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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062519 ID=TCONS_00062519|Name=TCONS_00062519|organism=Clytia hemisphaerica|type=transcript|length=921bp
atactctctatcTATCAACTATAACTTAATTTACGAGATCGTTTGAATAC
TGATTTCTTGCAGTTTTTAAGTTGATCTTCAGTCAATGGATAAGTAGCTT
CATTTCGAACCATACTTCCTTCATAAAAACTTAAGCCTCCTTTACGATCT
ATTTTGATCGCTCGTACTAAAGTTTGTTCACGCATACCATGCCTAAGACA
GATCTCTCCAATCACACATAGTGCACGTGCGTCGTGACAATGAGAGATAA
GTATAACTTCAGGTGTTGGCATAGCAACAACATAATTTGTCGTTATTGGT
AACATGTTAAGTACTTCAGGTACTGCTagtaatgatgacgtcattgtttt
taattttgtacAGCAATATACCCCTGTGTAAGATTCCACAAACAAAGGCT
CTGATCGTTCAATAAGTGCTACCTTTTTCAAGAAGTTTTCTCGTGCAAAT
TtaatcaattctttttctgtAATCTGCCAGTGTTCTATATCCGCATTTGA
AATGTACCGGACATTGTCGTCTGTTTCGGAACATATAGCATAAATAGTAC
CTTGGTTTATATTCGACATATGTTTCGCCAGTAACGTGTATTTATTATCG
TTGTTACTCTGTAAACTATCTTTTGCTCGCTTGATCCAAGACCATTGTTT
CACTATAGGATAAATTGTACTTCGTATGTCGTTAAACTGAACGGCTCTTT
CCGTTGTTAATTTGAACGTAATTGGGATCTTTCCGTCTTCATCCTGGCTT
AATCGGCGAAACATTTGCATCGGACTGCGTCTTGGTGTgttcattttgtc
aaaattataaTGATAACTTGTCTCGTTTTTATTGTCTCTTGTAAACAAGT
AATAGTTGGTTTTTGGTAGGTGTAGTTCAAGTGATTTCAGATTTCCGTTT
TCCGATTTCCGATTTCGGTTT Run BLAST on NCBI protein sequence of TCONS_00062519-protein >TCONS_00062519-protein ID=TCONS_00062519-protein|Name=TCONS_00062519-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
NRNRKSENGNLKSLELHLPKTNYYLFTRDNKNETSYHYNFDKMNTPRRSP
MQMFRRLSQDEDGKIPITFKLTTERAVQFNDIRSTIYPIVKQWSWIKRAK
DSLQSNNDNKYTLLAKHMSNINQGTIYAICSETDDNVRYISNADIEHWQI
TEKELIKFARENFLKKVALIERSEPLFVESYTGVYCCTKLKTMTSSLLAV
PEVLNMLPITTNYVVAMPTPEVILISHCHDARALCVIGEICLRHGMREQT
LVRAIKIDRKGGLSFYEGSMVRNEATYPLTEDQLKNCKKSVFKRSRKLSY
S Run BLAST on NCBI transcript from alignment at scaffold_367:146940..147860 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062519 ID=TCONS_00062519|Name=TCONS_00062519|organism=Clytia hemisphaerica|type=transcript|length=921bp|location=Sequence derived from alignment at scaffold_367:146940..147860 (Clytia hemisphaerica)
AAACCGAAATCGGAAATCGGAAAACGGAAATCTGAAATCACTTGAACTAC
ACCTACCAAAAACCAACTATTACTTGTTTACAAGAGACAATAAAAACGAG
ACAAGTTATCAttataattttgacaaaatgaacACACCAAGACGCAGTCC
GATGCAAATGTTTCGCCGATTAAGCCAGGATGAAGACGGAAAGATCCCAA
TTACGTTCAAATTAACAACGGAAAGAGCCGTTCAGTTTAACGACATACGA
AGTACAATTTATCCTATAGTGAAACAATGGTCTTGGATCAAGCGAGCAAA
AGATAGTTTACAGAGTAACAACGATAATAAATACACGTTACTGGCGAAAC
ATATGTCGAATATAAACCAAGGTACTATTTATGCTATATGTTCCGAAACA
