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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062561 ID=TCONS_00062561|Name=TCONS_00062561|organism=Clytia hemisphaerica|type=transcript|length=1141bp
gtgaaatgaaacaataaatattCGAAATAAAAAGATACCACCCATTACTC
AGGTGGCCGAATTTAAATATCAGAGTTATTACACAGCACAAAGAGCTGGC
GATAATCAGCGACCTACATTGAATCCAATTTTACACCAAcattgacattt
ttttttacccaagttgtaaaaaagaaagatttttaatgCACAAATAACAC
ATAACCTTCTAAACCACTCACAATAAAAACGATATATAAATTCGATTGAA
ATCGATCATGGCTTGCGATTGTCAAAATCGACGAACCAATGAACAATACT
TCGAAAGGCTGCAAAACAGGAGCAAAATGATATACAACAAGAACACTCAA
AAGCCAAATAGAAAATACATTTATCATTACCATACTTCACCTTGGGTCCT
AAAAACTTTATTAATATTCTGTATTCTAATAGCTGCCAGTCCTGTCACGA
AGGGAATGAAACTGGGGGAACGAATCCGATTATTTTGTTTCCCGAATGAA
AAACCCGAAACTCTGAATAGACGTCTGTTCCGGTGGCTAATCAACGGAAC
AGTAGTGAGACCAGATGACCGGATACAGTTCCGCAAGAGAAATACCGTAT
TGAAGATGAAAGATGCCACCAGGCGGGACATAGGTGAATACACATGCCAA
GAAATTACCGGTAATATCAAGAAAGAAGTCATCGTCTATAAAGTTGAATT
TGATGTTGAAGATCAAAATGCGTTACAGTTTACTCGTTTCACTGATATGA
AAATCCAATCCCACATTGTTATGCCGTCCGGTGATGTCTTAAAACTGGAC
TGCAAAGCTATCGGCAAAGAACCAATCCGTTACTCTTGGTACAAAGATGG
AAAAATCCTACTGACGCGTCGCGTTGATTCGTCACTTGTCACCGATCGTC
ATGATTTGATTCTGAAAGATCTGGTGCCATCAGACTCTGCTACTTATACG
TGTAAAGTTGAAAATAACTTTAAANACAGTTCCGCAAGAGAAATACCGTA
TTGAAGATGAAAGATGCCACCAGGCGGGACATAGGTGAATACACATGCCA
AGAAATTACCGGTAATATCAAGAAAGAAGTCATCGTCTATAAAGTTGAAT
TTGgtaagattttcattttgatgataAGCTAATGATTCCTG Run BLAST on NCBI transcript from alignment at scaffold_369:303227..304732+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062561 ID=TCONS_00062561|Name=TCONS_00062561|organism=Clytia hemisphaerica|type=transcript|length=1506bp|location=Sequence derived from alignment at scaffold_369:303227..304732+ (Clytia hemisphaerica)
gtgaaatgaaacaataaatattCGAAATAAAAAGATACCACCCATTACTC
AGGTGGCCGAATTTAAATATCAGAGTTATTACACAGCACAAAGAGCTGGC
GATAATCAGCGACCTACATTGAATCCAATTTTACACCAAcattgacattt
ttttttacccaagttgtaaaaaagaaagatttttaatgCACAAATAACAC
ATAACCTTCTAAACCACTCACAATAAAAACGATATATAAATTCGATTGAA
ATCGATCATGGCTTGCGATTGTCAAAATCGACGAACCAATGAACAATACT
TCGAAAGGCTGCAAAACAGGAGCAAAATGATATACAACAAGAACACTCAA
AAGCCAAATAGAAAATACATTTATCATTACCATACTTCACCTTGGGTCCT
AAAAACTTTATTAATATTCTGTATTCTAATAGCTGCCAGTCCTGTCACGA
AGGGAATGAAACTGGGGGAACGAATCCGATTATTTTGTTTCCCGAATGAA
AAACCCGAAACTCTGAATAGACGTCTGTTCCGGTGGCTAATCAACGGAAC
AGTAGTGAGACCAGATGACCGGATACAGTTCCGCAAGAGAAATACCGTAT
TGAAGATGAAAGATGCCACCAGGCGGGACATAGGTGAATACACATGCCAA
GAAATTACCGGTAATATCAAGAAAGAAGTCATCGTCTATAAAGTTGAATT
TGgtaagattttcattttgatgataAGCTAATGATTCCTGGGCTGATTAC
GCTTTGAAGAGGTTAAATtatggattttttcattttcttcgaattataga
aaggatTCGGATTACGGAGAATATTCTGTAAAACTTTCCAGTTGACGGGA
CCAATCTTTTTGTTAGAATTACGAAACGAAAGAtcacgaaaaatttgaaa
aatattagtGCGAAATATAGATTTGACTATAGTAAATTCTTAGAAATAAA
CTGCCAAGGAGATACCGGGGTCAGGAGTGTTTGCGCTCTGATAACGATTT
TCCTTTAAACCAAAGAATAAAATACAATGCGGGAATTCCTTTAAATTTCC
TTTCTTTTGTTCCACAGATGTTGAAGATCAAAATGCGTTACAGTTTACTC
GTTTCACTGATATGAAAATCCAATCCCACATTGTTATGCCGTCCGGTGAT
GTCTTAAAACTGGACTGCAAAGCTATCGGCAAAGAACCAATCCGTTACTC
TTGGTACAAAGATGGAAAAATCCTACTGACGCGTCGCGTTGATTCGTCAC
TTGTCACCGATCGTCATGATTTGATTCTGAAAGATCTGGTGCCATCAGAC
TCTGCTACTTATACGTGTAAAGTTGAAAATAACTTTAAANACAGTTCCGC
AAGAGAAATACCGTATTGAAGATGAAAGATGCCACCAGGCGGGACATAGG
TGAATACACATGCCAAGAAATTACCGGTAATATCAAGAAAGAAGTCATCG
TCTATAAAGTTGAATTTGgtaagattttcattttgatgataAGCTAATGA
TTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062561-exon-scaffold_369-1491911889:303227..303928 | TCONS_00062561-exon-scaffold_369-1491911889:303227..303928 | Clytia hemisphaerica | exon |
| TCONS_00062561-exon-scaffold_369-1510915933:303227..303928 | TCONS_00062561-exon-scaffold_369-1510915933:303227..303928 | Clytia hemisphaerica | exon |
| TCONS_00062561-exon-scaffold_369-1575043694:303227..303928 | TCONS_00062561-exon-scaffold_369-1575043694:303227..303928 | Clytia hemisphaerica | exon |
| TCONS_00062561-exon-scaffold_369-1491911889:304294..304732 | TCONS_00062561-exon-scaffold_369-1491911889:304294..304732 | Clytia hemisphaerica | exon |
| TCONS_00062561-exon-scaffold_369-1510915933:304294..304732 | TCONS_00062561-exon-scaffold_369-1510915933:304294..304732 | Clytia hemisphaerica | exon |
| TCONS_00062561-exon-scaffold_369-1575043694:304294..304732 | TCONS_00062561-exon-scaffold_369-1575043694:304294..304732 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_369 | supercontig | scaffold_369:303227..304732 + |
Blast
The following BLAST results are available for this feature:
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