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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062553 ID=TCONS_00062553|Name=TCONS_00062553|organism=Clytia hemisphaerica|type=transcript|length=549bp CAGCAATCACGCAAATTATTCGTACCGTGAGTCGTGATTCGACAGGTTCA AGTGGTTCCCGGAACTCAATGAACTTCTCTGGACGTTTTCAAAACCTCGT CACTCTGATGGCACATCCTTTCGCGTTGAAGTATGCTGGTTCTGAAGATG ACAACCATTCGTTATCGACAATCGGACGAGAATATAAAGATGATGACAGA GTACCGTTGCACACTTATCTCGATCTTGGTCTCGATGGATTAATAAGAGA GACAAATTTCACTCGTGAAGAAATACAGAGAATGTATCGTGGCTTCAAGC AGgaaTGCCCAAGAGGTCTTCTGGACGAGGAGACATTTCTGGCCATTTTG AACATGCTTTTCCCGGGAGGTGATCCAACGTTATATTGTAGTCGAATATT CAACACTTTCGACCGAAGAAAGACTGGAAAGCTAACTTTTGAGGTAAGCC ACCGTCATTACGTATATACAGTgggcgctctctaattcgacgttctacta ttcgataagctcccgttttcgatcaaattgaaagtcaccATCAAATTTC Run BLAST on NCBI protein sequence of TCONS_00062553-protein >TCONS_00062553-protein ID=TCONS_00062553-protein|Name=TCONS_00062553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
AITQIIRTVSRDSTGSSGSRNSMNFSGRFQNLVTLMAHPFALKYAGSEDD NHSLSTIGREYKDDDRVPLHTYLDLGLDGLIRETNFTREEIQRMYRGFKQ ECPRGLLDEETFLAILNMLFPGGDPTLYCSRIFNTFDRRKTGKLTFEVSH RHYVYTVGAL Run BLAST on NCBI transcript from alignment at scaffold_369:99277..101842+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062553 ID=TCONS_00062553|Name=TCONS_00062553|organism=Clytia hemisphaerica|type=transcript|length=2566bp|location=Sequence derived from alignment at scaffold_369:99277..101842+ (Clytia hemisphaerica) CAGCAATCACGCAAATTATTCGTACCGTGAGTCGTGATTCGACAGGTTCA
AGTGGTTCCCGGAACTCAATGAACTTCTCTGGACGTTTTCAAAACCTCGT
CACTCTGATGGCACATCGTAAGTGTTTGAGATTCAAAGTACAGTTGTTCA
AAGACAGTGGTATATTAGCTCTTCACGATATGTTTAAGTCATTTTCTTTA
ACGGAAACACCGGAAAAAACCGGGACTTGATCACTGGCTGTTATTAAAAT
AGAAACATAGCATGCAAAGTCCGGCTTTATCAGGGTGctttcgttggaaa
gatattaccTCATTTTGACTTACGAATGTCATAGTTTACTAGTTTCTTCT
TGAGAAGTGTTAATTATCAGTGATAGGTCATAAAGTTACTAGGCTATGTT
GAGAATTTTACAGTGTGtggaattttgaatgaaaaaaaaacaattttgag
gGAGAGATctcgattttttttaattgtttgtaATATTCTCATCACCCTTG
TAGATGCTTTACGACCACTCCCTTACCTCGCTATTAAGTTTAGATTTATA
TAAAGTTTATACAGTACAGACAAGAAATTGACCTCTTGAAAGCTTCGATT
TACTTGACATAAAAAAGTCCCGAAAAAGTTCGAGTTGTTTGTGACACAGG
AGTGTTATTATGCCCAGACcctaaagaatttttttcgaaattgagAAAGC
TTGTCGCTATGAAGTACAGCTGAAGTTAGAAACCAAAAATCCTCTTTACC
TAAATCTGTTTAATTTTTTCTCCGGAACCCTTAAACCTTTGTTTAGGccc
ttttggaaatttttttccagaaatttGGGGTTTGAAAAACCTTTTGGAAA
CAGGATTCGACACCGTAAGGTGCTTTGAtaagatgaaaaagaaacacTGC
AAATCTGGAaaggatttttgaaatattatggtttgaaaaatatttcgagt
gaaaaatgttgaaagtcGCCTTAATCTCCTGTTGTTTTGTAGCATATTGC
TGTTATGAAATATTCACTTAAATCCTCCACAAAACTTATTAgtttatttt
caaagtttttccaCATTCCTCTTGGACACAAAGGGAATGATTACAGTTTT
CTAATGTTCCTTGTTATTCCGACGAAGGACCTCGTTAGTGTTGTAGTCTG
TCTGCAGACTTTTTCTCAAGTGTTGTTAATAGACTTGATATGGCCTGTTT
TTCAGCTTTCGCGTTGAAGTATGCTGGTTCTGAAGATGACAACCATTCGT
TATCGACAATCGGACGAGAATATAAAGGTAAGATATTTTGATACTACACC
Ctcttctcatagacccactgggaccccttccctctgaaaaaattggccaa
cATATCGTCCCCGCTGAAAACTATACTCCAATTTTTTGTCGCCACTGAAA
TAATCAAatgaaccaatcctcactgcaaatttcttttgctttttatccat
