TCONS_00062553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062553
Unique NameTCONS_00062553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length549

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062553 ID=TCONS_00062553|Name=TCONS_00062553|organism=Clytia hemisphaerica|type=transcript|length=549bp
CAGCAATCACGCAAATTATTCGTACCGTGAGTCGTGATTCGACAGGTTCA
AGTGGTTCCCGGAACTCAATGAACTTCTCTGGACGTTTTCAAAACCTCGT
CACTCTGATGGCACATCCTTTCGCGTTGAAGTATGCTGGTTCTGAAGATG
ACAACCATTCGTTATCGACAATCGGACGAGAATATAAAGATGATGACAGA
GTACCGTTGCACACTTATCTCGATCTTGGTCTCGATGGATTAATAAGAGA
GACAAATTTCACTCGTGAAGAAATACAGAGAATGTATCGTGGCTTCAAGC
AGgaaTGCCCAAGAGGTCTTCTGGACGAGGAGACATTTCTGGCCATTTTG
AACATGCTTTTCCCGGGAGGTGATCCAACGTTATATTGTAGTCGAATATT
CAACACTTTCGACCGAAGAAAGACTGGAAAGCTAACTTTTGAGGTAAGCC
ACCGTCATTACGTATATACAGTgggcgctctctaattcgacgttctacta
ttcgataagctcccgttttcgatcaaattgaaagtcaccATCAAATTTC
Run BLAST on NCBI

protein sequence of TCONS_00062553-protein

>TCONS_00062553-protein ID=TCONS_00062553-protein|Name=TCONS_00062553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
AITQIIRTVSRDSTGSSGSRNSMNFSGRFQNLVTLMAHPFALKYAGSEDD
NHSLSTIGREYKDDDRVPLHTYLDLGLDGLIRETNFTREEIQRMYRGFKQ
ECPRGLLDEETFLAILNMLFPGGDPTLYCSRIFNTFDRRKTGKLTFEVSH
RHYVYTVGAL
Run BLAST on NCBI

transcript from alignment at scaffold_369:99277..101842+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062553 ID=TCONS_00062553|Name=TCONS_00062553|organism=Clytia hemisphaerica|type=transcript|length=2566bp|location=Sequence derived from alignment at scaffold_369:99277..101842+ (Clytia hemisphaerica)
CAGCAATCACGCAAATTATTCGTACCGTGAGTCGTGATTCGACAGGTTCA
AGTGGTTCCCGGAACTCAATGAACTTCTCTGGACGTTTTCAAAACCTCGT
CACTCTGATGGCACATCGTAAGTGTTTGAGATTCAAAGTACAGTTGTTCA
AAGACAGTGGTATATTAGCTCTTCACGATATGTTTAAGTCATTTTCTTTA
ACGGAAACACCGGAAAAAACCGGGACTTGATCACTGGCTGTTATTAAAAT
AGAAACATAGCATGCAAAGTCCGGCTTTATCAGGGTGctttcgttggaaa
gatattaccTCATTTTGACTTACGAATGTCATAGTTTACTAGTTTCTTCT
TGAGAAGTGTTAATTATCAGTGATAGGTCATAAAGTTACTAGGCTATGTT
GAGAATTTTACAGTGTGtggaattttgaatgaaaaaaaaacaattttgag
gGAGAGATctcgattttttttaattgtttgtaATATTCTCATCACCCTTG
TAGATGCTTTACGACCACTCCCTTACCTCGCTATTAAGTTTAGATTTATA
TAAAGTTTATACAGTACAGACAAGAAATTGACCTCTTGAAAGCTTCGATT
TACTTGACATAAAAAAGTCCCGAAAAAGTTCGAGTTGTTTGTGACACAGG
AGTGTTATTATGCCCAGACcctaaagaatttttttcgaaattgagAAAGC
TTGTCGCTATGAAGTACAGCTGAAGTTAGAAACCAAAAATCCTCTTTACC
