TCONS_00062484 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062484
Unique NameTCONS_00062484
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length307

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062484 ID=TCONS_00062484|Name=TCONS_00062484|organism=Clytia hemisphaerica|type=transcript|length=307bp
CATCTATGCTTAAAGAACCACAGAGACACTCGAATAGCAGAGTTATGGTC
TGTAGCCACCTCCCTCATCGCTTCCGGCATCCGTAACTGCCATCCTAGCA
CTACTGTTTCTATATACAACACAATTGTCATACCAAAACTTCTCTACAGC
CTTGAATTAGTTAAGAACTTACAAAATCAGAGATGGAGTACCTTGATTCT
CAGGCAAGGGCTTGTTTAAAATCTCTATTCAATGTATCGAAGAGAAGCAA
AAACGACATTCATCGACTGTACAGTATTCCCAATGTATGCAGCATTATCG
ATGAACG
Run BLAST on NCBI

transcript from alignment at scaffold_365:19409..19715

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062484 ID=TCONS_00062484|Name=TCONS_00062484|organism=Clytia hemisphaerica|type=transcript|length=307bp|location=Sequence derived from alignment at scaffold_365:19409..19715 (Clytia hemisphaerica)
CGTTCATCGATAATGCTGCATACATTGGGAATACTGTACAGTCGATGAAT
GTCGTTTTTGCTTCTCTTCGATACATTGAATAGAGATTTTAAACAAGCCC
TTGCCTGAGAATCAAGGTACTCCATCTCTGATTTTGTAAGTTCTTAACTA
ATTCAAGGCTGTAGAGAAGTTTTGGTATGACAATTGTGTTGTATATAGAA
ACAGTAGTGCTAGGATGGCAGTTACGGATGCCGGAAGCGATGAGGGAGGT
GGCTACAGACCATAACTCTGCTATTCGAGTGTCTCTGTGGTTCTTTAAGC
ATAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039149XLOC_039149Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062484-exon-scaffold_365-1491911889:19409..19715TCONS_00062484-exon-scaffold_365-1491911889:19409..19715Clytia hemisphaericaexon
TCONS_00062484-exon-scaffold_365-1510915933:19409..19715TCONS_00062484-exon-scaffold_365-1510915933:19409..19715Clytia hemisphaericaexon
TCONS_00062484-exon-scaffold_365-1575043694:19409..19715TCONS_00062484-exon-scaffold_365-1575043694:19409..19715Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_365supercontigscaffold_365:19409..19715 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.70247	2.13923	1.37569	1.51388	32.9145	24.4981	28.2792	31.0419	14.9548	24.351	8.90065	16.9628	10.6623	14.5627	5.77494	5.66023	9.23256	5.3079	12.0935	11.3859	3.33441	5.96364	5.97454	7.27638	7.51849	14.0843	8.45835	9.31022	5.12484	3.80845
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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