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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062562 ID=TCONS_00062562|Name=TCONS_00062562|organism=Clytia hemisphaerica|type=transcript|length=3697bpRun BLAST on NCBI transcript from alignment at scaffold_369:303227..314235+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062562 ID=TCONS_00062562|Name=TCONS_00062562|organism=Clytia hemisphaerica|type=transcript|length=11009bp|location=Sequence derived from alignment at scaffold_369:303227..314235+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00062562 vs. Swiss-Prot (Human)
Match: FGFR3 (Fibroblast growth factor receptor 3 OS=Homo sapiens GN=FGFR3 PE=1 SV=1) HSP 1 Score: 399.438 bits (1025), Expect = 1.145e-121 Identity = 256/642 (39.88%), Postives = 351/642 (54.67%), Query Frame = 3
Query: 534 WLINGTVVRPDDRI---QFRKRNTVLKMKDATRRDIGEYTCQEITGNIKKEVIVYKVEFDVEDQNALQFTRFTDMKIQSHIVMPSGDVLKLDCKAIEKTRTSPYLEKGEIKNQTEFVGTNATIPCYELISGTLPDFRWLRWKGKENHTVLNTIATGTSKFNKSVVEVLQAARYKQVSKKSHRSNDQAPLYGVELVFSNITEADEGFYTCLVTNHIGHDYKTMYLTVKKSNTIEMTQPEIEESSTAGNETMMIIIAVLGILVFISLLVLAWLXXXXXXXXXXXXXXNDTPLGDLKINIDPPDKNPRALRLRNFSSGGSGAMIPLLNGGSVRSNSE----SRALYGD---LDDV--FEIPFDPEWEVDRNLFVITETLGEGAFGVVVKATASGLVRGE-EQHTTVAIKMLKADATENELMDLLSEMDTMKHIGQHKNIINFLGCCTQQDPVYVIVEFAPNGNLRQFLRSKRPP----PSDSDQRMDPLLSAKDMVSFSLQISKGMDYLASRKCIHRDLAARNILVGDDYVIKIADFGLARSVHEVDYYRKTTDGRLPIKWLAIEALFDRVYTTQSDVWAFGVLLWEIFTLGGSPYPGIPVERLFDLLKSGYRMEKPEVCPKETYEIMVKCWYENPTHRPSFADL 2408
WL NG R + RI + R + L M+ D G YTC VE+ +F ++ Q++ + DVL E++ P L+ G NQT +G++ C ++ S P +WL+ H +N G V VL+ A K+ L N+T D G YTCL N IG + + +L V + + E+ E+ AG+ I+ +G +FI LV+A + L L+ PP K + + S + L + S+ SN+ +R G+ L +V E+P DP+WE+ R + + LGEG FG VV A A G+ + + TVA+KMLK DAT+ +L DL+SEM+ MK IG+HKNIIN LG CTQ P+YV+VE+A GNLR+FLR++RPP D+ + + L+ KD+VS + Q+++GM+YLAS+KCIHRDLAARN+LV +D V+KIADFGLAR VH +DYY+KTT+GRLP+KW+A EALFDRVYT QSDVW+FGVLLWEIFTLGGSPYPGIPVE LF LLK G+RM+KP C + Y IM +CW+ P+ RP+F L
Sbjct: 188 WLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCV------------------VEN-------KFGSIR-QTYTL----DVL-------ERSPHRPILQAGLPANQTAVLGSDVEFHC-KVYSDAQPHIQWLK------HVEVNGSKVGPD--GTPYVTVLKTAGANTTDKELEV-----------LSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPA------EEELVEADEAGSVYAGILSYGVGFFLFI--LVVAAVT-----------------LCRLR---SPPKKGLGSPTVHKISRFPLKRQVSLESNASMSSNTPLVRIARLSSGEGPTLANVSELELPADPKWELSRARLTLGKPLGEGCFGQVVMAEAIGIDKDRAAKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGLDYSFDTCKPPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNLDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQL 744 The following BLAST results are available for this feature:
BLAST of TCONS_00062562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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