TCONS_00062603 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062603
Unique NameTCONS_00062603
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length691

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062603 ID=TCONS_00062603|Name=TCONS_00062603|organism=Clytia hemisphaerica|type=transcript|length=691bp
AATGTTACCGTATCCAACGTCGCCAAGATAAAACCAATTCTAATCCGCCG
ACCAAGCCAGACGCATCAAATACTGCCGGTGTTGGTACCATGTTTAGTCA
AGTATCAGGAATCACCACTGCGGGATCAGATTCCACTTCTGTTATCGACC
AAAATGCAATTGCTTCACCTCACAGTATATTTACCAAGGGCCAGTGGCGG
AAATCGAAGTTCAAAAATCACCCTAGGGTAGAACTCTTATCATCTGTTAT
GTCATCTGATTAACAGTTCAGTAAAAGACACCCTAACGTTGCTCCTACCA
AAATCACAGCACTGGCCGATACCGGTGCTCAGTCTTGTCTTTGGTCGCTG
AAGGAATTCGAGTCACTTGGcttcacaaaaaatgatttgattccCGTTAA
CATCAACCTCATGGCTTCAAACAAGTCACCCATAACCGTTGAAGGAGCTG
CTTGCGTTCGATTAGAGGCTGTCACATCAGACGGCTCCACGCAGTCCTGC
TCCACTATGGTTTATATCAGTCGGCAGGCACAGGGATTCTACCTTTCGCT
GGAGAATATGATGGAACTGGGTATAGTCCCAAGAGACTTTCCTTCCATTA
AACCGTTGTCATCGATCGATCAAGTTGGTCACACTACGAGCACCGTTGAT
ATCGATTCCATCAAGGAAAAGAGTTTCTCCTGTCGTACTCG
Run BLAST on NCBI

transcript from alignment at scaffold_369:465063..465753

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062603 ID=TCONS_00062603|Name=TCONS_00062603|organism=Clytia hemisphaerica|type=transcript|length=691bp|location=Sequence derived from alignment at scaffold_369:465063..465753 (Clytia hemisphaerica)
CGAGTACGACAGGAGAAACTCTTTTCCTTGATGGAATCGATATCAACGGT
GCTCGTAGTGTGACCAACTTGATCGATCGATGACAACGGTTTAATGGAAG
GAAAGTCTCTTGGGACTATACCCAGTTCCATCATATTCTCCAGCGAAAGG
TAGAATCCCTGTGCCTGCCGACTGATATAAACCATAGTGGAGCAGGACTG
CGTGGAGCCGTCTGATGTGACAGCCTCTAATCGAACGCAAGCAGCTCCTT
CAACGGTTATGGGTGACTTGTTTGAAGCCATGAGGTTGATGTTAACGgga
atcaaatcattttttgtgaagCCAAGTGACTCGAATTCCTTCAGCGACCA
AAGACAAGACTGAGCACCGGTATCGGCCAGTGCTGTGATTTTGGTAGGAG
CAACGTTAGGGTGTCTTTTACTGAACTGTTAATCAGATGACATAACAGAT
GATAAGAGTTCTACCCTAGGGTGATTTTTGAACTTCGATTTCCGCCACTG
GCCCTTGGTAAATATACTGTGAGGTGAAGCAATTGCATTTTGGTCGATAA
CAGAAGTGGAATCTGATCCCGCAGTGGTGATTCCTGATACTTGACTAAAC
ATGGTACCAACACCGGCAGTATTTGATGCGTCTGGCTTGGTCGGCGGATT
AGAATTGGTTTTATCTTGGCGACGTTGGATACGGTAACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039232XLOC_039232Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062603-exon-scaffold_369-1491911889:465063..465753TCONS_00062603-exon-scaffold_369-1491911889:465063..465753Clytia hemisphaericaexon
TCONS_00062603-exon-scaffold_369-1510915933:465063..465753TCONS_00062603-exon-scaffold_369-1510915933:465063..465753Clytia hemisphaericaexon
TCONS_00062603-exon-scaffold_369-1575043694:465063..465753TCONS_00062603-exon-scaffold_369-1575043694:465063..465753Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:465063..465753 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.147211	0.21533	0	0	0.975599	0.48841	0.393763	0.672703	0.835019	1.39558	1.01804	0.238605	1.5659	0.332446	0.0922398	0.27198	0.115952	0.194861	0.0822369	0.386049	0.163544	0.312409	0.37041	0.600525	0.205488	0.424066	0	0.323137	0.163392	0.110328
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062603 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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