TCONS_00062573 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062573
Unique NameTCONS_00062573
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1011

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062573 ID=TCONS_00062573|Name=TCONS_00062573|organism=Clytia hemisphaerica|type=transcript|length=1011bp
AACGTATCATCCAATATGGCTCCGGTGTTGTTACTTCGCCTGACAGTGTT
CTTGTTAACATACCCAGTGCTGGCTATCTCAATCAACAAAAACTGCACAA
CATGGTTTACCGGGGAAAATGTTTTATCCAGTAATTTGAACACAATACCT
CTGGGTTGGTACATACCACCTTTCACCCTCAAATCAGCAGATGTTTTCGA
GGAAATGATACATATTTTGAACACGAAGCAGTTTAAAGAAGGTGGACAGC
ACCATGACTGCATGGACTATCTGACAAATGACGTGACAACAAAAACATCT
TCATTCCTTCAAAACCTTCTTAAACAAACACACTCTTCCAAGATGGCGCT
TATCACCAATAACAATAAAGCTTATCACAGCACAACAGCAAACATCATCG
ATAAGTTGACCAATATTGAAGTATCAGAATTCAGTGTCGGTACACTTAAT
GACACCATCTTGAATAATTTCTTCAACACTATTTTACAATTGCAAGCTCA
CACTGTCTTATTACTGATCGAAGAAGCCGACTGGGAAATAGTGAAGAAAT
TTCTTTCagaaagtgtgaacaatgatgTCTTTTAGATTCGTCTCTCCTTT
TCGAAGAATGATACTGAAGCACACAACGATGGAGTGACTTGTTCGTATGA
ACTCTCCATCACAGATCTTCTTGTCGGAAGCAATATCAGTTCAGTTATAC
TGAGCAACAAGAGAACGAACAGAAAATAATCGATGCCATGAAACACAAGA
AAACACGATGTTCCAAGAAGTACAAATCGATCATTCGAGCCGTCAGTATC
ATTGATTCACCTTACCTCGTTGAAACTCCTCATGAAGTGTCAGAGTTTGG
AAATACTGTGTGCAAAGAAGGTTCATTTCCATGTCGTAAAGCTACTGACG
ATGTTGGTAATTCCTGGGTGATTCGTTGCTGCGCAGGGTATGTGATTGAT
GTAGCTGAAATGATGTTTGATTATTTGGGGTATGATTGGACTTTGTATTT
GGTACCTGATG
Run BLAST on NCBI

transcript from alignment at scaffold_369:143041..145846-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062573 ID=TCONS_00062573|Name=TCONS_00062573|organism=Clytia hemisphaerica|type=transcript|length=2806bp|location=Sequence derived from alignment at scaffold_369:143041..145846- (Clytia hemisphaerica)
AACGTATCATCCAATATGGCTCCGGTGTTGTTACTTCGCCTGACAGTGTT
CTTGTTAACATACCCAGTGCTGGCTATCTCAATCAACAAAAACTGCACAA
CATGGTTTACCGGGGAAAATGTTTTATCCAGTAATTTGAACACAATACCT
CTGGGTTGGTACATACCACCTTTCACCCTCAAATCAGCAGATGTTTTCGA
GGAAATGATACATATTTTGAACACGAAGCAGTTTAAAGAAGGTGGACAGG
TAGGAAAATATCTACATATTTTGAGACATGTTGAAAGAAACATGTTTGTT
GTTTGAATATAATGATTTGGGTTTTGCTACTGCGCAGAGCAAAAAGGTGT
GGTATTGACCCTTAAAAAAATTATATTCCTTCTCCTTGACAGCAATATAG
AATGTTATCATTTTCTAACGGATGACTATTTTATCCCTGCTTTACTAATT
TTTTGGACCTACCTCCGGATACCCCGGTGGAGGTCCTTTAAATTAACCAA
TGTTCGTCCGTCCGTTCGTTCGTCTGTTACCAGCTTTTCTCGGGATTGGC
TCATTACTTTTTTCTGTTTTTTGGCACAATGATGCAAAATGATGATTTCT
AAAGAGTAACGGAGCCCGATTTTCGAAATATGCCGGAAAATTTGGTATTT
TTTCGAGATTTTATCATTAGTTCTTTCTGATTTTTTGCTCAAAGATGCGT
ATTAACAATGCCCAAAACATTGCCGAGTGTGATTTTTGAGAAAATCTTTT
TCCGGCCGAAAATGCCGGAAATATAACGGAAATCGCCGTTTTTCTGGATT
TTCATTGGACCTTTTCCTTATAATATTAATAGCAATGCCCACCATCGAAG
CATGTTTCAATTTTCAATAAAATTGATTTTTGAAGCCGGAACTATTCAAA
AATCGCTGGAACAACCTATTTTCGCCGGAAAGACTTGAATATTTTCGACT
TGAATTTCTCGAGCTGTACTTTGTATTTTTTTATGAAATTTTGCACACTG
ATGCAAAATGACAATACCTAAAATGTGACGGAGCCCGATATGTTTTTCAC
ACAAAAACATTATTGATAACAATGCTCACCATCAAGCATGATTCAATGGT
CAATAAAACTGATTTTTGCAACCAGAACTTTCTATTTATTTTTTCCTACA
GCCCTTCCCTCTCCCCCCATCAACAATCAATGATGAATTTATTGCGTTAT
GCATTTTCACTAAACGCTATATTTTCTTTTTCATTTTTCTCCTCGCATTG
CTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTCA
ACCTGACTTTTAGAAAGTTCTGGCTATGACAAAACTACACCCAGTATTTA
TTTTCAACTTTATTCTTTCCAAAGCACCATGACTGCATGGACTATCTGAC
AAATGACGTGACAACAAAAACATCTTCATTCCTTCAAAACCTTCTTAAAC
AAACACACTCTTCCAAGATGGCGCTTATCACCAATAACAATAAAGCTTAT
CACAGCACAACAGCAAACATCATCGATAAGTTGACCAATATTGAAGTATC
AGAATTCAGTGTCGGTACACTTAATGACACCATCTTGAATAATTTCTTCA
ACACTATTTTACAATTGCAAGCTCACACTGTCTTATTACTGATCGAAGAA
