TCONS_00062563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062563
Unique NameTCONS_00062563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062563 ID=TCONS_00062563|Name=TCONS_00062563|organism=Clytia hemisphaerica|type=transcript|length=3511bp
AACGACAAAAAACGAACTAACAAATGACTCTTATAGACGCAATAATACAT
ACATAGTTGTGATACACAgtgacaaatttcaaaaataaactcGTGGTTAT
TATAGAGGAGAAAATCAACTTTGTTTGTGTGTGAGTGGAAGGGAAAAGAC
TCTCAAATCGAATATATCCTTTTGGCTTGTTTTGATTCTTATCAACTATT
TCCTATCCGTCGATTGgggtttttgttgaaattgtcaccatactttcatt
gaatgTTTTTGTTGCGACGGGAATCTTATTTTTGATATCCTTTCCAACGG
ACATATCAAGATTTAGAGACAAAAGGGATGTTCTGTTCATCAAAAGAGAA
ATTATCACATTATTGACCTGTTTGATTTTAATGCTACGTACAGAAACAGA
TAATTGTCTACTGAGCAACGATTCTGCAGTggaatcaaaattaaagtttt
attattgtattcttGTTGGTTTTGGTGACTTTGATGGTTAAAGTATAATC
TCAAAACTCATTTTGATTGGATCATTTTGGTGTTTATGAGAGATAATGGA
TTTAATGTTTGTTGTTGTGCTTTTGTTTTGCTTTCATTCGATCACTTTTG
GTATTGAGGATTTAATTTTCGATCGAAAGAAGACGCGCACCAGTCCATAC
CTTGAGAAAGGTGAGATCAAAAACCAGACCGAATTCGTTGGTACAAACGC
TACTATTCCTTGTTACGAATTGATAAGCGGTACTCTACCAGACTTCCGCT
GGCTTCGATGGAAAGGCAAGGAAAACCATACGGTCTTAAACACAATCGCT
ACTGGTACCAGCAAATTCAATAAATCAGTTGTTGAAGTTCTACAAGCTGC
ACGATATAAACAAGTGTCCAAGAAATCACATCGTTCCAACGATCAAGCAC
CACTGTATGGCGTTGAACttgtattttcaaatattacgGAAGCCGACGAA
GGATTCTATACTTGCCTAGTAACCAACCATATTGGTCATGATTACAAGAC
TATGTACTTGACAGTTAAGAAATCAAACACGATAGAGATGACACAACCAG
AGATAGAAGAATCTTCAACAGCTGGCAATGAAACCATGATGATCATCATT
GCAGTTCTGGGAATTCTCGTCTTCATTTCGTTACTTGTATTAGCATGGCT
CTTCTTCAAGTCTTACTTCAAAGGGAAGAAAGGTGGACACAAGAACGACA
CACCATTGGGTGACTTGAAAATCAACATTGATCCACCAGATAAGAATCCA
AGAGCTTTGAGATTAAGGAATTTCTCAAGTGGAGGATCTGGAGCGATGAT
TCCTTTGTTGAATGGTGGAAGTGTCAGAAGTAACTCAGAATCAAGAGCAT
TATATGGTGACTTAGATGatGTTTTCGAGATACCTTTCGATCCTGAATGG
GAAGTGGACAGGAATTTGTTCGTCATCACAGAGACCCTTGGAGAAGGTGC
ATTTGGTGTCGTTGTGAAGGCTACAGCATCTGGTTTAGTACGTGGAGAAG
AACAACATACTACAGTTGCCATCAAAATGTTGAAAGCCGATGCAACGGAG
AACGAACTGATGGATTTACTGTCGGAAATGGACACCATGAAACACATCGG
ACAACATAAGAATATCATCAATTTCCTTGGATGCTGTACACAGCAAGACC
CCGTATACGTCATCGTTGAATTTGCACCAAATGGTAATTTACGTCAATTC
TTACGTTCGAAAAGACCTCCGCCGTCGGATAGCGACCAACGCATGGATCC
TCTTCTCTCTGCCAAAGACATGGTCTCTTTCTCACTACAAATCTCAAAAG
GAATGGACTATTTGGCTTCTAGAAAATGTATTCACCGTGATTTGGCTGCT
CGTAATATTTTGGTTGGAGATGATtacgtcatcaaaattgctGACTTTGG
ATTGGCTAGAAGCGTTCACGAAGTAGATTATTACCGAAAAACAACTGACG
GTCGACTTCCGATCAAGTGGCTGGCTATTGAGGCTCTATTTGATCGCGTC
TACACCACCCAATCAGACGTCTGGGCGTTTGGCGTGTTGCTATGGGAGAT
TTTCACGCTGGGCGGTTCACCCTACCCCGGTATCCCTGttgaaagattgt
ttgatttacTGAAGTCCGGATATCGTATGGAGAAACCGGAAGTTTGTCCC
