TCONS_00062461 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062461
Unique NameTCONS_00062461
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length475

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062461 ID=TCONS_00062461|Name=TCONS_00062461|organism=Clytia hemisphaerica|type=transcript|length=475bp
cggttgaagaaaatttcgaattcaaatcgaaATTGTTTTCATTTCCTTGA
CGCGTGTAAGAAGCgaagcaaaaaagggctattAAAAAACATCTCTGTAt
tcgtacattttcctttgacccctcccccctgtacgcaagcatacgctttt
gagaagacccccctcccccttattgcgtacgtactatatgtggacggccc
catgggcttcaaaaattttgaatgttctcattaaaaataaaaacatataa
tTTGTTTAAATTCAGCGAACTCAGCCGACGGCATTATTTATTGAACcttt
ttgaaatgtttcaaaaaaagtcGTTCCCGGAAGACGCTTTTTAGAAGGAG
AGTACAATAACAAGGAAGACGGATGTGAGTCTTCATTTTCGAACATTTCT
GAGCATATTAAAAAGCCAAAAGGCGCATTAATGGATCATGGTCATTGTGT
GTGGTCATTTGAAAAACAATAGGGG
Run BLAST on NCBI

transcript from alignment at scaffold_364:286022..286496

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062461 ID=TCONS_00062461|Name=TCONS_00062461|organism=Clytia hemisphaerica|type=transcript|length=475bp|location=Sequence derived from alignment at scaffold_364:286022..286496 (Clytia hemisphaerica)
CCCCTATTGTTTTTCAAATGACCACACACAATGACCATGATCCATTAATG
CGCCTTTTGGCTTTTTAATATGCTCAGAAATGTTCGAAAATGAAGACTCA
CATCCGTCTTCCTTGTTATTGTACTCTCCTTCTAAAAAGCGTCTTCCGGG
AACgactttttttgaaacatttcaaaaagGTTCAATAAATAATGCCGTCG
GCTGAGTTCGCTGAATTTAAACAAattatatgtttttatttttaatgaga
acattcaaaatttttgaagcccatggggccgtccacatatagtacgtacg
caataagggggaggggggtcttctcaaaagcgtatgcttgcgtacagggg
ggaggggtcaaaggaaaatgtacgaaTACAGAGATGTTTTTTaatagccc
ttttttgcttcGCTTCTTACACGCGTCAAGGAAATGAAAACAATttcgat
ttgaattcgaaattttcttcaaccg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039128XLOC_039128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062461-exon-scaffold_364-1491911889:286022..286496TCONS_00062461-exon-scaffold_364-1491911889:286022..286496Clytia hemisphaericaexon
TCONS_00062461-exon-scaffold_364-1510915933:286022..286496TCONS_00062461-exon-scaffold_364-1510915933:286022..286496Clytia hemisphaericaexon
TCONS_00062461-exon-scaffold_364-1575043694:286022..286496TCONS_00062461-exon-scaffold_364-1575043694:286022..286496Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:286022..286496 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.139171	0	0.373683	0.34905	0.524715	0.658004	0.205685	1.55582	0.908076	0.16639	0.163751	1.06945	0.106699	0	0.177746	0	0.335346	0.11716	0	0	0.138586	0.222548	0	0	0.526034	0.298502	0.221647	0	0.159807	0.166526
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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