTATTAAGTCGTAGATTATACAATTAAGTTAGAATCATTTGTAAT
TATCTTCTGACGAGAGCACTGATCTAGCACGTCCAAATCATCTGGTCGAA
CATAATGACTTTCTACAACATGAAATATTTCCACAACTGGAAACTCCAAA
CTACTCTCACTTACAGAACCAGGGTTTAGTAAATTTACATACAGAGTTGA
ACcatttcattatattttttccttctttttatcACCTTAGTTTCTGCATT
CGTTGAGCTTTCGAAGGAACTTCTAACTATTGAAGGTGTTGATTTCCTAC
TGTCAGAGAAATTTACACAGGTAAGCATAGatttacttttttgtttcatt
aaTAGTTTGTTTTGGTATAGCTCCGCCGGAAAATCTTAATTCGTACATTT
TTGAATTGCAGCATATTCCTCAGGTCTTTTCGTGACCGTGGTGGAAAATG
CTCTCAATGGAAATTTTGTCCAGGGGGGATAGTTCATGTCATGTCTCTTG
GTTTATGAAGTAAGATACTTTGTCCCAGGGCCAAACTGTTGTCCAGTCAA
TCAGGCAATGTCTGGGGTACATTGTTCGTGCTTCTCACGTGGGTTAAGTT
TCGAAAATaatctttatttttaaattttatgtttacTTCCAGGACCCTCT
CGAGGAACATTTCGGTCGACATCGGCGTAGTGGAGGATCAAATGACAATC
CTACTATGGCAGAGTTTGGTCCACAGGAACTAACATTAAATGTCGTTAAC
TCGGAATTGATAAATGATTTGAAGGGAAATGGAAAAGGTAAAGACGCAGA
GAAGCGAAAAATCGACATCAATGATACCCGTCAACTACCCAAAatgaaaa
agcaaaagaaagatCACCAGTGAACTGCGAAAATCTGTTTTACCGATGGA
CAGCTATAAACACTATGAACAATGAATATATTCAAGTTTATTTTTAacac
atacacgcttttttgttatattttgtttttcgcAAGTAAATTCTGATTTC
CTATTCTTCATAATAATCCTGAATAATCC Coding sequence (CDS) from alignment at scaffold_37:13358..18286+ >TCONS_00062606 ID=TCONS_00062606|Name=TCONS_00062606|organism=Clytia hemisphaerica|type=CDS|length=735bp|location=Sequence derived from alignment at scaffold_37:13358..18286+ (Clytia hemisphaerica) ATGGAATTATTGGATGTGGAAGATACTGATCTGAAGGAACACAGAGATAT TATTCAAAAACTTTGTCGTATTTGTGGCGAGAAAATAAACCTGAGGAAGG GCTATTTAAACGCAAAATCTGTTAATGATAAGGAGTTGAAAGAAACGATT TTTCGAGCCTACAACATCGACTCCATTTCTGAGAGCTGTAACGTTCATCC CAAAAAGCTTTGCTCAAAATGTGTGCATCGAGTACACACCCTGAAAACAA AGTTCAACAAAGGAAATCTTGACATTATGGAATTCTTCGAATCACACTTC TTCATGCCTCATCATCCCGATTGTGAGTATTGCTCCAAAGTCGAGAAACA TTCACTCAAATTAAAAGATTTGGATGCAGTAATGAATAACTTTGGATACG AGAAAGTAATTGCAATCAACACACCAGTTAATGTCCTTAGAAACTTTTGT TTGAATGAATTCATCAACGAATATTTTGTTACAAAAATTAGGTTTGTAtt attcaaagatttttcatggaaatgcTACGTTTATGGTCTGGAAGCATCTA TACATGAAATgccaaataaattttcttcAGACGATGATTTGAAGCTGctt atttcatttttggaaGTACATGATGTTTGCCATGGTATAGGTCAGTTCCA AGATGTCATTGCGCACAGCTTGGACCTGAATCCTATTTTCAAAGATGCAA CCATTGAAACCAGCAATATGCATCAGAGAATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062606-exon-scaffold_37-1491911889:13358..14595 | TCONS_00062606-exon-scaffold_37-1491911889:13358..14595 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1510915933:13358..14595 | TCONS_00062606-exon-scaffold_37-1510915933:13358..14595 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1575043694:13358..14595 | TCONS_00062606-exon-scaffold_37-1575043694:13358..14595 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1491911889:15014..15917 | TCONS_00062606-exon-scaffold_37-1491911889:15014..15917 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1510915933:15014..15917 | TCONS_00062606-exon-scaffold_37-1510915933:15014..15917 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1575043694:15014..15917 | TCONS_00062606-exon-scaffold_37-1575043694:15014..15917 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1491911889:16227..16412 | TCONS_00062606-exon-scaffold_37-1491911889:16227..16412 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1510915933:16227..16412 | TCONS_00062606-exon-scaffold_37-1510915933:16227..16412 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1575043694:16227..16412 | TCONS_00062606-exon-scaffold_37-1575043694:16227..16412 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1491911889:16644..16823 | TCONS_00062606-exon-scaffold_37-1491911889:16644..16823 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1510915933:16644..16823 | TCONS_00062606-exon-scaffold_37-1510915933:16644..16823 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1575043694:16644..16823 | TCONS_00062606-exon-scaffold_37-1575043694:16644..16823 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1491911889:16980..17115 | TCONS_00062606-exon-scaffold_37-1491911889:16980..17115 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1510915933:16980..17115 | TCONS_00062606-exon-scaffold_37-1510915933:16980..17115 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1575043694:16980..17115 | TCONS_00062606-exon-scaffold_37-1575043694:16980..17115 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1491911889:17498..17577 | TCONS_00062606-exon-scaffold_37-1491911889:17498..17577 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1510915933:17498..17577 | TCONS_00062606-exon-scaffold_37-1510915933:17498..17577 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1575043694:17498..17577 | TCONS_00062606-exon-scaffold_37-1575043694:17498..17577 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1491911889:17900..18286 | TCONS_00062606-exon-scaffold_37-1491911889:17900..18286 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1510915933:17900..18286 | TCONS_00062606-exon-scaffold_37-1510915933:17900..18286 | Clytia hemisphaerica | exon |
TCONS_00062606-exon-scaffold_37-1575043694:17900..18286 | TCONS_00062606-exon-scaffold_37-1575043694:17900..18286 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_37 | supercontig | scaffold_37:13358..18286 + |
Blast
The following BLAST results are available for this feature:
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