TCONS_00062459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062459
Unique NameTCONS_00062459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length427

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062459 ID=TCONS_00062459|Name=TCONS_00062459|organism=Clytia hemisphaerica|type=transcript|length=427bp
AAGAAACATAATCGTCTACCACCACATTCAAGGAAAGTTTATCTGTTCAT
TAATATTCAATACGTGACACAATCTGTAAAAGAGAATTCCACAGTGACGC
ATTGGTCCAGATAACATACTTCAGCAGTTTGCGTGAACTCTTGTTCATAA
CACATTTGCTCTGTTCTCATGGGATTCTGTGACAGACAAAGCTCAACTTT
ATATTTCCAACACATTTGGTATTCTTCAATCGGTAAAGAATAAGAATCGC
ATGTTGTGCTTGCTTCCTTCTTGCATTTCTTGACTCGAGCTCTTCTATCT
GCTCTCTGTTCTGCTGTACTTGTTGGAGATGCGGAGCTTATCAAATAACA
GCAAACCAGAATGAGCCACGAAATATGCATAATTTCAAGCTATAGTAAGC
CTCTTTTAGATGTGCGGCTGTTTGAAC
Run BLAST on NCBI

protein sequence of TCONS_00062459-protein

>TCONS_00062459-protein ID=TCONS_00062459-protein|Name=TCONS_00062459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MHISWLILVCCYLISSASPTSTAEQRADRRARVKKCKKEASTTCDSYSLP
IEEYQMCWKYKVELCLSQNPMRTEQMCYEQEFTQTAEVCYLDQCVTVEFS
FTDCVTY
Run BLAST on NCBI

transcript from alignment at scaffold_364:236980..237406

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062459 ID=TCONS_00062459|Name=TCONS_00062459|organism=Clytia hemisphaerica|type=transcript|length=427bp|location=Sequence derived from alignment at scaffold_364:236980..237406 (Clytia hemisphaerica)
GTTCAAACAGCCGCACATCTAAAAGAGGCTTACTATAGCTTGAAATTATG
CATATTTCGTGGCTCATTCTGGTTTGCTGTTATTTGATAAGCTCCGCATC
TCCAACAAGTACAGCAGAACAGAGAGCAGATAGAAGAGCTCGAGTCAAGA
AATGCAAGAAGGAAGCAAGCACAACATGCGATTCTTATTCTTTACCGATT
GAAGAATACCAAATGTGTTGGAAATATAAAGTTGAGCTTTGTCTGTCACA
GAATCCCATGAGAACAGAGCAAATGTGTTATGAACAAGAGTTCACGCAAA
CTGCTGAAGTATGTTATCTGGACCAATGCGTCACTGTGGAATTCTCTTTT
ACAGATTGTGTCACGTATTGAATATTAATGAACAGATAAACTTTCCTTGA
ATGTGGTGGTAGACGATTATGTTTCTT

Coding sequence (CDS) from alignment at scaffold_364:236980..237406

>TCONS_00062459 ID=TCONS_00062459|Name=TCONS_00062459|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at scaffold_364:236980..237406 (Clytia hemisphaerica)
ATGCATATTTCGTGGCTCATTCTGGTTTGCTGTTATTTGATAAGCTCCGC
ATCTCCAACAAGTACAGCAGAACAGAGAGCAGATAGAAGAGCTCGAGTCA
AGAAATGCAAGAAGGAAGCAAGCACAACATGCGATTCTTATTCTTTACCG
ATTGAAGAATACCAAATGTGTTGGAAATATAAAGTTGAGCTTTGTCTGTC
ACAGAATCCCATGAGAACAGAGCAAATGTGTTATGAACAAGAGTTCACGC
AAACTGCTGAAGTATGTTATCTGGACCAATGCGTCACTGTGGAATTCTCT
TTTACAGATTGTGTCACGTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039126XLOC_039126Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062459-proteinTCONS_00062459-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062459-exon-scaffold_364-1491911889:236980..237406TCONS_00062459-exon-scaffold_364-1491911889:236980..237406Clytia hemisphaericaexon
TCONS_00062459-exon-scaffold_364-1510915933:236980..237406TCONS_00062459-exon-scaffold_364-1510915933:236980..237406Clytia hemisphaericaexon
TCONS_00062459-exon-scaffold_364-1575043694:236980..237406TCONS_00062459-exon-scaffold_364-1575043694:236980..237406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:236980..237406 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	5.43999	5.68049	125.071	76.1015	78.3177	126.16	0	0	0.0924102	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top