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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062466 ID=TCONS_00062466|Name=TCONS_00062466|organism=Clytia hemisphaerica|type=transcript|length=2888bp
AGGTTTTGCAAATTTGAAAGATTATTGTATATGGGGTGTGTATGAATATT
GGATCATCTTTAAACAATCAAAGTAAATATCTTTAAGTTAAAGTCCATTC
CTCTTCAAATGTTCTATGGATTGACAATAATTCAAAATCACTGATATAAT
CAATCCTTTATTTGCAAgataaaaattaattaaagCTGCAAAAAGATTTA
GGTATTCTATTAAATACTGTATGTTtagataaatttaaaaatattgaaaa
tatgaatTATTGTAATTATTAAATGTATATAATTATTAAATTTCAGTGAT
ATTACCAAAAGTTGTCACAACAAAAGCTTTGTCAGTGTCGCCATCTCTTT
TAACAAATGTGACAAATACTCTTTCTATGACAGGATAACTCGACAAATTA
ACATAATCCTTAATTTTGTAGTCTTTAAACGAGCAACCACATCGATTTCC
TCCATAGCGTCCAGGAGAATTTGTATGATGTCGAGATCTGGATTCTTTTT
TTTCGTTCTATTGAAAAATACAACATAATCCTTTCTTTCATCAACATATT
TAGTGTGGCGTTGATCACAAACATCCTTAAGATCATTATATGTTTGAGAG
TGATGCATAAACCAGTTCTTTGAGAAGTTTTCATCATAGAAACCAACAAA
GGACAACTTggtttcatcaaaattatacaCAAGATGATTGAACTCAACTG
TAGAACTGTTTTTACTCAAATCTCCATTTATTTTACCATTGAAGCATAGG
CAAGAGTCAGATCTCATAGATATGGATTGATTCAACTTGCGAACCAAGGC
AACACTGGGTAgataattatgtttttctgaaagTTGGAAATACTTAAAAC
GTTCTGGGGATGGAACAAAAATAGATGAACTTAACAAGctccaaaagtta
tatttatCAAAGTAGTCTTTTTTATTGTACACATGTTcaggtttttttaa
atctggATGTTTTTGTGTATGTTTACCAAAGAAAAGTCTGTTACGTTCAC
ATGTTTCATAACACTTATCCCAGTAGTTCAAAGAGTCCAACTCATCAAAG
TAAGAGAAGAAAGGATAACCAGAATCATCTTCTTCAGGGCAAGATACCTT
TGAGCGGATTTCAGATCTAACATCTACACCAATTTCAGCTATTCCTAAAT
ACTTTGCAAGGAAATGCCTATCCATGCTATAAAAGAAATCCTGCCATAGA
TCTTTACTTGAACTCTGTTGCTTGATCTTGAAAACCATTGTGTCTGGAAC
TCTCTCAGAATGAAATACAGAATATAAAATATCCTCAAGTGCTTCTTCAt
gtaattcttttgttttcttgttgaaACTTACAAGATAGTAATTCTTATCT
TTTAAATCGTTCCCAAGCAGTATGGTTGCATAGATTGACAAAACTTTTGC
GATCTTCGACTTATTTTCATAAACAAACTTCATGTCTGTAAATGAAAACT
TTCCATAAATCCCATTACTTTTTTCAACAGTTGGtatgattttctttaaa
agaatctttttcatgATAGGGTTTAGACCGGGGAAAGCTTTGCAAAGACT
TTTCATTGATTTAGGATCTTCAATATGCCTCATTATTTCGAACCAAATTT
CAACCGAAAAAATATTAAATGGGTCACTGTTTGCTTCATGATTCATAATT
TCTCCCAATATTGATACAGTCTCTGGACTACACGGAATAGGAGTTTGCGA
AAAGTCATAGTCTTCGAAATTAGTTTCAAGTGGTTGTATACCCCTTTGAT
AAGAGTAGAGAATAGATAGATATTTTTCATAGCATTTGATTGGGCCAGTA
TTATCAAAGTCTACATCAAATTCCTCATCAGATTCTAACTTCTTGGCTTC
ACAAAATAGTTCAAGACAACGGTTATAATCATGTTGTTCTGTCGGTGAAA