AAAGAAACATATGAAATCATGGTCAAATGCTGGTATGAGAACCCGACACA
TCGTCCAAGTTTCGCTGACCTTTGTATTGAGTTGGAATTACTCCTTGAAG
AACTAACGAGTCAGGATTACATTCTCGTCAAAGCATCTTCCAAAAAGTCG
GTGAACGACGGCGATGAAAGTAGCGACTATGACGACGAAAACGACGACGA
CGAAGATTATCCCGACGAAACGTCGTTAATACTCGATGAAGACGAAAGCC
GACCTTTCCCGTTCTCGGAGAATCTACAACAACACTTCCATCCACCTGTT
TGAGACGAAGAGTATCGAAGTTTTAAATGGTTGGTTAATCGAGACCGAGT
AGAAGGGAGAATACTCTAGTGGAGTAGTAAAAGAGAAAAGCTACCTAGAT
TCCAAGCTAAGCTTGGATTAGACCCATGGAATTAAAATCGTTGATACTTT
TATACCTAATATAACGTACAATTGGTTTATCGTTGGGTTGGATGGTCATA
GCTTTTTCAAACACAGAGTCAGAATGTATATAGAGCCTACAATGTAAATA
CCGAAAACTGACTTATAGAGCAAATTGAACATTTCTCACCTCAAGCTATG
GATGAGCTTAAGACATTGAATAATCGAGGTTAAATTATTCTACATACTCG
ATATCCTATATCGACAATGTTCGTATAATTCATCGAATAATCTCGATCAA
AAAATAGAAATGTTGATGGTTTAATTTTTTACCCTTTACGTACTTGAAGT
TCAAAAATTGGAattcgttttttatgaaagaaaaaatcctGTTTATAGCa
atatcttttaaaaatcttgtAAACATATTGTATAATAGAATTCATCTAAA
ATTATACCAAAATTATTCCATCTTTTTAGGAATCAAATCCCTTTCAGTGG
GAGGAACCTGAAAAAATGGAATACTTttgcaatcttttttttaaatatcc
ttttttttttaagatttttttattttattttttgttgttgacatGTTGTC
ATGATTGTTTTTCAAAGAGACAAAATGCAACAATTCTTTTCGTGCCCTTC
ACGTGTACTAAACATCAacgaaattttctttctcaaaagtATATAATTTT
CTGcgaaattcccttttaaaatGGAGATTTTCCTATAGACCTTTTTCATC
TAAGAAGTATCTAGATATACTTTTATGAGgaactgttttcaaaaattcaa
gacaaacacttacaaaacaatcttcttttttcaatattctGTTACTTTTT
TTacccaattttattttttatatctattgataatttttctttatgaATAT
ATTCTGCATTTGGACAGAAAATGCAGTAgaataaaatggacaaaaatata
tatttgaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_369:305623..314235+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062563 ID=TCONS_00062563|Name=TCONS_00062563|organism=Clytia hemisphaerica|type=transcript|length=8613bp|location=Sequence derived from alignment at scaffold_369:305623..314235+ (Clytia hemisphaerica)
AACGACAAAAAACGAACTAACAAATGACTCTTATAGACGCAATAATACAT
ACATAGTTGTGATACACAgtgacaaatttcaaaaataaactcGTGGTTAT
TATAGAGGAGAAAATCAACTTTGTTTGTGTGTGAGTGGAAGGGAAAAGAC
TCTCAAATCGAATATATCCTTTTGGCTTGTTTTGATTCTTATCAACTATT
TCCTATCCGTCGATTGgggtttttgttgaaattgtcaccatactttcatt
gaatgTTTTTGTTGCGACGGGAATCTTATTTTTGATATCCTTTCCAACGG
ACATATCAAGATTTAGAGACAAAAGGGATGTTCTGTTCATCAAAAGAGAA
ATTATCACATTATTGACCTGTTTGATTTTAATGCTACGTACAGAAACAGA
TAATTGTCTACTGAGCAACGATTCTGCAGTggaatcaaaattaaagtttt
attattgtattcttGTTGGTTTTGGTGACTTTGATGGTTAAAGTATAATC
TCAAAACTCATTTTGATTGGATCATTTTGGTGTTTATGAGAGATAATGGA
TTTAATGTTTGTTGTTGTGCTTTTGTTTTGCTTTCATTCGATCACTTTTG
GTATTGAGGATTTAATTTTCGATCGAAGTAAGAACCTTGTTTGTTTGACT
GTTTTTGCTATCATGTGAGAACCATACTCAAGGGAATCAGTCTTATTAGG
TGACATGGTTTTCACACGGTAACAAAAATCTTGCCTTTGTCTTTTTAGCA
