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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062577 ID=TCONS_00062577|Name=TCONS_00062577|organism=Clytia hemisphaerica|type=transcript|length=787bp
AGAAGAGATCGCTCTTGAGATGGAGAAGAGGAGAAGAGCCACGAACATCA
TCGTTCAcggaataaaagaagaagaacagGTATGCGATAATAGTGACAAA
AATAATCATACTAGGGACTGCGAATGGGCTGATCAATTAATTAAGGATTT
GCATGTTTCTTCTAAgatcaaaaaaatgtttagaataGGTAAGAAACCAA
ATCGTCCACTGTTAATTTGCCTCGATAGTGAAGATGATAAACTTAAGATC
ATGGGAAATCTCCCATCACTTAAAGGTAACGATACCTATAAAGGCATAAG
TATCACAGAAGACCTATGTAGGTCCCAACGTGAAAAGTATAAAGAGCTAT
CACAACAGGCGAAAGACCTAAATGATGACCTAGAAACCGATGAATTTATT
TATCGGGTTCGAGGATCGTCTAAAAACGGCTTCGAAATAAAGAAGGTGta
caacaaaacacaaaaacgaAACAACAacccaatcaatcaataaaaccGAT
TGATACCGATAACGACAGCTTGAATGAAAACCCACCTAaccaaaacaatt
caaaaaacaCAACCACAACAATTAGTAAACTTACTATCATCTACACAAAT
GCAGACCAAATGACAtctaagaagaaaaatgaacttttgaaGCACGTCGC
TACCGAATAACCTCATATAATTGCGATCACCGAAGTCAACACCAAACGGA
TCTCTGAGAGTAAAGATCAAGACTACTCAATTGAGAATTATTCTACACCA
TATAAAACTAACATATGAATACAAAAAAAGAGAGGAA Run BLAST on NCBI protein sequence of TCONS_00062577-protein >TCONS_00062577-protein ID=TCONS_00062577-protein|Name=TCONS_00062577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
EEIALEMEKRRRATNIIVHGIKEEEQVCDNSDKNNHTRDCEWADQLIKDL
HVSSKIKKMFRIGKKPNRPLLICLDSEDDKLKIMGNLPSLKGNDTYKGIS
ITEDLCRSQREKYKELSQQAKDLNDDLETDEFIYRVRGSSKNGFEIKKVY
NKTQKRNNNPINQ Run BLAST on NCBI transcript from alignment at scaffold_369:437807..438674- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062577 ID=TCONS_00062577|Name=TCONS_00062577|organism=Clytia hemisphaerica|type=transcript|length=868bp|location=Sequence derived from alignment at scaffold_369:437807..438674- (Clytia hemisphaerica)
AGAAGAGATCGCTCTTGAGATGGAGAAGAGGAGAAGAGCCACGAACATCA
TCGTTCACGGAATAAAAGAAGAAGAACAGGTATGCGATAATAGTGACAAA
AATAATCATACTAGGGACTGCGAATGGGCTGATCAATTAATTAAGGATTT
GCATGTTTCTTCTAAGATCAAAAAAATGTTTAGAATAGGTAAGAAACCAA
ATCGTCCTCGATAGTGAAGATGATAAACTTAAGATCATGGGAAATCTCCC
ATCACTTANTTTAGAATAGGTAAGAAACCAAATCGTCCACTGTTAATTTG
CCTCGATAGTGAAGATGATAAACTTAAGATCATGGGAAATCTCCCATCAC
TTAAAGGTAACGATACCTATAAAGGCATAAGTATCACAGAAGACCTATGT
AGGTCCCAACGTGAAAAGTATAAAGAGCTATCACAACAGGCGAAAGACCT
AAATGATGACCTAGAAACCGATGAATTTATTTATCGGGTTCGAGGATCGT
CTAAAAACGGCTTCGAAATAAAGAAGGTGTACAACAAAACACAAAAACGA
AACAACAACCCAATCAATCAATAAAACCGATTGATACCGATAACGACAGC
TTGAATGAAAACCCACCTAACCAAAACAATTCAAAAAACACAACCACAAC
AATTAGTAAACTTACTATCATCTACACAAATGCAGACCAAATGACATCTA
AGAAGAAAAATGAACTTTTGAAGCACGTCGCTACCGAATAACCTCATATA