AAATTGGTAATAATGAACAAGTTTCCGTGCCAATACGTTCCATCATTATG
TGCATTTGAAGAACATAGCCACCAGTAGATGTGGAAATTGTGTTGTCAAG
GTTTTCATCTCTGAAATCATTAATAATTTGCTCATAAATTACATTGTGTT
TAAAAATAACAGCATCACCGCTATTTATATTTAGCCCAACATGATGATAA
CTTGTGTACAAATCACCATGAGAAATTATTTCATCTTGTAAACAAACACC
TTTAATTGATTGAGGTGCTTttggaatttgaaatataagTTCTGCTTTTT
TATTAACAAAGATTAGGCCTGTATGAATAGATCTTTGGTTTCTATTTGAT
ATAAATGGTGCCTCTCTACGTAACAAGGGAAAGTTCTTCCTAAATTTCCC
CTCAACTAGAGGGCTAACCAGTATTGCTTCGTCAACTCCTTTTACTATCC
ATTCTCCATCAGAAGTATCAAAACCAAACGGTTGTACATTATTTCTACTT
GTTGCCTCGAGAAACTTGGCAGAAAACTTGTTCCAAATAAAATCTGCAAA
TTTTTCGTCATAGATTACAAAATCATCTTCATTCCTGTGAGGTTGTGAAT
GATGAATATTCATTTGATCAATTTTGTTGAATATCTCTTCTTCTTGATTT
CTTAGCAATAAATTTGGGACACAGAAAACATCAGATGTCAAATTCCTAAA
TTCTTTAAATTCATTGCTGGAAGAACCTTCaagaaattgaaactctttac
CATCAATATGATTTGTTGGGCGTAATGGATTGCTTGCATGGAGATATGGT
TTTCCAATCATATCACTACTAACGGTACAATCCTTCCAACTcaacttttt
tacatttttatacatttttctttttcttggtaagtctaaaaacgagaaaa
aaaataaatttatagcaatatagtgatagacaaaaaaagaagaaatttat
gATAGTGGCAAAAGGCTTTAGGATTCTATTTGAGATTG Run BLAST on NCBI protein sequence of TCONS_00062466-protein >TCONS_00062466-protein ID=TCONS_00062466-protein|Name=TCONS_00062466-protein|organism=Clytia hemisphaerica|type=polypeptide|length=796bp
MYKNVKKLSWKDCTVSSDMIGKPYLHASNPLRPTNHIDGKEFQFLEGSSS
NEFKEFRNLTSDVFCVPNLLLRNQEEEIFNKIDQMNIHHSQPHRNEDDFV
IYDEKFADFIWNKFSAKFLEATSRNNVQPFGFDTSDGEWIVKGVDEAILV
SPLVEGKFRKNFPLLRREAPFISNRNQRSIHTGLIFVNKKAELIFQIPKA
PQSIKGVCLQDEIISHGDLYTSYHHVGLNINSGDAVIFKHNVIYEQIIND
FRDENLDNTISTSTGGYVLQMHIMMERIGTETCSLLPIFSPTEQHDYNRC
LELFCEAKKLESDEEFDVDFDNTGPIKCYEKYLSILYSYQRGIQPLETNF
EDYDFSQTPIPCSPETVSILGEIMNHEANSDPFNIFSVEIWFEIMRHIED
PKSMKSLCKAFPGLNPIMKKILLKKIIPTVEKSNGIYGKFSFTDMKFVYE
NKSKIAKVLSIYATILLGNDLKDKNYYLVSFNKKTKELHEEALEDILYSV
FHSERVPDTMVFKIKQQSSSKDLWQDFFYSMDRHFLAKYLGIAEIGVDVR
SEIRSKVSCPEEDDSGYPFFSYFDELDSLNYWDKCYETCERNRLFFGKHT
QKHPDLKKPEHVYNKKDYFDKYNFWSLLSSSIFVPSPERFKYFQLSEKHN
YLPSVALVRKLNQSISMRSDSCLCFNGKINGDLSKNSSTVEFNHLVYNFD
ETKLSFVGFYDENFSKNWFMHHSQTYNDLKDVCDQRHTKYVDERKDYVVF
FNRTKKKNPDLDIIQILLDAMEEIDVVARLKTTKLRIMLICRVILS Run BLAST on NCBI transcript from alignment at scaffold_364:360300..363187 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062466 ID=TCONS_00062466|Name=TCONS_00062466|organism=Clytia hemisphaerica|type=transcript|length=2888bp|location=Sequence derived from alignment at scaffold_364:360300..363187 (Clytia hemisphaerica)