AAAGTCGAATAAAACCTTTGAGACAGCATCTCGAAAACTGATATTAAAAT
CAGTTCTTTCTCTTAATACAAGCACTCAAAGAACCTTCTCCCCATTCCAC
TTTCAGAGAAGACGCGCACCAGTCCATACCTTGAGAAAGGTGAGATCAAA
AACCAGACCGAATTCGTTGGTACAAACGCTACTATTCCTTGTTACGAATT
GATAAGCGGTACTCTACCAGACTTCCGCTGGCTTCGATGGAAAGGCAAGG
AAAACCATACGGTCTTAAACACAATCGCTACTGGTACCAGCAAATTCAAT
AAATCAGTTGTTGAAGTTCTACAAGCTGCACGATATAAACAAGTGTCCAA
GAAATCACATCGTTCCAACGATCAAGCACCACTGTATGGCGTTGAACttg
tattttcaaatattacgGAAGCCGACGAAGGATTCTATACTTGCCTAGTA
ACCAACCATATTGGTCATGATTACAAGACTATGTACTTGACAGTTAAGAA
ATCAAGTAGGTTTAGATTTTCATTGTCATGTCTTTTTTACCAGCCCTGCA
CTAACAGTACTGATTACTTTAGAAGCTTAAACGTAAATATGCAAACTCCT
GCTTTTGCCTTCACTAAAAGCTTCCAAATAATTGCTCTGAAGTAACATTT
CGATCCATgccaaatatttaaaattttaaagcgAGTTTTAGCCCTTGAGT
TGAGACTACATTTCATATTTTGCAGGTTTTGTTCTTGTTGTTATTCAGTG
ATACTGTACAGCCTGTAATTTTCACTTGTTGTAACTTCTCTTATATTCCT
TTTTCAGACACGATAGAGATGACACAACCAGAGATAGAAGAATCTTCAAC
AGCTGGCAATGAAACCATGATGATCATCATTGCAGTTCTGGGAATTCTCG
TCTTCATTTCGTTACTTGTATTAGCATGGCTCTTCTTCAAGTCTTACTTC
AAAGGGAAGAAAGgtatttgaattgaaaaatctttataCTTATTTTAGCG
CATCcggtaaaatatgaaaatcttttaagaATCAATTTTCAATATCCCTA
TCAGTTCCAAATACCCATTCCTACTTTTCCTCctattatttttctcaaaa
aacataCACGACCAATATTTGAAAGTAAATTCAGACCCTGAATAAACTAA
ATGTTAAAGGAACAATGCTCATCAATAATATCTTTAACCAATACCTCATT
CTTCGTAACAGGTGGACACAAGAACGACACACCATTGGGTGACTTGAAAA
TCAACATTGATCCACCAGATAAGAATCCAAGAGCTTTGAGATTAAGGAAT
TTCTCAAGTGGAGGATCTGGAGCGATGATTCCTTTGTTGAATGGTGGAAG
TGTCAGAAGTAACTCAGAATCAAGAGCATTATATGGTGACTTAGATGGTC
AGTTCTATTCATTTTCCTATTCGAATTATACAAGGGGTATTTTGTTTAGA
AAATAAGTTCGATAGTTAAAGAATTAAGAACATGACAAAGTTTACGCGTT
ACCAAAATGGAAATAGAACTTGAACAAGGTCGAAGTTCTCCGTACAATTC
ATTACTGACAAATgggataaaatatttgaaaaacatgAACTTTAAACTAG
GACTACTATTTGAGTTGATTAAACTTTTGATTGGTTTTCAACCATACATG
TTTCCAATGagtatttgtttttctttttacagatGTTTTCGAGATACCTT
TCGATCCTGAATGGGAAGTGGACAGGAATTTGTTCGTCATCACAGAGACC
CTTGGAGAAGGTGCATTTGGTGTCGTTGTGAAGGCTACAGCATCTGGTTT
AGTACGTGGAGAAGAACAACATACTACAGTTGCCATCAAAATGTTGAAAG
GTAAGATTTCAAGGTCTACAGGCATAAACAGGATAATGTGTTTTTACCTT
AGGTTAGAGATTTCTTTTAGATTTCGGCTTTTGCATCCAATTTCTGTTTG
TTTTCGCCATAACTCAAACGCGCACGGGAAACACAAATTTTGtgatatgg
agtaaggtttaaaaGACATTGCTAAGCAAAGGGACTAgtaaacttgttcg
agttatagaggttcgaattatggagacttCGAAtaatggagactccactg
tattggTTTAACAATTACGGAAACCCTTAACGGCGTGGCTTTAAATTTGT
AAGATGGTATTGTCTACGTTCTTAATTACTAAGATACTATGTCTTCGACT
CAAATCAGATTAAGATGTTTAGAGAAGCAAGGCTCCTCGAGGCTTTTGAT
AAGACTATGTACCCGACAATTCTATTGTCTATAATTTAAGCCCCTCGAGA
TCTAATAAAGTTTTCTCACAGCGGTAGAAATTGAAACGCGATATGTCATA
GTGAAAAACTAAATGGTTTTACTATGAATGATTTCTACCTAGAATATTTT
GGCTAACCCTTTTCGGCTCTATTTGGGATACTTCTAGACAATATCGCCAT
