TCONS_00062488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062488
Unique NameTCONS_00062488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1013

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062488 ID=TCONS_00062488|Name=TCONS_00062488|organism=Clytia hemisphaerica|type=transcript|length=1013bp
agaacatcgtaagaacatttaagtctgaaaatttcaaaaatgaaagatat
ACTTAGTTTAGTCTAAAACGTagcttttttttaaaccaaacgtttatctt
tttctttgagTGTGAAGGAAGAAGATTGTctatttttggcctttttttcg
ttttattttatCTGAAGTTGTCAGCTTGTCATCGACAAATTTGCATTGTT
GTTGCTGGTTGTTGTCAATGTTACCAAATCCTACTTTACTGAAACTTTGA
ACCAAcatctttcttttttaatatatttagATGGATATTAATTtattaaa
agaaatcaaagcaGACCGTAAGCATAATCGTTGGCAGCCATTATGTGACG
AAGCACGACAAAATTTGATCACAGAGagaagaaaagataaaaagttgGAA
TTCAAATGTCTTTCTCCTGTAACAGACATTGAAAGGATATTTGACAAAAA
CAAGGATCACCAAAGCCTGGAAAATGTTCACCAAAGCCTCAAAAAGTTGG
CCAATGTCTACCTTTGTTTACATCGGTACGCCATCAACCTAATCAACAAA
AGGAAGGAGGGANCTGAAAGGATATTTGACAAAAACAAGGATCACCAAAA
CCTGGAAAATGTTCACCAAAGCCTCAAAAAGTTGGCCAATGTCTACCTTT
GTTTACATCGGTACGCCATCAACCTAATCAACAAAAGGAAGNtgacactt
ttttcaaaagaaaatcgaaaatactaaaaaatattcccataaagtttgac
ttcatgaaaagaaaactggctATGGTCAGGTAACTTTATTCTAGATTTAA
AGGACTCAACGtgagctttccaaaaaaccaaaagttttctttatttcagt
tagtcaataaaaaattagaaaatgaaaccttgttggttgcggacataact
ttttgttaAATTTGGTTTAAAATAAGCAATAAACATTAAATTGAGTTTTT
ATTTGGCTTTTAATACTTTGCTGTACTTGAACCAAAACTTAATCATTGAA
GTTTGTTGTCTTG
Run BLAST on NCBI

protein sequence of TCONS_00062488-protein

>TCONS_00062488-protein ID=TCONS_00062488-protein|Name=TCONS_00062488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MDINLLKEIKADRKHNRWQPLCDEARQNLITERRKDKKLEFKCLSPVTDI
ERIFDKNKDHQSLENVHQSLKKLANVYLCLHRYAINLINKRKEGXERIFD
KNKDHQNLENVHQSLKKLANVYLCLHRYAINLINKRKXTLFSKENRKY
Run BLAST on NCBI

transcript from alignment at scaffold_365:163807..164819

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062488 ID=TCONS_00062488|Name=TCONS_00062488|organism=Clytia hemisphaerica|type=transcript|length=1013bp|location=Sequence derived from alignment at scaffold_365:163807..164819 (Clytia hemisphaerica)
CAAGACAACAAACTTCAATGATTAAGTTTTGGTTCAAGTACAGCAAAGTA
TTAAAAGCCAAATAAAAACTCAATTTAATGTTTATTGCTTATTTTAAACC
AAATTtaacaaaaagttatgtccgcaaccaacaaggtttcattttctaat
tttttattgactaactgaaataaagaaaacttttggttttttggaaagct
caCGTTGAGTCCTTTAAATCTAGAATAAAGTTACCTGACCATagccagtt
ttcttttcatgaagtcaaactttatgggaatattttttagtattttcgat
tttcttttgaaaaaagtgtcaNCTTCCTTTTGTTGATTAGGTTGATGGCG
TACCGATGTAAACAAAGGTAGACATTGGCCAACTTTTTGAGGCTTTGGTG
AACATTTTCCAGGTTTTGGTGATCCTTGTTTTTGTCAAATATCCTTTCAG
NTCCCTCCTTCCTTTTGTTGATTAGGTTGATGGCGTACCGATGTAAACAA
AGGTAGACATTGGCCAACTTTTTGAGGCTTTGGTGAACATTTTCCAGGCT
TTGGTGATCCTTGTTTTTGTCAAATATCCTTTCAATGTCTGTTACAGGAG
AAAGACATTTGAATTCcaactttttatcttttcttctCTCTGTGATCAAA
TTTTGTCGTGCTTCGTCACATAATGGCTGCCAACGATTATGCTTACGGTC
tgctttgatttcttttaataAATTAATATCCATctaaatatattaaaaaa
gaaagatgTTGGTTCAAAGTTTCAGTAAAGTAGGATTTGGTAACATTGAC
AACAACCAGCAACAACAATGCAAATTTGTCGATGACAAGCTGACAACTTC
AGataaaataaaacgaaaaaaaggccaaaaatagACAATCTTCTTCCTTC
ACActcaaagaaaaagataaacgtttggtttaaaaaaaagctACGTTTTA
GACTAAACTAAGTatatctttcatttttgaaattttcagacttaaatgtt
cttacgatgttct

Coding sequence (CDS) from alignment at scaffold_365:163807..164819

>TCONS_00062488 ID=TCONS_00062488|Name=TCONS_00062488|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_365:163807..164819 (Clytia hemisphaerica)
ttagtattttcgattttcttttgaaaaaagtgtcaNCTTCCTTTTGTTGA
TTAGGTTGATGGCGTACCGATGTAAACAAAGGTAGACATTGGCCAACTTT
TTGAGGCTTTGGTGAACATTTTCCAGGTTTTGGTGATCCTTGTTTTTGTC
AAATATCCTTTCAGNTCCCTCCTTCCTTTTGTTGATTAGGTTGATGGCGT
ACCGATGTAAACAAAGGTAGACATTGGCCAACTTTTTGAGGCTTTGGTGA
ACATTTTCCAGGCTTTGGTGATCCTTGTTTTTGTCAAATATCCTTTCAAT
GTCTGTTACAGGAGAAAGACATTTGAATTCcaactttttatcttttcttc
tCTCTGTGATCAAATTTTGTCGTGCTTCGTCACATAATGGCTGCCAACGA
TTATGCTTACGGTCtgctttgatttcttttaataAATTAATATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039153XLOC_039153Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062488-proteinTCONS_00062488-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062488-exon-scaffold_365-1491911889:163807..164819TCONS_00062488-exon-scaffold_365-1491911889:163807..164819Clytia hemisphaericaexon
TCONS_00062488-exon-scaffold_365-1510915933:163807..164819TCONS_00062488-exon-scaffold_365-1510915933:163807..164819Clytia hemisphaericaexon
TCONS_00062488-exon-scaffold_365-1575043694:163807..164819TCONS_00062488-exon-scaffold_365-1575043694:163807..164819Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_365supercontigscaffold_365:163807..164819 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.93917	9.11581	7.22345	7.8039	18.2687	13.2136	11.63	11.1534	9.22178	10.865	7.77886	7.28507	8.62688	7.33601	8.71902	8.14664	10.3021	9.81233	6.56705	9.07631	9.50983	10.9144	6.32058	7.80889	14.2604	14.3761	6.70178	5.86561	6.02014	4.62718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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