CAATCTCAAATAGAATCCTAAAGCCTTTTGCCACTATcataaatttcttc
tttttttgtctatcactatattgctataaatttattttttttctcgtttt
tagacttaccaagaaaaagaaaaatgtataaaaatgtaaaaaagttgAGT
TGGAAGGATTGTACCGTTAGTAGTGATATGATTGGAAAACCATATCTCCA
TGCAAGCAATCCATTACGCCCAACAAATCATATTGATGgtaaagagtttc
aatttcttGAAGGTTCTTCCAGCAATGAATTTAAAGAATTTAGGAATTTG
ACATCTGATGTTTTCTGTGTCCCAAATTTATTGCTAAGAAATCAAGAAGA
AGAGATATTCAACAAAATTGATCAAATGAATATTCATCATTCACAACCTC
ACAGGAATGAAGATGATTTTGTAATCTATGACGAAAAATTTGCAGATTTT
ATTTGGAACAAGTTTTCTGCCAAGTTTCTCGAGGCAACAAGTAGAAATAA
TGTACAACCGTTTGGTTTTGATACTTCTGATGGAGAATGGATAGTAAAAG
GAGTTGACGAAGCAATACTGGTTAGCCCTCTAGTTGAGGGGAAATTTAGG
AAGAACTTTCCCTTGTTACGTAGAGAGGCACCATTTATATCAAATAGAAA
CCAAAGATCTATTCATACAGGCCTAATCTTTGTTAATAAAAAAGCAGAAc
ttatatttcaaattccaaAAGCACCTCAATCAATTAAAGGTGTTTGTTTA
CAAGATGAAATAATTTCTCATGGTGATTTGTACACAAGTTATCATCATGT
TGGGCTAAATATAAATAGCGGTGATGCTGTTATTTTTAAACACAATGTAA
TTTATGAGCAAATTATTAATGATTTCAGAGATGAAAACCTTGACAACACA
ATTTCCACATCTACTGGTGGCTATGTTCTTCAAATGCACATAATGATGGA
ACGTATTGGCACGGAAACTTGTTCATTATTACCAATTTTTTCACCGACAG
AACAACATGATTATAACCGTTGTCTTGAACTATTTTGTGAAGCCAAGAAG
TTAGAATCTGATGAGGAATTTGATGTAGACTTTGATAATACTGGCCCAAT
CAAATGCTATGAAAAATATCTATCTATTCTCTACTCTTATCAAAGGGGTA
TACAACCACTTGAAACTAATTTCGAAGACTATGACTTTTCGCAAACTCCT
ATTCCGTGTAGTCCAGAGACTGTATCAATATTGGGAGAAATTATGAATCA
TGAAGCAAACAGTGACCCATTTAATATTTTTTCGGTTGAAATTTGGTTCG
AAATAATGAGGCATATTGAAGATCCTAAATCAATGAAAAGTCTTTGCAAA
GCTTTCCCCGGTCTAAACCCTATcatgaaaaagattcttttaaagaaaat
cataCCAACTGTTGAAAAAAGTAATGGGATTTATGGAAAGTTTTCATTTA
CAGACATGAAGTTTGTTTATGAAAATAAGTCGAAGATCGCAAAAGTTTTG
TCAATCTATGCAACCATACTGCTTGGGAACGATTTAAAAGATAAGAATTA
CTATCTTGTAAGTttcaacaagaaaacaaaagaattacaTGAAGAAGCAC
TTGAGGATATTTTATATTCTGTATTTCATTCTGAGAGAGTTCCAGACACA
ATGGTTTTCAAGATCAAGCAACAGAGTTCAAGTAAAGATCTATGGCAGGA
TTTCTTTTATAGCATGGATAGGCATTTCCTTGCAAAGTATTTAGGAATAG
CTGAAATTGGTGTAGATGTTAGATCTGAAATCCGCTCAAAGGTATCTTGC
CCTGAAGAAGATGATTCTGGTTATCCTTTCTTCTCTTACTTTGATGAGTT
GGACTCTTTGAACTACTGGGATAAGTGTTATGAAACATGTGAACGTAACA
GACTTTTCTTTGGTAAACATACACAAAAACATccagatttaaaaaaacct