AGACAAAACAGTTTCAATGCATTTAATCTTAGAATAGATTACTATCtgac
ctttttttcaaaattgatttttgtttcaaagCTTCTTGTGTTTAATCATC
CTTAGGAAGCTGCGATGTGCTTGAAATTACCTTTTGGGACAATTGAGAAT
TCTTTTAGGTCCCGATTTTGAACCTGGATACCCTTTAAGagtgttttaaa
aaagaaattatatgTTTCAAAAGTCATCTTAACATTGACGTGACTTTAAA
TTGTCATGTGCGCAAAACATCTTAACCAAAATTGCGACATTTCTTTGGCG
CGCTGTTCAGTTTTTATCatggttaaaaaaaaatttaagcaaAGAAAGTT
CTTTTGTTTGTCTCGGAGGAAGACATTCAAAGACCAATTAATGATTTAAT
TACTTTGAGTAATTAACCCAAAGGAAACTCCTTATAATTAGATGaacctt
tttttaattcattccaTTTTTTCGTgggttaaaaattaaacaaattaaGG
CTCGTgattaacatttttaaaatgtctCTTTATGGACTTTTACTAATTAA
TCAAAGAGAGTTACAGCATTTTTAAAACCAACCTGTAAATTAAGGCAATA
CACGTCtcttagtaaaaaaaaaaaacgaaaacaaataaaaaatctcATCA
CTCATAAAATTTCCGAAACCATAGCAGAGTTTGAGATCGGTTATAtctat
actttaaaaagtttaagcTCACTACTTTTCTACATTTCATAAGCTGCATT
TCAATCAGTTCTTGATAGACTAAGGGAAACCATGACGCAAAAGGGGTGTA
GTTAGCTCTTGATAACATCGTATACTTATATAGTCTGATTCGAagaccta
tacttcctataagaaactttttttcgctagaggatgagcagaagcctaat
aCTTATATGGTCTCAAAAATTCGGAACTTATATTTCGAAATTGTCTTGTT
TATTCAATAGCCGATGCAACGGAGAACGAACTGATGGATTTACTGTCGGA
AATGGACACCATGAAACACATCGGACAACATAAGAATATCATCAATTTCC
TTGGATGCTGTACACAGCAAGGTAAGGACACTTTAAAACCATGCTTTATT
CTAATAGTAAATTGACGTCGATCACAAAATTAACTAATAGAATAGCCTCG
TTAAGCTTCGGTTTGATACGGAATCGAATATCATGGCGGACGAATTTTAG
AGAGTTCGAAAAGCGAACAGTTAAAAAGCCTAAGATTCTATAGATGGACc
atcagtagcgtggtgggtcgacaaaaattcgggcaaactggggaggcaaa
TTTCTAATATTatgattttggcgccccttaTGAAATAGAAATTTCTTTGT
Aaagattatgaaaattttagggtattttatctctttttggccgaaaactg
cCATATCTAAGGTGTAGAAGAGCAAAGGGGCGTCGAAATTAGTAATGAGA
GGCGTCTTTTTGTGCCCTTTGTATTTTGGCACCCCAAAAAAAATCGGCCG
CTgggccaccacgctactggggACCATAGAGATCAGTTATGGACATTTGC
TGAACTGTTTACAGTTGATTAAAACCAACTCTTTTCTCCTACATTAATCT
TACTAGTCAAACATTCCTAACCCTCAAAGGGATTCACCAAAACTAACAAC
CAACTTCACATTTTTCAGACCCCGTATACGTCATCGTTGAATTTGCACCA
AATGGTAATTTACGTCAATTCTTACGTTCGAAAAGACCTCCGCCGTCGGA
TAGCGACCAACGCATGGATCCTCTTCTCTCTGCCAAAGACATGGTCTCTT
TCTCACTACAAATCTCAAAAGGAATGGACTATTTGGCTTCTAGAAAAGTA
AGTAAAATAATTGTGATTTATGAAACATTGTATTACTACCTGGACCTCGA
GATTCTAATCAGACTAAGTTTAGAACTTATCTAAATCCCAATAATCAATA
TAAACAGAAAGAATTCAGTTTATTGCTTttaaaagaaagataattttaat
ttgtgttttttcttcgttactttttgGAGTCATCGAGCATTTTCATGGCA
TTGACCCTAATTAAATAGTTTTAGTCTTACGCTTCAATGAGAGTAAATTC
GACagacatttttttcaataaaataatttttctttctcatgCAGTGTATT
CACCGTGATTTGGCTGCTCGTAATATTTTGGTTGGAGATGATtacgtcat
caaaattgctGACTTTGGATTGGCTAGAAGCGTTCACGAAGTAGATTATT
ACCGAAAAACAACTGACGTAAGCAAATATTCTCTCTTAAGATTCCTCAAG
TACGTCTatgtctttgttgttttttttttactacaaAAAGTACAATGCAT
CGGGAATGATGATTTGAATCTACTAAAGGAGGGCTTCAATAAACGGCGTA
