TCONS_00062576 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062576
Unique NameTCONS_00062576
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1000

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062576 ID=TCONS_00062576|Name=TCONS_00062576|organism=Clytia hemisphaerica|type=transcript|length=1000bp
AAGCTTGATTTACTAATCCGAGGGGTTTCCCCGAAAAAGAAGACCTTGAA
GCGCAATTCGAGCAAAATCGAATGCGCCGGGGTTTTCCCTCGTTTCCAAA
ACAAAAACAAAAACAAAACAAAAAAAAATTCTAAAATCACCAAAACTCAA
ATAAAAATGGAGAATGTAAATGAGAAGAAACCAAAGTTCACAAGAAAACC
GAACTTTTCAGCAGATGAAACACGATTCCTACTAGACTCATACGAAGAAT
TCAAAGATATCCTTGAAGGAAAATTTTCAAATGCTCTTACACAACAAAAC
AAGAACGAATCATGGCAAAAAATAGCCAGCAACGTTAATGCTGTTGGGGT
AACGCCTCGTACGATTGCTAGTATACAAAACAAATTTAAAAACATTAAAT
CTGAAGCAAAACTGGCCTATAATAAATTCAAGAAACATCAAAATGGCACT
GGTGGTGGTCCTCCACCAAAAGAACCGTCTTCATCAGACCAGAGAATAAT
GAGTTTATTCGAAGGGCGTCCCTCTTTTGAGGGCCTTCATGGTTTTGCAA
CAAACGCACATGAAACTGaaatcgGATCTTTTTCAACGTCAATGATGAGT
GAGGTATCAGCAGACCCAATGCTTTCATCGACCGCTATTATGGGTCCTCA
AGATGAAACCAACGAAACAATTCAAAAAACTAcgaaaggaaaacaaaaag
cCACAGCACCCAAGCAAGGGAAGTCATTAATCAAACGCTCGACGCTAGCT
GCGAataagaaaattcagaaaaaatgtCTTCTTCAAGAACTTGCAATACA
AAAGGCTCGTCTGAAAGGCGAACGCCTCAGAAACAAAAACCTTCTTTTGA
AAGAGAGAAACCTNCTCGTCTGAAAGGCGAACGCCTCAGAAACAAAAACC
TTCTTTTGAAAGAGAGAAACCTTCGACGAGAGGACGAAATTCTAACcctc
caaaaagaaaaattgcagcTTGAAATCAGTTTGATGAAAGGAAACATTTT
Run BLAST on NCBI

protein sequence of TCONS_00062576-protein

>TCONS_00062576-protein ID=TCONS_00062576-protein|Name=TCONS_00062576-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
KLDLLIRGVSPKKKTLKRNSSKIECAGVFPRFQNKNKNKTKKNSKITKTQ
IKMENVNEKKPKFTRKPNFSADETRFLLDSYEEFKDILEGKFSNALTQQN
KNESWQKIASNVNAVGVTPRTIASIQNKFKNIKSEAKLAYNKFKKHQNGT
GGGPPPKEPSSSDQRIMSLFEGRPSFEGLHGFATNAHETEIGSFSTSMMS
EVSADPMLSSTAIMGPQDETNETIQKTTKGKQKATAPKQGKSLIKRSTLA
ANKKIQKKCLLQELAIQKARLKGERLRNKNLLLKERNXLV
Run BLAST on NCBI

