TCONS_00062491 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062491
Unique NameTCONS_00062491
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length548

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062491 ID=TCONS_00062491|Name=TCONS_00062491|organism=Clytia hemisphaerica|type=transcript|length=548bp
CGgtgcggaaaaaaaattagaaaacgaaagtagttgaaacttctagaaca
ttctcgaaGATTCTAAAATATGAACTCACTCgctaaaatgaaatttaatg
ATTCCACTCCGCAAGTGCTTAGGTAGGTGAAACCAAGCATTCGTAAACAT
CGctagtttttttaaatggcggaTTCGATCATGCTGTCAGACTTGCTCTG
GATTGttgtatttttatcatgtttttgatgtttttagagtacttaaagag
gtttatatttctttacaaTAGGATAGTATTTtgtgtttgtgtagttagta
atgcaccaataaagtgaTAGGAATCTTACAATTAGAGTTGCTCTTGAACA
TCACTACACACAACAACAATAATACAGACAACACAGACAACAGACaggta
tgatcttcatttttacaagtagaattatttgttgatatttgattaaGTTG
TGTTGTAAGACAGATTATCATTTATTAAGTATTATCATTTACTAAGTATT
TCACAGAAGAATTTATAGCAGGGGGTGTCAATCTATAAGTGCTAGAGA
Run BLAST on NCBI

transcript from alignment at scaffold_365:179813..180360

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062491 ID=TCONS_00062491|Name=TCONS_00062491|organism=Clytia hemisphaerica|type=transcript|length=548bp|location=Sequence derived from alignment at scaffold_365:179813..180360 (Clytia hemisphaerica)
TCTCTAGCACTTATAGATTGACACCCCCTGCTATAAATTCTTCTGTGAAA
TACTTAGTAAATGATAATACTTAATAAATGATAATCTGTCTTACAACACA
ACttaatcaaatatcaacaaataattctacttgtaaaaatgaagatcata
cctGTCTGTTGTCTGTGTTGTCTGTATTATTGTTGTTGTGTGTAGTGATG
TTCAAGAGCAACTCTAATTGTAAGATTCCTAtcactttattggtgcatta
ctaactacacaaacacaAAATACTATCCTAttgtaaagaaatataaacct
ctttaagtactctaaaaacatcaaaaacatgataaaaatacaaCAATCCA
GAGCAAGTCTGACAGCATGATCGAAtccgccatttaaaaaaactagCGAT
GTTTACGAATGCTTGGTTTCACCTACCTAAGCACTTGCGGAGTGGAATca
ttaaatttcattttagcGAGTGAGTTCATATTTTAGAATCttcgagaatg
ttctagaagtttcaactactttcgttttctaattttttttccgcacCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039156XLOC_039156Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062491-exon-scaffold_365-1491911889:179813..180360TCONS_00062491-exon-scaffold_365-1491911889:179813..180360Clytia hemisphaericaexon
TCONS_00062491-exon-scaffold_365-1510915933:179813..180360TCONS_00062491-exon-scaffold_365-1510915933:179813..180360Clytia hemisphaericaexon
TCONS_00062491-exon-scaffold_365-1575043694:179813..180360TCONS_00062491-exon-scaffold_365-1575043694:179813..180360Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_365supercontigscaffold_365:179813..180360 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.22444	0.803193	1.40998	1.83381	1.15292	0.629346	0.420513	1.01243	0.435477	0.546188	0.909967	0.8973	0.988372	1.15652	1.02415	1.53389	0.83938	1.8988	2.98237	1.50204	2.16815	2.57433	0.396672	1.15392	0.561812	0.962402	2.0169	2.61333	0.840799	0.716856
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062491 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top