CCTCCAAATTACACAATCTGCTTCACGATTTTTTGCGAACCTTTAAAGTA
TCTTCTTGAGGGCCGGTTGACTATTATCGTAAACGTGCTAGATTTTAGCA
TCAtacaggcacgacggaagctttttatatctggtacggcgaatgaggaa
atttaagcgattttatagcgatttgaccgacgaagaggaaaacttcgggt
atNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttaaaaaaataacaaa
tcatCTTTCCCGTCAATGTGGTGCAAACTATTTTCCGGCCATTTGTGTTT
CCGGCCAAATGTCTAGAATTCTGATCTAGACCGCGTTCATAATGTGTACA
AAATCAAAAGCGTCTCATGATTAGTGTATCTAAATTTAGTATTTTCAGAT
GCCTGTTATTTCATTGCCTTGAACCTTGATTGCGTCTTTTCCAAGGGTAT
AATTAGTATTAGTGCTTTGCTTTTGTTCTTGTGATGACTCTTGAGTCTTG
AACAAAACAACTTTCTGACCTCTATATCGCAGGAAATCTTCAAGAGTAAC
CTGTAAtgaaattgtctaattttcatcggttttcttttttctattcagGG
TCGACTTCCGATCAAGTGGCTGGCTATTGAGGCTCTATTTGATCGCGTCT
ACACCACCCAATCAGACGTCTGGGCGTTTGGCGTGTTGCTATGGGAGATT
TTCACGCTGGGCGGTTCACCCTACCCCGGTATCCCTGttgaaagattgtt
tgatttacTGAAGTCCGGATATCGTATGGAGAAACCGGAAGTTTGTCCCA
AAGAAACGTAAGataattttaccaattttgtatacacattttgaaaatct
ttgatagTGAGTTTTCCCCTGCACATAACAAATTAATCAGTTGATAGGAA
TGAGGCTTTCTGGTCTGATTGTTATTGGAAATTCTATTAAAGAAAAATGT
CATTCTGACTTTGATGATCTTACGATAAATTGGAAaatgaaattcatttt
gaataacaaacttTAGAATAAGTAGAAATGGTAGGGTGGCATAAATGACT
TTAAAGCAACGTTCACTGGTAAAAACGCCAAAATAGCGCTGCGCTTCAGC
CGGTAGTAGTGTTCTATACTGGGTAGCGATCTgacgttttcttttcttta
tctcTATAGATATGAAATCATGGTCAAATGCTGGTATGAGAACCCGACAC
ATCGTCCAAGTTTCGCTGACCTTTGTATTGAGTTGGAATTACTCCTTGAA
GAACTAACGAGTCAGGTAGGTTACGgaatagatttttattttctttaaat
gatttttttgtctttcAATCGTGAAGGATTGACTTCGATACCCTAAGGAT
ACTATCCCATCCGTCATCACTTCATTCAACACCTTGTGACAACCAGGCCA
AGTCAGTAACACCAAGCCTCTCGAATCTGGTTTCTATAAAGACtttaatc
ttcatttttcttacaGGATTACATTCTCGTCAAAGCATCTTCCAAAAAGT
CGGTGAACGACGGCGATGAAAGTAGCGACTATGACGACGAAAACGACGAC
GACGAAGATTATCCCGACGAAACGTCGTTAATACTCGATGAAGACGAAAG
CCGACCTTTCCCGTTCTCGGAGAATCTACAACAACACTTCCATCCACCTG
TTTGAGACGAAGAGTATCGAAGTTTTAAATGGTTGGTTAATCGAGACCGA
GTAGAAGGGAGAATACTCTAGTGGAGTAGTAAAAGAGAAAAGCTACCTAG
ATTCCAAGCTAAGCTTGGATTAGACCCATGGAATTAAAATCGTTGATACT
TTTATACCTAATATAACGTACAATTGGTTTATCGTTGGGTTGGATGGTCA
TAGCTTTTTCAAACACAGAGTCAGAATGTATATAGAGCCTACAATGTAAA
TACCGAAAACTGACTTATAGAGCAAATTGAACATTTCTCACCTCAAGCTA
TGGATGAGCTTAAGACATTGAATAATCGAGGTTAAATTATTCTACATACT
CGATATCCTATATCGACAATGTTCGTATAATTCATCGAATAATCTCGATC
AAAAAATAGAAATGTTGATGGTTTAATTTTTTACCCTTTACGTACTTGAA
GTTCAAAAATTGGAattcgttttttatgaaagaaaaaatcctGTTTATAG
CaatatcttttaaaaatcttgtAAACATATTGTATAATAGAATTCATCTA
AAATTATACCAAAATTATTCCATCTTTTTAGGAATCAAATCCCTTTCAGT
GGGAGGAACCTGAAAAAATGGAATACTTttgcaatcttttttttaaatat
ccttttttttttaagatttttttattttattttttgttgttgacatGTTG
TCATGATTGTTTTTCAAAGAGACAAAATGCAACAATTCTTTTCGTGCCCT
