TCONS_00062474 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062474
Unique NameTCONS_00062474
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062474 ID=TCONS_00062474|Name=TCONS_00062474|organism=Clytia hemisphaerica|type=transcript|length=305bp
GATTTAGAAAAATGTGAGTGGAAGCAAATTCCTGATGCTCCTGAAGAAGT
CAATATTGTTATCATACCAAAGAATCAACAACAAACACCGGACTGTGAAC
GAGCAAAGCTGGAGGAGATTGAGAAGCTCAAACAATTCAATACCTTTTCA
TTAGTTAAAGACGAAGGTCAATTTCGTATATCAACAACATGGGTGTTATG
GGAGAAGAATGGTGGTGTCCGAGCACGTCTTGTTGCAAGAGGCTATGAGG
AATCATTCAAAGAAAGGACAGACTCACCCACAGTTTCAAAGAATGTCCTG
CGAAC
Run BLAST on NCBI

protein sequence of TCONS_00062474-protein

>TCONS_00062474-protein ID=TCONS_00062474-protein|Name=TCONS_00062474-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
DLEKCEWKQIPDAPEEVNIVIIPKNQQQTPDCERAKLEEIEKLKQFNTFS
LVKDEGQFRISTTWVLWEKNGGVRARLVARGYEESFKERTDSPTVSKNVL
R
Run BLAST on NCBI

transcript from alignment at scaffold_364:418879..419183

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062474 ID=TCONS_00062474|Name=TCONS_00062474|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at scaffold_364:418879..419183 (Clytia hemisphaerica)
GTTCGCAGGACATTCTTTGAAACTGTGGGTGAGTCTGTCCTTTCTTTGAA
TGATTCCTCATAGCCTCTTGCAACAAGACGTGCTCGGACACCACCATTCT
TCTCCCATAACACCCATGTTGTTGATATACGAAATTGACCTTCGTCTTTA
ACTAATGAAAAGGTATTGAATTGTTTGAGCTTCTCAATCTCCTCCAGCTT
TGCTCGTTCACAGTCCGGTGTTTGTTGTTGATTCTTTGGTATGATAACAA
TATTGACTTCTTCAGGAGCATCAGGAATTTGCTTCCACTCACATTTTTCT
AAATC

Coding sequence (CDS) from alignment at scaffold_364:418879..419183

>TCONS_00062474 ID=TCONS_00062474|Name=TCONS_00062474|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_364:418879..419183 (Clytia hemisphaerica)
TCGCAGGACATTCTTTGAAACTGTGGGTGAGTCTGTCCTTTCTTTGAATG
ATTCCTCATAGCCTCTTGCAACAAGACGTGCTCGGACACCACCATTCTTC
TCCCATAACACCCATGTTGTTGATATACGAAATTGACCTTCGTCTTTAAC
TAATGAAAAGGTATTGAATTGTTTGAGCTTCTCAATCTCCTCCAGCTTTG
CTCGTTCACAGTCCGGTGTTTGTTGTTGATTCTTTGGTATGATAACAATA
TTGACTTCTTCAGGAGCATCAGGAATTTGCTTCCACTCACATTTTTCTAA
ATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039141XLOC_039141Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062474-exon-scaffold_364-1491911889:418879..419183TCONS_00062474-exon-scaffold_364-1491911889:418879..419183Clytia hemisphaericaexon
TCONS_00062474-exon-scaffold_364-1510915933:418879..419183TCONS_00062474-exon-scaffold_364-1510915933:418879..419183Clytia hemisphaericaexon
TCONS_00062474-exon-scaffold_364-1575043694:418879..419183TCONS_00062474-exon-scaffold_364-1575043694:418879..419183Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062474-proteinTCONS_00062474-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:418879..419183 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.761014	2.33549	0	2.73838	4.29633	5.34591	7.50886	5.06619	0.0181835	1.66693	0	0.553822	0.925176	3.38608	1.76816	0	0.730895	0.438774	1.51378	1.48734	4.09887	0	0.591419	0.552451	2.6646	2.48658	1.59538	5.85942	1.09035	1.94534
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062474 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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