cccactgaattttctgacttgataaaacaatggaatttaaatccccagcc
ataaaaatatgttaataTAAATCCCTATCATGTTTCAGTCCgaaaaaaat
tccaccggggccGTAAGAAGGGGATAGGATACTATATTTCGTTCTACCCA
TTGCGTTTTAAACGACTGTTCATTCATATGTTGTTAAACCTTAGATCAAT
GCTACTAAAGTGTATTTGCTAAGGGTGCAATATTATTGTTAAAATATGGA
AATcggaattcgaatttttttgataatggAGCAAGTTGGATTCTCTAACC
ATGCCCCATTCTATTTTTCTTAAACgcttcgaaaaaaaagtttagaaatt
acaCGAAGGGGCGGAACCTCGTGCGTTCTTCCgttattttcatctttatt
ttcttgAGATGCCCAAAATTGAATCCGGCATGACTGTTTTACgttataaa
ttttttgatttgattagtTTCCATTCCCCTTTCTTGATGCTTCAGATGAT
GACAGAGTACCATTGCACACTTATCTCGATCTTGNCTTTCTTGACGCTTC
AGATGATGACAGAGTACCGTTGCACACTTATCTCGATCTTGGTCTCGATG
GATTAATAAGAGAGACAAATTTCACTCGTGAAGAAATACAGAGAATGTAT
CGTGGCTTCAAGCAGGTAGActtattaaataataaagtttcTCTCAAAAC
TGAGTATAGTAGTCTTTTATTCCGATATGCATGTTTTATTGGTAGTCGAA
GCATTTGTTGAAAGAatggaggttcgagttaaagagacttcaCTGTATTT
GATCTTAAAGCCGAACTGAGAGCTCTCTGAAAAATTTAGTTTGATTaccg
ataattttttttttctcaggaaTGCCCAAGAGGTCTTCTGGACGAGGAGA
CATTTCTGGCCATTTTGAACATGCTTTTCCCGGGAGGTGATCCAACGTTA
TATTGTAGTCGAATATTCAACACTTTCGACCGAAGAAAGACTGGAAAGCT
AACTTTTGAGGTAAGCCACCGTCATTACGTATATACAGTgggcgctctct
aattcgacgttctactattcgataagctcccgttttcgatcaaattgaaa
gtcaccATCAAATTTC Coding sequence (CDS) from alignment at scaffold_369:99277..101842+ >TCONS_00062553 ID=TCONS_00062553|Name=TCONS_00062553|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_369:99277..101842+ (Clytia hemisphaerica) GCAATCACGCAAATTATTCGTACCGTGAGTCGTGATTCGACAGGTTCAAG TGGTTCCCGGAACTCAATGAACTTCTCTGGACGTTTTCAAAACCTCGTCA CTCTGATGGCACATCCTTTCGCGTTGAAGTATGCTGGTTCTGAAGATGAC AACCATTCGTTATCGACAATCGGACGAGAATATAAAGATGATGACAGAGT ACCGTTGCACACTTATCTCGATCTTGGTCTCGATGGATTAATAAGAGAGA CAAATTTCACTCGTGAAGAAATACAGAGAATGTATCGTGGCTTCAAGCAG gaaTGCCCAAGAGGTCTTCTGGACGAGGAGACATTTCTGGCCATTTTGAA CATGCTTTTCCCGGGAGGTGATCCAACGTTATATTGTAGTCGAATATTCA ACACTTTCGACCGAAGAAAGACTGGAAAGCTAACTTTTGAGGTAAGCCAC CGTCATTACGTATATACAGTgggcgctctctaaGCAATCACGCAAATTAT TCGTACCGTGAGTCGTGATTCGACAGGTTCAAGTGGTTCCCGGAACTCAA TGAACTTCTCTGGACGTTTTCAAAACCTCGTCACTCTGATGGCACATCCT TTCGCGTTGAAGTATGCTGGTTCTGAAGATGACAACCATTCGTTATCGAC AATCGGACGAGAATATAAAGATGATGACAGAGTACCGTTGCACACTTATC TCGATCTTGGTCTCGATGGATTAATAAGAGAGACAAATTTCACTCGTGAA GAAATACAGAGAATGTATCGTGGCTTCAAGCAGgaaTGCCCAAGAGGTCT TCTGGACGAGGAGACATTTCTGGCCATTTTGAACATGCTTTTCCCGGGAG GTGATCCAACGTTATATTGTAGTCGAATATTCAACACTTTCGACCGAAGA AAGACTGGAAAGCTAACTTTTGAGGTAAGCCACCGTCATTACGTATATAC AGTgggcgctctctaaGCAATCACGCAAATTATTCGTACCGTGAGTCGTG ATTCGACAGGTTCAAGTGGTTCCCGGAACTCAATGAACTTCTCTGGACGT TTTCAAAACCTCGTCACTCTGATGGCACATCCTTTCGCGTTGAAGTATGC TGGTTCTGAAGATGACAACCATTCGTTATCGACAATCGGACGAGAATATA AAGATGATGACAGAGTACCGTTGCACACTTATCTCGATCTTGGTCTCGAT GGATTAATAAGAGAGACAAATTTCACTCGTGAAGAAATACAGAGAATGTA TCGTGGCTTCAAGCAGgaaTGCCCAAGAGGTCTTCTGGACGAGGAGACAT TTCTGGCCATTTTGAACATGCTTTTCCCGGGAGGTGATCCAACGTTATAT TGTAGTCGAATATTCAACACTTTCGACCGAAGAAAGACTGGAAAGCTAAC TTTTGAGGTAAGCCACCGTCATTACGTATATACAGTgggcgctctctaaG CAATCACGCAAATTATTCGTACCGTGAGTCGTGATTCGACAGGTTCAAGT GGTTCCCGGAACTCAATGAACTTCTCTGGACGTTTTCAAAACCTCGTCAC TCTGATGGCACATCCTTTCGCGTTGAAGTATGCTGGTTCTGAAGATGACA