GCCGACTGGGAAATAGTGAAGAAATTTCTTTCAGAAAGTGTGAACAATGA
TGTCTTTTAGATTCGTCTCTCCTTTTCGAAGAATGATACTGAAGCACACA
ACGATGGAGTGACTTGTTCGTATGAACTCTCCATCACAGATCTTCTTGTC
GGAAGCAATATCAGGTATACATGTTTTGTTCTTTGTACTTATTTGTGATA
GGTTAACATAAATACAAAGGCTTTTCCATTGAAGACTTAATTACAGTAAT
CACTCGAGGGAAAATCAATTGAGGTCAAATCCCTCTAGTACTAACTAACT
ATCATTGTATATTCAAATCTTTCTGTGATTCGAGGTAAAATATCGGCCTC
TTAGCTCGAAAAAACTCGTTGGCTAATTTGGAGAGATTTCTTGGTCCCAC
CTACAATCAAAATTATAATATTAGGGGGATTCCCTTCAAAATTGTGGACA
CAACAACTCATTTTTAAGTGCTTTAACTAAAGCCAAACGACCTTCCGATC
TCAGGATAAAAAAGCTTAAAAAGTTCCATTAAGGCTGAGTATCAAGTCTG
GAAACCATACTAAAACCCTCCAAAATAAAGTGAAAGTACTGAAATAGGAA
CAACTGCAATTTCTTCTTCAGTTATACTGAGCAACAAGAGAACGAACAGA
AAATAATCGATGCCATGAAACACAAGAAAACACGATGTTCCAAGAAGTAC
AAATCGATCATTCGAGCCGTCAGTATCATTGATTCACCTTACCTCGTTGA
AACTCCTCATGAAGTGTCAGAGTTTGGAAATACTGTGTGCAAAGAAGGTT
CATTTCCATGTCGTAAAGCTACTGACGATGTTGGTAATTCCTGGGTGATT
CGTTGCTGCGCAGGTTAGTAGTGTTGTTCGCCTCACACATTTATTATGTA
GTTTTTTGTTTAAGGTTCAAATGTATCGCCCAGTCAACTCTTTACTCTAA
GATACCGAATAAAGGGGAAGGTACCTCCAAAATTATAAGCTAAAACCAGC
AGTGAATAAACGGGGAGGGAGGTAAGATAACCAGCCAGTCTAGTAAAATT
TTAATTCATCTCTTTCTACTTTACTTTCCAGGGTATGTGATTGATGTAGC
TGAAATGATGTTTGATTATTTGGGGTATGATTGGACTTTGTATTTGGTAC
CTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039203XLOC_039203Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062573-exon-scaffold_369-1575043694:145598..145846TCONS_00062573-exon-scaffold_369-1575043694:145598..145846Clytia hemisphaericaexon
TCONS_00062573-exon-scaffold_369-1575043694:144033..144472TCONS_00062573-exon-scaffold_369-1575043694:144033..144472Clytia hemisphaericaexon
TCONS_00062573-exon-scaffold_369-1575043694:143334..143580TCONS_00062573-exon-scaffold_369-1575043694:143334..143580Clytia hemisphaericaexon
TCONS_00062573-exon-scaffold_369-1575043694:143041..143115TCONS_00062573-exon-scaffold_369-1575043694:143041..143115Clytia hemisphaericaexon
TCONS_00062573-exon-scaffold_369-1510915933:145598..145846TCONS_00062573-exon-scaffold_369-1510915933:145598..145846Clytia hemisphaericaexon
TCONS_00062573-exon-scaffold_369-1510915933:144033..144472TCONS_00062573-exon-scaffold_369-1510915933:144033..144472Clytia hemisphaericaexon
TCONS_00062573-exon-scaffold_369-1510915933:143334..143580TCONS_00062573-exon-scaffold_369-1510915933:143334..143580Clytia hemisphaericaexon
TCONS_00062573-exon-scaffold_369-1510915933:143041..143115TCONS_00062573-exon-scaffold_369-1510915933:143041..143115Clytia hemisphaericaexon
TCONS_00062573-exon-scaffold_369-1491911889:145598..145846TCONS_00062573-exon-scaffold_369-1491911889:145598..145846Clytia hemisphaericaexon
TCONS_00062573-exon-scaffold_369-1491911889:144033..144472TCONS_00062573-exon-scaffold_369-1491911889:144033..144472Clytia hemisphaericaexon
TCONS_00062573-exon-scaffold_369-1491911889:143334..143580TCONS_00062573-exon-scaffold_369-1491911889:143334..143580Clytia hemisphaericaexon
TCONS_00062573-exon-scaffold_369-1491911889:143041..143115TCONS_00062573-exon-scaffold_369-1491911889:143041..143115Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:143041..145846 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0568731	0.0532439	0	0	0.0836754	0.00787464	0.234123	0	0.547875	0.187154	0.867963	0	0	0.397719	0	0.129499	0	0	0	0	1.47587	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062573 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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