|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062554 ID=TCONS_00062554|Name=TCONS_00062554|organism=Clytia hemisphaerica|type=transcript|length=2161bpRun BLAST on NCBI protein sequence of TCONS_00062554-protein >TCONS_00062554-protein ID=TCONS_00062554-protein|Name=TCONS_00062554-protein|organism=Clytia hemisphaerica|type=polypeptide|length=573bp MNLATYICNEGLIIILFISWLLTNGFLFFWCYFTMRFDDKFHYMYLMLGERun BLAST on NCBI transcript from alignment at scaffold_369:112508..126938+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00062554 ID=TCONS_00062554|Name=TCONS_00062554|organism=Clytia hemisphaerica|type=transcript|length=14431bp|location=Sequence derived from alignment at scaffold_369:112508..126938+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_369:112508..126938+ >TCONS_00062554 ID=TCONS_00062554|Name=TCONS_00062554|organism=Clytia hemisphaerica|type=CDS|length=24108bp|location=Sequence derived from alignment at scaffold_369:112508..126938+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00062554 vs. Swiss-Prot (Human)
Match: NOX4 (NADPH oxidase 4 OS=Homo sapiens GN=NOX4 PE=1 SV=2) HSP 1 Score: 274.248 bits (700), Expect = 8.298e-82 Identity = 183/602 (30.40%), Postives = 298/602 (49.50%), Query Frame = 3
Query: 180 TYICNEGLIIILFISWLLTNGFLFFWCYFTMRFDDKFHYMYLMLGEVIFLARGTGILLNFNCALVLLPMNKFINSWIRSRLFKNTKGSFRRLFDHSKGIHITLALTICILSVVHTALHIYXXXXXXXXXXXXVPDINLQNTRGRTTLLSFCATIPGFTGLIMLVIALLLSVSSFKAVRRLHHNLFDFLHYLSSVFLIVLVFHGFGKITKYQTNLDQHPLQCHHLD----GKIKLEE----------------------------CKAEPSFNYVQASSWKWLATSFIIHIIDRLIRLWCRWQECDVISMNKTDSDVIELVFRKKGFKAKPGQYVRLQCAEISEFEWHAFTLTKCPSKLSDGEQTFSVHIKVVGDWTMRLANLVXXXXXXXXXXXXXXXXDHVIDIKDDVTKENKPIKLVFRIDGSYGSPHEDAFRFPINISIATGIGITPFLATIRDLKNYERRTTKGTFKLKKFHLIWVCRSIKEFIWILDEIDDVEQILRANNVEDLLDIRIFVTQ-EKVEQIQSYLPSLNVDSEWVSSKVKYGRPFIKSEIETIISPLEKERVGVFYCGSPTLGKKIYTDVKNLKRGSNILIFNKESFG 1886
+++ NEG+ + WL N LF+ + ++HY++ MLG + L+R + +LN NC+L+LLPM + + +++R K RRL D S+ HIT +TICI S VH A H+ N +F N+S ++N R T+PG TG+ M+V+ L+ +S A+R ++++F + H L VF ++L H G + KYQTNLD HP C L+ I L E C EP F +W W++ ++ +RL R + +IS+ SDV+E+ K+ FKA+PGQY+ L C +S E H FTLT CP ++ + TF VH+K+VGDWT R +L+ ++++ +I + N P KL IDG +GSP E++ + +++ +A GIG+TPF + + L + + +KL++ + IWVCR I+ F W D + + N D ++I+++++Q + +++I + ++S++ GRP K + I + VGVF CG +L K ++ +NKESF
Sbjct: 7 SWLANEGVKHLCLFIWLSMNVLLFWKTFLLYNQGPEYHYLHQMLGLGLCLSRASASVLNLNCSLILLPMCRTLLAYLRGSQ-KVPSRRTRRLLDKSRTFHITCGVTICIFSGVHVAAHLVNALNFSVNYSEDFVELNAARYRDEDPRKLLFTTVPGLTGVCMVVVLFLMITASTYAIRVSNYDIFWYTHNLFFVFYMLLTLHVSGGLLKYQTNLDTHPPGCISLNRTSSQNISLPEYFSEHFHEPFPEGFSKPAEFTQHKFVKICMEEPRFQANFPQTWLWISGPLCLYCAERLYRYIRSNKPVTIISVMSHPSDVMEIRMVKENFKARPGQYITLHCPSVSALENHPFTLTMCP---TETKATFGVHLKIVGDWTERFRDLLLPPSSQDS------------EILPFIQSRNYP-KLY--IDGPFGSPFEESLNYEVSLCVAGGIGVTPFASILNTLLDDWK-----PYKLRRLYFIWVCRDIQSFRWFADLLCMLHNKFWQENRPDYVNIQLYLSQTDGIQKI------IGEKYHALNSRLFIGRPRWKLLFDEIAKYNRGKTVGVFCCGPNSLSKTLHKLSNQNNSYGTRFEYNKESFS 578 The following BLAST results are available for this feature:
BLAST of TCONS_00062554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.