gAACATGTGTACAATAAAAAAGACTACTTTGataaatataacttttggag
CTTGTTAAGTTCATCTATTTTTGTTCCATCCCCAGAACGTTTTAAGTATT
TCCAActttcagaaaaacataattatcTACCCAGTGTTGCCTTGGTTCGC
AAGTTGAATCAATCCATATCTATGAGATCTGACTCTTGCCTATGCTTCAA
TGGTAAAATAAATGGAGATTTGAGTAAAAACAGTTCTACAGTTGAGTTCA
ATCATCTTGtgtataattttgatgaaaccAAGTTGTCCTTTGTTGGTTTC
TATGATGAAAACTTCTCAAAGAACTGGTTTATGCATCACTCTCAAACATA
TAATGATCTTAAGGATGTTTGTGATCAACGCCACACTAAATATGTTGATG
AAAGAAAGGATTATGTTGTATTTTTCAATAGAACGAAAAAAAAGAATCCA
GATCTCGACATCATACAAATTCTCCTGGACGCTATGGAGGAAATCGATGT
GGTTGCTCGTTTAAAGACTACAAAATTAAGGATTATGTTAATTTGTCGAG
TTATCCTGTCATAGAAAGAGTATTTGTCACATTTGTTAAAAGAGATGGCG
ACACTGACAAAGCTTTTGTTGTGACAACTTTTGGTAATATCACTGAAATT
TAATAATTATATACATTTAATAATTACAATAattcatattttcaatattt
ttaaatttatctaAACATACAGTATTTAATAGAATACCTAAATCTTTTTG
CAGctttaattaatttttatcTTGCAAATAAAGGATTGATTATATCAGTG
ATTTTGAATTATTGTCAATCCATAGAACATTTGAAGAGGAATGGACTTTA
ACTTAAAGATATTTACTTTGATTGTTTAAAGATGATCCAATATTCATACA
CACCCCATATACAATAATCTTTCAAATTTGCAAAACCT Coding sequence (CDS) from alignment at scaffold_364:360300..363187 >TCONS_00062466 ID=TCONS_00062466|Name=TCONS_00062466|organism=Clytia hemisphaerica|type=CDS|length=2391bp|location=Sequence derived from alignment at scaffold_364:360300..363187 (Clytia hemisphaerica)
atgtataaaaatgtaaaaaagttgAGTTGGAAGGATTGTACCGTTAGTAG
TGATATGATTGGAAAACCATATCTCCATGCAAGCAATCCATTACGCCCAA
CAAATCATATTGATGgtaaagagtttcaatttcttGAAGGTTCTTCCAGC
AATGAATTTAAAGAATTTAGGAATTTGACATCTGATGTTTTCTGTGTCCC
AAATTTATTGCTAAGAAATCAAGAAGAAGAGATATTCAACAAAATTGATC
AAATGAATATTCATCATTCACAACCTCACAGGAATGAAGATGATTTTGTA
ATCTATGACGAAAAATTTGCAGATTTTATTTGGAACAAGTTTTCTGCCAA
GTTTCTCGAGGCAACAAGTAGAAATAATGTACAACCGTTTGGTTTTGATA
CTTCTGATGGAGAATGGATAGTAAAAGGAGTTGACGAAGCAATACTGGTT
AGCCCTCTAGTTGAGGGGAAATTTAGGAAGAACTTTCCCTTGTTACGTAG
AGAGGCACCATTTATATCAAATAGAAACCAAAGATCTATTCATACAGGCC
TAATCTTTGTTAATAAAAAAGCAGAActtatatttcaaattccaaAAGCA
CCTCAATCAATTAAAGGTGTTTGTTTACAAGATGAAATAATTTCTCATGG
TGATTTGTACACAAGTTATCATCATGTTGGGCTAAATATAAATAGCGGTG
ATGCTGTTATTTTTAAACACAATGTAATTTATGAGCAAATTATTAATGAT
TTCAGAGATGAAAACCTTGACAACACAATTTCCACATCTACTGGTGGCTA
TGTTCTTCAAATGCACATAATGATGGAACGTATTGGCACGGAAACTTGTT
CATTATTACCAATTTTTTCACCGACAGAACAACATGATTATAACCGTTGT