TAAATCTGTTTAATTTTTTCTCCGGAACCCTTAAACCTTTGTTTAGGccc
ttttggaaatttttttccagaaatttGGGGTTTGAAAAACCTTTTGGAAA
CAGGATTCGACACCGTAAGGTGCTTTGAtaagatgaaaaagaaacacTGC
AAATCTGGAaaggatttttgaaatattatggtttgaaaaatatttcgagt
gaaaaatgttgaaagtcGCCTTAATCTCCTGTTGTTTTGTAGCATATTGC
TGTTATGAAATATTCACTTAAATCCTCCACAAAACTTATTAgtttatttt
caaagtttttccaCATTCCTCTTGGACACAAAGGGAATGATTACAGTTTT
CTAATGTTCCTTGTTATTCCGACGAAGGACCTCGTTAGTGTTGTAGTCTG
TCTGCAGACTTTTTCTCAAGTGTTGTTAATAGACTTGATATGGCCTGTTT
TTCAGCTTTCGCGTTGAAGTATGCTGGTTCTGAAGATGACAACCATTCGT
TATCGACAATCGGACGAGAATATAAAGGTAAGATATTTTGATACTACACC
Ctcttctcatagacccactgggaccccttccctctgaaaaaattggccaa
cATATCGTCCCCGCTGAAAACTATACTCCAATTTTTTGTCGCCACTGAAA
TAATCAAatgaaccaatcctcactgcaaatttcttttgctttttatccat
cccactgaattttctgacttgataaaacaatggaatttaaatccccagcc
ataaaaatatgttaataTAAATCCCTATCATGTTTCAGTCCgaaaaaaat
tccaccggggccGTAAGAAGGGGATAGGATACTATATTTCGTTCTACCCA
TTGCGTTTTAAACGACTGTTCATTCATATGTTGTTAAACCTTAGATCAAT
GCTACTAAAGTGTATTTGCTAAGGGTGCAATATTATTGTTAAAATATGGA
AATcggaattcgaatttttttgataatggAGCAAGTTGGATTCTCTAACC
ATGCCCCATTCTATTTTTCTTAAACgcttcgaaaaaaaagtttagaaatt
acaCGAAGGGGCGGAACCTCGTGCGTTCTTCCgttattttcatctttatt
ttcttgAGATGCCCAAAATTGAATCCGGCATGACTGTTTTACgttataaa
ttttttgatttgattagtTTCCATTCCCCTTTCTTGATGCTTCAGATGAT
GACAGAGTACCATTGCACACTTATCTCGATCTTGNCTTTCTTGACGCTTC
AGATGATGACAGAGTACCGTTGCACACTTATCTCGATCTTGGTCTCGATG
GATTAATAAGAGAGACAAATTTCACTCGTGAAGAAATACAGAGAATGTAT
CGTGGCTTCAAGCAGGTAGActtattaaataataaagtttcTCTCAAAAC
TGAGTATAGTAGTCTTTTATTCCGATATGCATGTTTTATTGGTAGTCGAA
GCATTTGTTGAAAGAatggaggttcgagttaaagagacttcaCTGTATTT
GATCTTAAAGCCGAACTGAGAGCTCTCTGAAAAATTTAGTTTGATTaccg
ataattttttttttctcaggaaTGCCCAAGAGGTCTTCTGGACGAGGAGA
CATTTCTGGCCATTTTGAACATGCTTTTCCCGGGAGGTGATCCAACGTTA
TATTGTAGTCGAATATTCAACACTTTCGACCGAAGAAAGACTGGAAAGCT
AACTTTTGAGGTAAGCCACCGTCATTACGTATATACAGTgggcgctctct
aattcgacgttctactattcgataagctcccgttttcgatcaaattgaaa
gtcaccATCAAATTTC

Coding sequence (CDS) from alignment at scaffold_369:99277..101842+

>TCONS_00062553 ID=TCONS_00062553|Name=TCONS_00062553|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_369:99277..101842+ (Clytia hemisphaerica)
GCAATCACGCAAATTATTCGTACCGTGAGTCGTGATTCGACAGGTTCAAG
TGGTTCCCGGAACTCAATGAACTTCTCTGGACGTTTTCAAAACCTCGTCA
CTCTGATGGCACATCCTTTCGCGTTGAAGTATGCTGGTTCTGAAGATGAC
AACCATTCGTTATCGACAATCGGACGAGAATATAAAGATGATGACAGAGT
ACCGTTGCACACTTATCTCGATCTTGGTCTCGATGGATTAATAAGAGAGA
CAAATTTCACTCGTGAAGAAATACAGAGAATGTATCGTGGCTTCAAGCAG