transcript from alignment at scaffold_369:364662..365830-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062576 ID=TCONS_00062576|Name=TCONS_00062576|organism=Clytia hemisphaerica|type=transcript|length=1169bp|location=Sequence derived from alignment at scaffold_369:364662..365830- (Clytia hemisphaerica)
AAGCTTGATTTACTAATCCGAGGGGTTTCCCCGAAAAAGAAGACCTTGAA
GCGCAATTCGAGCAAAATCGAATGCGCCGGGGTTTTCCCTCGTTTCCAAA
ACAAAAACAAAAACAAAACAAAAAAAAATTCTAAAATCACCAAAACTCAA
ATAAAAATGGAGAATGTAAATGAGAAGAAACCAAAGTTCACAAGAAAACC
GAACTTTTCAGCAGATGAAACACGATTCCTACTAGACTCATACGAAGAAT
TCAAAGATATCCTTGAAGGAAAATTTTCAAATGCTCTTACACAACAAAAC
AAGAACGAATCATGGCAAAAAATAGCCAGCAACGTTAATGCTGTTGGGGT
AACGCCTCGTACGATTGCTAGTATACAAAACAAATTTAAAAACATTAAAT
CTGAAGCAAAACTGGCCTATAATAAATTCAAGAAACATCAAAATGGCACT
GGTGGTGGTCCTCCACCAAAAGAACCGTCTTCATCAGACCAGAGAATAAT
GAGTTTATTCGAAGGGCGTCCCTCTTTTGAGGGCCTTCATGGTTTTGCAA
CAAACGCACATGAAACTGGTAAGTTTCCTTGTTTGTTTTTTCAATACACT
TGCTGATGATCTTTCTGGTGTGATACTTATTATCCTTGATGTCCTCTACT
CCCTCCCACCGGAAAACAAGAGACTAATGAAGCAATCAGCTAATTATAAT
TCTAAGATAATAATTTCCTAATTATTTATTTTTACAGAAATCGGATCTTT
TTCAACGTCAATGATGAGTGAGGTATCAGCAGACCCAATGCTTTCATCGA
CCGCTATTATGGGTCCTCAAGATGAAACCAACGAAACAATTCAAAAAACT
ACGAAAGGAAAACAAAAAGCCACAGCACCCAAGCAAGGGAAGTCATTAAT
CAAACGCTCGACGCTAGCTGCGAATAAGAAAATTCAGAAAAAATGTCTTC
TTCAAGAACTTGCAATACAAAAGGCTCGTCTGAAAGGCGAACGCCTCAGA
AACAAAAACCTTCTTTTGAAAGAGAGAAACCTNCTCGTCTGAAAGGCGAA
CGCCTCAGAAACAAAAACCTTCTTTTGAAAGAGAGAAACCTTCGACGAGA
GGACGAAATTCTAACCCTCCAAAAAGAAAAATTGCAGCTTGAAATCAGTT
TGATGAAAGGAAACATTTT