GACGACAATGTCCGGTACATTTCAAATGCGGATATAGAACACTGGCAGAT
TacagaaaaagaattgattaAATTTGCACGAGAAAACTTCTTGAAAAAGG
TAGCACTTATTGAACGATCAGAGCCTTTGTTTGTGGAATCTTACACAGGG
GTATATTGCTgtacaaaattaaaaacaatgacgtcatcattactAGCAGT
ACCTGAAGTACTTAACATGTTACCAATAACGACAAATTATGTTGTTGCTA
TGCCAACACCTGAAGTTATACTTATCTCTCATTGTCACGACGCACGTGCA
CTATGTGTGATTGGAGAGATCTGTCTTAGGCATGGTATGCGTGAACAAAC
TTTAGTACGAGCGATCAAAATAGATCGTAAAGGAGGCTTAAGTTTTTATG
AAGGAAGTATGGTTCGAAATGAAGCTACTTATCCATTGACTGAAGATCAA
CTTAAAAACTGCAAGAAATCAGTATTCAAACGATCTCGTAAATTAAGTTA
TAGTTGATAgatagagagtat Coding sequence (CDS) from alignment at scaffold_367:146940..147860 >TCONS_00062519 ID=TCONS_00062519|Name=TCONS_00062519|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_367:146940..147860 (Clytia hemisphaerica)
AACCGAAATCGGAAATCGGAAAACGGAAATCTGAAATCACTTGAACTACA
CCTACCAAAAACCAACTATTACTTGTTTACAAGAGACAATAAAAACGAGA
CAAGTTATCAttataattttgacaaaatgaacACACCAAGACGCAGTCCG
ATGCAAATGTTTCGCCGATTAAGCCAGGATGAAGACGGAAAGATCCCAAT
TACGTTCAAATTAACAACGGAAAGAGCCGTTCAGTTTAACGACATACGAA
GTACAATTTATCCTATAGTGAAACAATGGTCTTGGATCAAGCGAGCAAAA
GATAGTTTACAGAGTAACAACGATAATAAATACACGTTACTGGCGAAACA
TATGTCGAATATAAACCAAGGTACTATTTATGCTATATGTTCCGAAACAG
ACGACAATGTCCGGTACATTTCAAATGCGGATATAGAACACTGGCAGATT
acagaaaaagaattgattaAATTTGCACGAGAAAACTTCTTGAAAAAGGT
AGCACTTATTGAACGATCAGAGCCTTTGTTTGTGGAATCTTACACAGGGG
TATATTGCTgtacaaaattaaaaacaatgacgtcatcattactAGCAGTA
CCTGAAGTACTTAACATGTTACCAATAACGACAAATTATGTTGTTGCTAT
GCCAACACCTGAAGTTATACTTATCTCTCATTGTCACGACGCACGTGCAC
TATGTGTGATTGGAGAGATCTGTCTTAGGCATGGTATGCGTGAACAAACT
TTAGTACGAGCGATCAAAATAGATCGTAAAGGAGGCTTAAGTTTTTATGA
AGGAAGTATGGTTCGAAATGAAGCTACTTATCCATTGACTGAAGATCAAC
TTAAAAACTGCAAGAAATCAGTATTCAAACGATCTCGTAAATTAAGTTAT
AGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062519-exon-scaffold_367-1491911889:146940..147860 | TCONS_00062519-exon-scaffold_367-1491911889:146940..147860 | Clytia hemisphaerica | exon |
| TCONS_00062519-exon-scaffold_367-1510915933:146940..147860 | TCONS_00062519-exon-scaffold_367-1510915933:146940..147860 | Clytia hemisphaerica | exon |
| TCONS_00062519-exon-scaffold_367-1575043694:146940..147860 | TCONS_00062519-exon-scaffold_367-1575043694:146940..147860 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_367 | supercontig | scaffold_367:146940..147860 . |
Blast
The following BLAST results are available for this feature:
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