ATTGCGATCACCGAAGTCAACACCAAACGGATCTCTGAGAGTAAAGATCA
AGACTACTCAATTGAGAATTATTCTACACCATATAAAACTAACATATGAA
TACAAAAAAAGAGAGGAA Coding sequence (CDS) from alignment at scaffold_369:437807..438674- >TCONS_00062577 ID=TCONS_00062577|Name=TCONS_00062577|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_369:437807..438674- (Clytia hemisphaerica)
GTAAGAAACCAAATCGTCCACTGTTAATTTGCCTCGATAGTGAAGATGAT
AAACTTAAGATCATGGGAAATCTCCCATCACTTAAAGGTAACGATACCTA
TAAAGGCATAAGTATCACAGAAGACCTATGTAGGTCCCAACGTGAAAAGT
ATAAAGAGCTATCACAACAGGCGAAAGACCTAAATGATGACCTAGAAACC
GATGAATTTATTTATCGGGTTCGAGGATCGTCTAAAAACGGCTTCGAAAT
AAAGAAGGTGTACAACAAAACACAAAAACGAAACAACAACCCAATCAATC
AATAAGAAGAGATCGCTCTTGAGATGGAGAAGAGGAGAAGAGCCACGAAC
ATCATCGTTCACGGAATAAAAGAAGAAGAACAGGTATGCGATAATAGTGA
CAAAAATAATCATACTAGGGACTGCGAATGGGCTGATCAATTAATTAAGG
ATTTGCATGTTTCTTCTAAGATCAAAAAAATGTTTAGAATAGGTAAGAAA
CCAAATCGTCCACTGTTAATTTGCCTCGATAGTGAAGATGATAAACTTAA
GATCATGGGAAATCTCCCATCACTTAAAGGTAACGATACCTATAAAGGCA
TAAGTATCACAGAAGACCTATGTAGGTCCCAACGTGAAAAGTATAAAGAG
CTATCACAACAGGCGAAAGACCTAAATGATGACCTAGAAACCGATGAATT
TATTTATCGGGTTCGAGGATCGTCTAAAAACGGCTTCGAAATAAAGAAGG
TGTACAACAAAACACAAAAACGAAACAACAACCCAATCAATCAATAAGAA
GAGATCGCTCTTGAGATGGAGAAGAGGAGAAGAGCCACGAACATCATCGT
TCACGGAATAAAAGAAGAAGAACAGGTATGCGATAATAGTGACAAAAATA
ATCATACTAGGGACTGCGAATGGGCTGATCAATTAATTAAGGATTTGCAT
GTTTCTTCTAAGATCAAAAAAATGTTTAGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062577-exon-scaffold_369-1575043694:438487..438674 | TCONS_00062577-exon-scaffold_369-1575043694:438487..438674 | Clytia hemisphaerica | exon |
| TCONS_00062577-exon-scaffold_369-1575043694:437807..438405 | TCONS_00062577-exon-scaffold_369-1575043694:437807..438405 | Clytia hemisphaerica | exon |
| TCONS_00062577-exon-scaffold_369-1510915933:438487..438674 | TCONS_00062577-exon-scaffold_369-1510915933:438487..438674 | Clytia hemisphaerica | exon |
| TCONS_00062577-exon-scaffold_369-1510915933:437807..438405 | TCONS_00062577-exon-scaffold_369-1510915933:437807..438405 | Clytia hemisphaerica | exon |
| TCONS_00062577-exon-scaffold_369-1491911889:438487..438674 | TCONS_00062577-exon-scaffold_369-1491911889:438487..438674 | Clytia hemisphaerica | exon |
| TCONS_00062577-exon-scaffold_369-1491911889:437807..438405 | TCONS_00062577-exon-scaffold_369-1491911889:437807..438405 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_369 | supercontig | scaffold_369:437807..438674 - |
Blast
The following BLAST results are available for this feature:
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