Coding sequence (CDS) from alignment at scaffold_369:364662..365830-

>TCONS_00062576 ID=TCONS_00062576|Name=TCONS_00062576|organism=Clytia hemisphaerica|type=CDS|length=1746bp|location=Sequence derived from alignment at scaffold_369:364662..365830- (Clytia hemisphaerica)
AAATCGGATCTTTTTCAACGTCAATGATGAGTGAGGTATCAGCAGACCCA
ATGCTTTCATCGACCGCTATTATGGGTCCTCAAGATGAAACCAACGAAAC
AATTCAAAAAACTACGAAAGGAAAACAAAAAGCCACAGCACCCAAGCAAG
GGAAGTCATTAATCAAACGCTCGACGCTAGCTGCGAATAAGAAAATTCAG
AAAAAATGTCTTCTTCAAGAACTTGCAATACAAAAGGCTCGTCTGAAAGG
CGAACGCCTCAGAAACAAAAACCTTCTTTTGAAAGAGAGAAACCTNCTCG
TCTGAAAGCTTGATTTACTAATCCGAGGGGTTTCCCCGAAAAAGAAGACC
TTGAAGCGCAATTCGAGCAAAATCGAATGCGCCGGGGTTTTCCCTCGTTT
CCAAAACAAAAACAAAAACAAAACAAAAAAAAATTCTAAAATCACCAAAA
CTCAAATAAAAATGGAGAATGTAAATGAGAAGAAACCAAAGTTCACAAGA
AAACCGAACTTTTCAGCAGATGAAACACGATTCCTACTAGACTCATACGA
AGAATTCAAAGATATCCTTGAAGGAAAATTTTCAAATGCTCTTACACAAC
AAAACAAGAACGAATCATGGCAAAAAATAGCCAGCAACGTTAATGCTGTT
GGGGTAACGCCTCGTACGATTGCTAGTATACAAAACAAATTTAAAAACAT
TAAATCTGAAGCAAAACTGGCCTATAATAAATTCAAGAAACATCAAAATG
GCACTGGTGGTGGTCCTCCACCAAAAGAACCGTCTTCATCAGACCAGAGA
ATAATGAGTTTATTCGAAGGGCGTCCCTCTTTTGAGGGCCTTCATGGTTT
TGCAACAAACGCACATGAAACTGAAATCGGATCTTTTTCAACGTCAATGA
TGAGTGAGGTATCAGCAGACCCAATGCTTTCATCGACCGCTATTATGGGT
CCTCAAGATGAAACCAACGAAACAATTCAAAAAACTACGAAAGGAAAACA
AAAAGCCACAGCACCCAAGCAAGGGAAGTCATTAATCAAACGCTCGACGC
TAGCTGCGAATAAGAAAATTCAGAAAAAATGTCTTCTTCAAGAACTTGCA
ATACAAAAGGCTCGTCTGAAAGGCGAACGCCTCAGAAACAAAAACCTTCT
TTTGAAAGAGAGAAACCTNCTCGTCTGAAAGCTTGATTTACTAATCCGAG
GGGTTTCCCCGAAAAAGAAGACCTTGAAGCGCAATTCGAGCAAAATCGAA
TGCGCCGGGGTTTTCCCTCGTTTCCAAAACAAAAACAAAAACAAAACAAA
AAAAAATTCTAAAATCACCAAAACTCAAATAAAAATGGAGAATGTAAATG
AGAAGAAACCAAAGTTCACAAGAAAACCGAACTTTTCAGCAGATGAAACA
CGATTCCTACTAGACTCATACGAAGAATTCAAAGATATCCTTGAAGGAAA
ATTTTCAAATGCTCTTACACAACAAAACAAGAACGAATCATGGCAAAAAA
TAGCCAGCAACGTTAATGCTGTTGGGGTAACGCCTCGTACGATTGCTAGT
ATACAAAACAAATTTAAAAACATTAAATCTGAAGCAAAACTGGCCTATAA
TAAATTCAAGAAACATCAAAATGGCACTGGTGGTGGTCCTCCACCAAAAG
AACCGTCTTCATCAGACCAGAGAATAATGAGTTTATTCGAAGGGCGTCCC
TCTTTTGAGGGCCTTCATGGTTTTGCAACAAACGCACATGAAACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039205XLOC_039205Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062576-proteinTCONS_00062576-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062576-exon-scaffold_369-1575043694:365263..365830TCONS_00062576-exon-scaffold_369-1575043694:365263..365830Clytia hemisphaericaexon
TCONS_00062576-exon-scaffold_369-1575043694:364662..365093TCONS_00062576-exon-scaffold_369-1575043694:364662..365093Clytia hemisphaericaexon
TCONS_00062576-exon-scaffold_369-1510915933:365263..365830TCONS_00062576-exon-scaffold_369-1510915933:365263..365830Clytia hemisphaericaexon
TCONS_00062576-exon-scaffold_369-1510915933:364662..365093TCONS_00062576-exon-scaffold_369-1510915933:364662..365093Clytia hemisphaericaexon
TCONS_00062576-exon-scaffold_369-1491911889:365263..365830TCONS_00062576-exon-scaffold_369-1491911889:365263..365830Clytia hemisphaericaexon
TCONS_00062576-exon-scaffold_369-1491911889:364662..365093TCONS_00062576-exon-scaffold_369-1491911889:364662..365093Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:364662..365830 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.278338	0	0	0	0.225018	0.238981	0	0	0.188979	0	0	0.223813	0.238636	0.0929347	0.0908239	0.0546628	0	0.0529456	0	0	0.189789	0.190368	0	0	0.674175	0.558707	0	0.000254203	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR028002Myb_DNA-bind_5
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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