CTTGAACTATTTTGTGAAGCCAAGAAGTTAGAATCTGATGAGGAATTTGA
TGTAGACTTTGATAATACTGGCCCAATCAAATGCTATGAAAAATATCTAT
CTATTCTCTACTCTTATCAAAGGGGTATACAACCACTTGAAACTAATTTC
GAAGACTATGACTTTTCGCAAACTCCTATTCCGTGTAGTCCAGAGACTGT
ATCAATATTGGGAGAAATTATGAATCATGAAGCAAACAGTGACCCATTTA
ATATTTTTTCGGTTGAAATTTGGTTCGAAATAATGAGGCATATTGAAGAT
CCTAAATCAATGAAAAGTCTTTGCAAAGCTTTCCCCGGTCTAAACCCTAT
catgaaaaagattcttttaaagaaaatcataCCAACTGTTGAAAAAAGTA
ATGGGATTTATGGAAAGTTTTCATTTACAGACATGAAGTTTGTTTATGAA
AATAAGTCGAAGATCGCAAAAGTTTTGTCAATCTATGCAACCATACTGCT
TGGGAACGATTTAAAAGATAAGAATTACTATCTTGTAAGTttcaacaaga
aaacaaaagaattacaTGAAGAAGCACTTGAGGATATTTTATATTCTGTA
TTTCATTCTGAGAGAGTTCCAGACACAATGGTTTTCAAGATCAAGCAACA
GAGTTCAAGTAAAGATCTATGGCAGGATTTCTTTTATAGCATGGATAGGC
ATTTCCTTGCAAAGTATTTAGGAATAGCTGAAATTGGTGTAGATGTTAGA
TCTGAAATCCGCTCAAAGGTATCTTGCCCTGAAGAAGATGATTCTGGTTA
TCCTTTCTTCTCTTACTTTGATGAGTTGGACTCTTTGAACTACTGGGATA
AGTGTTATGAAACATGTGAACGTAACAGACTTTTCTTTGGTAAACATACA
CAAAAACATccagatttaaaaaaacctgAACATGTGTACAATAAAAAAGA
CTACTTTGataaatataacttttggagCTTGTTAAGTTCATCTATTTTTG
TTCCATCCCCAGAACGTTTTAAGTATTTCCAActttcagaaaaacataat
tatcTACCCAGTGTTGCCTTGGTTCGCAAGTTGAATCAATCCATATCTAT
GAGATCTGACTCTTGCCTATGCTTCAATGGTAAAATAAATGGAGATTTGA
GTAAAAACAGTTCTACAGTTGAGTTCAATCATCTTGtgtataattttgat
gaaaccAAGTTGTCCTTTGTTGGTTTCTATGATGAAAACTTCTCAAAGAA
CTGGTTTATGCATCACTCTCAAACATATAATGATCTTAAGGATGTTTGTG
ATCAACGCCACACTAAATATGTTGATGAAAGAAAGGATTATGTTGTATTT
TTCAATAGAACGAAAAAAAAGAATCCAGATCTCGACATCATACAAATTCT
CCTGGACGCTATGGAGGAAATCGATGTGGTTGCTCGTTTAAAGACTACAA
AATTAAGGATTATGTTAATTTGTCGAGTTATCCTGTCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062466-exon-scaffold_364-1491911889:360300..363187 | TCONS_00062466-exon-scaffold_364-1491911889:360300..363187 | Clytia hemisphaerica | exon |
| TCONS_00062466-exon-scaffold_364-1510915933:360300..363187 | TCONS_00062466-exon-scaffold_364-1510915933:360300..363187 | Clytia hemisphaerica | exon |
| TCONS_00062466-exon-scaffold_364-1575043694:360300..363187 | TCONS_00062466-exon-scaffold_364-1575043694:360300..363187 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:360300..363187 . |
Blast
The following BLAST results are available for this feature:
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