gaaTGCCCAAGAGGTCTTCTGGACGAGGAGACATTTCTGGCCATTTTGAA
CATGCTTTTCCCGGGAGGTGATCCAACGTTATATTGTAGTCGAATATTCA
ACACTTTCGACCGAAGAAAGACTGGAAAGCTAACTTTTGAGGTAAGCCAC
CGTCATTACGTATATACAGTgggcgctctctaaGCAATCACGCAAATTAT
TCGTACCGTGAGTCGTGATTCGACAGGTTCAAGTGGTTCCCGGAACTCAA
TGAACTTCTCTGGACGTTTTCAAAACCTCGTCACTCTGATGGCACATCCT
TTCGCGTTGAAGTATGCTGGTTCTGAAGATGACAACCATTCGTTATCGAC
AATCGGACGAGAATATAAAGATGATGACAGAGTACCGTTGCACACTTATC
TCGATCTTGGTCTCGATGGATTAATAAGAGAGACAAATTTCACTCGTGAA
GAAATACAGAGAATGTATCGTGGCTTCAAGCAGgaaTGCCCAAGAGGTCT
TCTGGACGAGGAGACATTTCTGGCCATTTTGAACATGCTTTTCCCGGGAG
GTGATCCAACGTTATATTGTAGTCGAATATTCAACACTTTCGACCGAAGA
AAGACTGGAAAGCTAACTTTTGAGGTAAGCCACCGTCATTACGTATATAC
AGTgggcgctctctaaGCAATCACGCAAATTATTCGTACCGTGAGTCGTG
ATTCGACAGGTTCAAGTGGTTCCCGGAACTCAATGAACTTCTCTGGACGT
TTTCAAAACCTCGTCACTCTGATGGCACATCCTTTCGCGTTGAAGTATGC
TGGTTCTGAAGATGACAACCATTCGTTATCGACAATCGGACGAGAATATA
AAGATGATGACAGAGTACCGTTGCACACTTATCTCGATCTTGGTCTCGAT
GGATTAATAAGAGAGACAAATTTCACTCGTGAAGAAATACAGAGAATGTA
TCGTGGCTTCAAGCAGgaaTGCCCAAGAGGTCTTCTGGACGAGGAGACAT
TTCTGGCCATTTTGAACATGCTTTTCCCGGGAGGTGATCCAACGTTATAT
TGTAGTCGAATATTCAACACTTTCGACCGAAGAAAGACTGGAAAGCTAAC
TTTTGAGGTAAGCCACCGTCATTACGTATATACAGTgggcgctctctaaG
CAATCACGCAAATTATTCGTACCGTGAGTCGTGATTCGACAGGTTCAAGT
GGTTCCCGGAACTCAATGAACTTCTCTGGACGTTTTCAAAACCTCGTCAC
TCTGATGGCACATCCTTTCGCGTTGAAGTATGCTGGTTCTGAAGATGACA
ACCATTCGTTATCGACAATCGGACGAGAATATAAAGATGATGACAGAGTA
CCGTTGCACACTTATCTCGATCTTGGTCTCGATGGATTAATAAGAGAGAC
AAATTTCACTCGTGAAGAAATACAGAGAATGTATCGTGGCTTCAAGCAGg
aaTGCCCAAGAGGTCTTCTGGACGAGGAGACATTTCTGGCCATTTTGAAC
ATGCTTTTCCCGGGAGGTGATCCAACGTTATATTGTAGTCGAATATTCAA
CACTTTCGACCGAAGAAAGACTGGAAAGCTAACTTTTGAGGTAAGCCACC
GTCATTACGTATATACAGTgggcgctctctaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039189XLOC_039189Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062553-exon-scaffold_369-1491911889:99277..99393TCONS_00062553-exon-scaffold_369-1491911889:99277..99393Clytia hemisphaericaexon
TCONS_00062553-exon-scaffold_369-1510915933:99277..99393TCONS_00062553-exon-scaffold_369-1510915933:99277..99393Clytia hemisphaericaexon
TCONS_00062553-exon-scaffold_369-1575043694:99277..99393TCONS_00062553-exon-scaffold_369-1575043694:99277..99393Clytia hemisphaericaexon
TCONS_00062553-exon-scaffold_369-1491911889:100482..100553TCONS_00062553-exon-scaffold_369-1491911889:100482..100553Clytia hemisphaericaexon
