TCONS_00062470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062470
Unique NameTCONS_00062470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length508

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062470 ID=TCONS_00062470|Name=TCONS_00062470|organism=Clytia hemisphaerica|type=transcript|length=508bp
GTTTGATAAATATTTGAACGATGTGGATCCTAATGATATGTTTTATAACG
AAATCGAACATTGTgctgaaatatttttaagcACAAAGTTTTCAAATGAT
ATTGAATGGACAAAAAGGTTTCTTGAAATCTGTAAAGGAGTCAACGATTT
AGATTTCCTTTGTTACAGTATTCAAGCAACAATAGATCTTCTATCAGTca
atgaaaaatctgaaatatttttacaagtttttgtaaagatttttgaGGAT
TTCCTTAACAAATTAAGTACGATAGACAACGACTACTTAAGTGGGTTAAT
TTTTAGCCTATTTAGAGCCGATGGAGAGGTGTTATCGAATTTGTTGAAAG
ATTTGTTATCGAATGAAATAGTCATGGAAGCACATGAAGTTATAGAAGTA
ACATTGTCAGATCTTTGTTTGGAAGATAACCGCTATAAATTGAGAAAACT
GAAAGCCAACAAGAATTTTCAAACCCTCTTTTTGAATTACATGAAATTGC
TACCCGAC
Run BLAST on NCBI

protein sequence of TCONS_00062470-protein

>TCONS_00062470-protein ID=TCONS_00062470-protein|Name=TCONS_00062470-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
FDKYLNDVDPNDMFYNEIEHCAEIFLSTKFSNDIEWTKRFLEICKGVNDL
DFLCYSIQATIDLLSVNEKSEIFLQVFVKIFEDFLNKLSTIDNDYLSGLI
FSLFRADGEVLSNLLKDLLSNEIVMEAHEVIEVTLSDLCLEDNRYKLRKL
KANKNFQTLFLNYMKLLPD
Run BLAST on NCBI

transcript from alignment at scaffold_364:369889..370396

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062470 ID=TCONS_00062470|Name=TCONS_00062470|organism=Clytia hemisphaerica|type=transcript|length=508bp|location=Sequence derived from alignment at scaffold_364:369889..370396 (Clytia hemisphaerica)
GTCGGGTAGCAATTTCATGTAATTCAAAAAGAGGGTTTGAAAATTCTTGT
TGGCTTTCAGTTTTCTCAATTTATAGCGGTTATCTTCCAAACAAAGATCT
GACAATGTTACTTCTATAACTTCATGTGCTTCCATGACTATTTCATTCGA
TAACAAATCTTTCAACAAATTCGATAACACCTCTCCATCGGCTCTAAATA
GGCTAAAAATTAACCCACTTAAGTAGTCGTTGTCTATCGTACTTAATTTG
TTAAGGAAATCCtcaaaaatctttacaaaaacttgtaaaaatatttcaga
tttttcattgACTGATAGAAGATCTATTGTTGCTTGAATACTGTAACAAA
GGAAATCTAAATCGTTGACTCCTTTACAGATTTCAAGAAACCTTTTTGTC
CATTCAATATCATTTGAAAACTTTGTgcttaaaaatatttcagcACAATG
TTCGATTTCGTTATAAAACATATCATTAGGATCCACATCGTTCAAATATT
TATCAAAC

Coding sequence (CDS) from alignment at scaffold_364:369889..370396

>TCONS_00062470 ID=TCONS_00062470|Name=TCONS_00062470|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at scaffold_364:369889..370396 (Clytia hemisphaerica)
GTCGGGTAGCAATTTCATGTAATTCAAAAAGAGGGTTTGAAAATTCTTGT
TGGCTTTCAGTTTTCTCAATTTATAGCGGTTATCTTCCAAACAAAGATCT
GACAATGTTACTTCTATAACTTCATGTGCTTCCATGACTATTTCATTCGA
TAACAAATCTTTCAACAAATTCGATAACACCTCTCCATCGGCTCTAAATA
GGCTAAAAATTAACCCACTTAAGTAGTCGTTGTCTATCGTACTTAATTTG
TTAAGGAAATCCtcaaaaatctttacaaaaacttgtaaaaatatttcaga
tttttcattgACTGATAGAAGATCTATTGTTGCTTGAATACTGTAACAAA
GGAAATCTAAATCGTTGACTCCTTTACAGATTTCAAGAAACCTTTTTGTC
CATTCAATATCATTTGAAAACTTTGTgcttaaaaatatttcagcACAATG
TTCGATTTCGTTATAAAACATATCATTAGGATCCACATCGTTCAAATATT
TATCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039137XLOC_039137Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062470-exon-scaffold_364-1491911889:369889..370396TCONS_00062470-exon-scaffold_364-1491911889:369889..370396Clytia hemisphaericaexon
TCONS_00062470-exon-scaffold_364-1510915933:369889..370396TCONS_00062470-exon-scaffold_364-1510915933:369889..370396Clytia hemisphaericaexon
TCONS_00062470-exon-scaffold_364-1575043694:369889..370396TCONS_00062470-exon-scaffold_364-1575043694:369889..370396Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062470-proteinTCONS_00062470-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:369889..370396 .
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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