ACCATTCGTTATCGACAATCGGACGAGAATATAAAGATGATGACAGAGTA CCGTTGCACACTTATCTCGATCTTGGTCTCGATGGATTAATAAGAGAGAC AAATTTCACTCGTGAAGAAATACAGAGAATGTATCGTGGCTTCAAGCAGg aaTGCCCAAGAGGTCTTCTGGACGAGGAGACATTTCTGGCCATTTTGAAC ATGCTTTTCCCGGGAGGTGATCCAACGTTATATTGTAGTCGAATATTCAA CACTTTCGACCGAAGAAAGACTGGAAAGCTAACTTTTGAGGTAAGCCACC GTCATTACGTATATACAGTgggcgctctctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00062553-exon-scaffold_369-1491911889:99277..99393 | TCONS_00062553-exon-scaffold_369-1491911889:99277..99393 | Clytia hemisphaerica | exon |
TCONS_00062553-exon-scaffold_369-1510915933:99277..99393 | TCONS_00062553-exon-scaffold_369-1510915933:99277..99393 | Clytia hemisphaerica | exon |
TCONS_00062553-exon-scaffold_369-1575043694:99277..99393 | TCONS_00062553-exon-scaffold_369-1575043694:99277..99393 | Clytia hemisphaerica | exon |
TCONS_00062553-exon-scaffold_369-1491911889:100482..100553 | TCONS_00062553-exon-scaffold_369-1491911889:100482..100553 | Clytia hemisphaerica | exon |
TCONS_00062553-exon-scaffold_369-1510915933:100482..100553 | TCONS_00062553-exon-scaffold_369-1510915933:100482..100553 | Clytia hemisphaerica | exon |
TCONS_00062553-exon-scaffold_369-1575043694:100482..100553 | TCONS_00062553-exon-scaffold_369-1575043694:100482..100553 | Clytia hemisphaerica | exon |
TCONS_00062553-exon-scaffold_369-1491911889:101279..101391 | TCONS_00062553-exon-scaffold_369-1491911889:101279..101391 | Clytia hemisphaerica | exon |
TCONS_00062553-exon-scaffold_369-1510915933:101279..101391 | TCONS_00062553-exon-scaffold_369-1510915933:101279..101391 | Clytia hemisphaerica | exon |
TCONS_00062553-exon-scaffold_369-1575043694:101279..101391 | TCONS_00062553-exon-scaffold_369-1575043694:101279..101391 | Clytia hemisphaerica | exon |
TCONS_00062553-exon-scaffold_369-1491911889:101596..101842 | TCONS_00062553-exon-scaffold_369-1491911889:101596..101842 | Clytia hemisphaerica | exon |
TCONS_00062553-exon-scaffold_369-1510915933:101596..101842 | TCONS_00062553-exon-scaffold_369-1510915933:101596..101842 | Clytia hemisphaerica | exon |
TCONS_00062553-exon-scaffold_369-1575043694:101596..101842 | TCONS_00062553-exon-scaffold_369-1575043694:101596..101842 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_369 | supercontig | scaffold_369:99277..101842 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR011992 | EF-hand-dom_pair |
Blast
BLAST of TCONS_00062553 vs. Swiss-Prot (Human)
Match: CSEN (Calsenilin OS=Homo sapiens GN=KCNIP3 PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.238e-18 Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 3
Query: 228 GLDGLIRETNFTREEIQRMYRGFKQECPRGLLDEETFLAILNMLFPGGDPTLYCSRIFNTFDRRKTGKLTFE 443
GLD L +T FT++E+Q +YRGFK ECP GL+DE+TF I FP GD T Y +FN FD G + FE
Sbjct: 78 GLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYAQFFPQGDATTYAHFLFNAFDADGNGAIHFE 149
The following BLAST results are available for this feature:
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