TCACGTGTACTAAACATCAacgaaattttctttctcaaaagtATATAATT
TTCTGcgaaattcccttttaaaatGGAGATTTTCCTATAGACCTTTTTCA
TCTAAGAAGTATCTAGATATACTTTTATGAGgaactgttttcaaaaattc
aagacaaacacttacaaaacaatcttcttttttcaatattctGTTACTTT
TTTTacccaattttattttttatatctattgataatttttctttatgaAT
ATATTCTGCATTTGGACAGAAAATGCAGTAgaataaaatggacaaaaata
tatatttgaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039195XLOC_039195Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062563-exon-scaffold_369-1491911889:305623..306249TCONS_00062563-exon-scaffold_369-1491911889:305623..306249Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1510915933:305623..306249TCONS_00062563-exon-scaffold_369-1510915933:305623..306249Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1575043694:305623..306249TCONS_00062563-exon-scaffold_369-1575043694:305623..306249Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1491911889:306479..306877TCONS_00062563-exon-scaffold_369-1491911889:306479..306877Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1510915933:306479..306877TCONS_00062563-exon-scaffold_369-1510915933:306479..306877Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1575043694:306479..306877TCONS_00062563-exon-scaffold_369-1575043694:306479..306877Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1491911889:307180..307335TCONS_00062563-exon-scaffold_369-1491911889:307180..307335Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1510915933:307180..307335TCONS_00062563-exon-scaffold_369-1510915933:307180..307335Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1575043694:307180..307335TCONS_00062563-exon-scaffold_369-1575043694:307180..307335Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1491911889:307584..307769TCONS_00062563-exon-scaffold_369-1491911889:307584..307769Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1510915933:307584..307769TCONS_00062563-exon-scaffold_369-1510915933:307584..307769Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1575043694:307584..307769TCONS_00062563-exon-scaffold_369-1575043694:307584..307769Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1491911889:308055..308222TCONS_00062563-exon-scaffold_369-1491911889:308055..308222Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1510915933:308055..308222TCONS_00062563-exon-scaffold_369-1510915933:308055..308222Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1575043694:308055..308222TCONS_00062563-exon-scaffold_369-1575043694:308055..308222Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