TCONS_00062553-exon-scaffold_369-1510915933:100482..100553TCONS_00062553-exon-scaffold_369-1510915933:100482..100553Clytia hemisphaericaexon
TCONS_00062553-exon-scaffold_369-1575043694:100482..100553TCONS_00062553-exon-scaffold_369-1575043694:100482..100553Clytia hemisphaericaexon
TCONS_00062553-exon-scaffold_369-1491911889:101279..101391TCONS_00062553-exon-scaffold_369-1491911889:101279..101391Clytia hemisphaericaexon
TCONS_00062553-exon-scaffold_369-1510915933:101279..101391TCONS_00062553-exon-scaffold_369-1510915933:101279..101391Clytia hemisphaericaexon
TCONS_00062553-exon-scaffold_369-1575043694:101279..101391TCONS_00062553-exon-scaffold_369-1575043694:101279..101391Clytia hemisphaericaexon
TCONS_00062553-exon-scaffold_369-1491911889:101596..101842TCONS_00062553-exon-scaffold_369-1491911889:101596..101842Clytia hemisphaericaexon
TCONS_00062553-exon-scaffold_369-1510915933:101596..101842TCONS_00062553-exon-scaffold_369-1510915933:101596..101842Clytia hemisphaericaexon
TCONS_00062553-exon-scaffold_369-1575043694:101596..101842TCONS_00062553-exon-scaffold_369-1575043694:101596..101842Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062553-proteinTCONS_00062553-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_369supercontigscaffold_369:99277..101842 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.925944	2.39219	1.55675	2.62474	1.75819	1.19666	0	0	0	1.95208	3.10925	0.486711	0.635857	0	1.66093	5.3686e-05	2.58081	1.08104	1.43222	0	2.94815	0.351362	1.19988	0.434201	0	0.347449	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011992EF-hand-dom_pair
Blast
[Close]
BLAST of TCONS_00062553 vs. Swiss-Prot (Human)
Match: CSEN (Calsenilin OS=Homo sapiens GN=KCNIP3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.238e-18
Identity = 37/72 (51.39%), Postives = 46/72 (63.89%), Query Frame = 3 
Query:  228 GLDGLIRETNFTREEIQRMYRGFKQECPRGLLDEETFLAILNMLFPGGDPTLYCSRIFNTFDRRKTGKLTFE 443
            GLD L  +T FT++E+Q +YRGFK ECP GL+DE+TF  I    FP GD T Y   +FN FD    G + FE
Sbjct:   78 GLDQLQAQTKFTKKELQSLYRGFKNECPTGLVDEDTFKLIYAQFFPQGDATTYAHFLFNAFDADGNGAIHFE 149
The following BLAST results are available for this feature:
BLAST of TCONS_00062553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CSEN1.238e-1851.39Calsenilin OS=Homo sapiens GN=KCNIP3 PE=1 SV=1[more]
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