1491911889:309783..309893TCONS_00062563-exon-scaffold_369-1491911889:309783..309893Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1510915933:309783..309893TCONS_00062563-exon-scaffold_369-1510915933:309783..309893Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1575043694:309783..309893TCONS_00062563-exon-scaffold_369-1575043694:309783..309893Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1491911889:310491..310669TCONS_00062563-exon-scaffold_369-1491911889:310491..310669Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1510915933:310491..310669TCONS_00062563-exon-scaffold_369-1510915933:310491..310669Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1575043694:310491..310669TCONS_00062563-exon-scaffold_369-1575043694:310491..310669Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1491911889:310967..311089TCONS_00062563-exon-scaffold_369-1491911889:310967..311089Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1510915933:310967..311089TCONS_00062563-exon-scaffold_369-1510915933:310967..311089Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1575043694:310967..311089TCONS_00062563-exon-scaffold_369-1575043694:310967..311089Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1491911889:312121..312329TCONS_00062563-exon-scaffold_369-1491911889:312121..312329Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1510915933:312121..312329TCONS_00062563-exon-scaffold_369-1510915933:312121..312329Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1575043694:312121..312329TCONS_00062563-exon-scaffold_369-1575043694:312121..312329Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1491911889:312682..312787TCONS_00062563-exon-scaffold_369-1491911889:312682..312787Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1510915933:312682..312787TCONS_00062563-exon-scaffold_369-1510915933:312682..312787Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1575043694:312682..312787TCONS_00062563-exon-scaffold_369-1575043694:312682..312787Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1491911889:312989..314235TCONS_00062563-exon-scaffold_369-1491911889:312989..314235Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1510915933:312989..314235TCONS_00062563-exon-scaffold_369-1510915933:312989..314235Clytia hemisphaericaexon
TCONS_00062563-exon-scaffold_369-1575043694:312989..314235TCONS_00062563-exon-scaffold_369-1575043694:312989..314235Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:305623..314235 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.000858344	1.5037	0.942581	0.770074	9.13395	5.91402	0.841156	0.759076	1.53346	1.97757	0	1.75478	0.728535	0.596551	4.13147	1.61646	2.34394	1.5706	1.21745	0.155954	1.44678	2.11478	0.560131	1.33233	0.314037	0.350823	0	1.08424	1.02345	0
Blast
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BLAST of TCONS_00062563 vs. Swiss-Prot (Human)
Match: FGFR3 (Fibroblast growth factor receptor 3 OS=Homo sapiens GN=FGFR3 PE=1 SV=1)

HSP 1 Score: 395.971 bits (1016), Expect = 8.185e-121
Identity = 235/550 (42.73%), Postives = 319/550 (58.00%), Query Frame = 3 
Query:  615 IFDRKKTRTSPYLEKGEIKNQTEFVGTNATIPCYELISGTLPDFRWLRWKGKENHTVLNTIATGTSKFNKSVVEVLQAARYKQVSKKSHRSNDQAPLYGVELVFSNITEADEGFYTCLVTNHIGHDYKTMYLTVKKSNTIEMTQPEIEESSTAGNETMMIIIAVLGILVFISLLVLAWLXXXXXXXXXXXXXXNDTPLGDLKINIDPPDKNPRALRLRNFSSGGSGAMIPLLNGGSVRSNSE----SRALYGD---LDDV--FEIPFDPEWEVDRNLFVITETLGEGAFGVVVKATASGLVRGE-EQHTTVAIKMLKADATENELMDLLSEMDTMKHIGQHKNIINFLGCCTQQDPVYVIVEFAPNGNLRQFLRSKRPP----PSDSDQRMDPLLSAKDMVSFSLQISKGMDYLASRKCIHRDLAARNILVGDDYVIKIADFGLARSVHEVDYYRKTTDGRLPIKWLAIEALFDRVYTTQSDVWAFGVLLWEIFTLGGSPYPGIPVERLFDLLKSGYRMEKPEVCPKETYEIMVKCWYENPTHRPSFADL 2222
            + +R   R  P L+ G   NQT  +G++    C ++ S   P  +WL+      H  +N    G        V VL+ A      K+              L   N+T  D G YTCL  N IG  + + +L V  +      + E+ E+  AG+    I+   +G  +FI  LV+A +                  L  L+    PP K   +  +   S       + L +  S+ SN+     +R   G+   L +V   E+P DP+WE+ R    + + LGEG FG VV A A G+ +    +  TVA+KMLK DAT+ +L DL+SEM+ MK IG+HKNIIN LG CTQ  P+YV+VE+A  GNLR+FLR++RPP      D+ +  +  L+ KD+VS + Q+++GM+YLAS+KCIHRDLAARN+LV +D V+KIADFGLAR VH +DYY+KTT+GRLP+KW+A EALFDRVYT QSDVW+FGVLLWEIFTLGGSPYPGIPVE LF LLK G+RM+KP  C  + Y IM +CW+  P+ RP+F  L
Sbjct:  245 VLERSPHR--PILQAGLPANQTAVLGSDVEFHC-KVYSDAQPHIQWLK------HVEVNGSKVGPD--GTPYVTVLKTAGANTTDKELE-----------VLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA------EEELVEADEAGSVYAGILSYGVGFFLFI--LVVAAVT-----------------LCRLR---SPPKKGLGSPTVHKISRFPLKRQVSLESNASMSSNTPLVRIARLSSGEGPTLANVSELELPADPKWELSRARLTLGKPLGEGCFGQVVMAEAIGIDKDRAAKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGLDYSFDTCKPPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQL 744
The following BLAST results are available for this feature:
BLAST of TCONS_00062563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FGFR38.185e-12142.73Fibroblast growth factor receptor 3 OS=Homo sapien... [more]
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