TCONS_00062458 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062458
Unique NameTCONS_00062458
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length386

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062458 ID=TCONS_00062458|Name=TCONS_00062458|organism=Clytia hemisphaerica|type=transcript|length=386bp
ACTTTTCATAACATGCTTGAAGCTTTAATTCAACAGACATGCAATCACCA
TGCCAGCACACATTGACGAAGTGTGATATATCATGCAACGTACATTCACC
TGCACCTATGCCACCACGTTGGAAACTCAAGCTCGTACATCCTGTGATCA
CAGATTGCCAACACGTGAAGAATTCATCGACACCATCACAACTTTGATTG
GCAAAATGTTTGCACCATTCGATACGATATCTCATCCGCATCAGTTCCAA
CTTCTTCATTGATTTATCTGGATCAACTGTCTTTGAATCACACGTACTTA
TTAAAAGTATAGCGAATATGAAAACTGTTATGGTTAGCAACTTCTGCTGC
ATTTTAATCTAATAATTCTTCAGACGTGTCTTTGCG
Run BLAST on NCBI

protein sequence of TCONS_00062458-protein

>TCONS_00062458-protein ID=TCONS_00062458-protein|Name=TCONS_00062458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MQQKLLTITVFIFAILLISTCDSKTVDPDKSMKKLELMRMRYRIEWCKHF
ANQSCDGVDEFFTCWQSVITGCTSLSFQRGGIGAGECTLHDISHFVNVCW
HGDCMSVELKLQACYEK
Run BLAST on NCBI

transcript from alignment at scaffold_364:233127..233512

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062458 ID=TCONS_00062458|Name=TCONS_00062458|organism=Clytia hemisphaerica|type=transcript|length=386bp|location=Sequence derived from alignment at scaffold_364:233127..233512 (Clytia hemisphaerica)
CGCAAAGACACGTCTGAAGAATTATTAGATTAAAATGCAGCAGAAGTTGC
TAACCATAACAGTTTTCATATTCGCTATACTTTTAATAAGTACGTGTGAT
TCAAAGACAGTTGATCCAGATAAATCAATGAAGAAGTTGGAACTGATGCG
GATGAGATATCGTATCGAATGGTGCAAACATTTTGCCAATCAAAGTTGTG
ATGGTGTCGATGAATTCTTCACGTGTTGGCAATCTGTGATCACAGGATGT
ACGAGCTTGAGTTTCCAACGTGGTGGCATAGGTGCAGGTGAATGTACGTT
GCATGATATATCACACTTCGTCAATGTGTGCTGGCATGGTGATTGCATGT
CTGTTGAATTAAAGCTTCAAGCATGTTATGAAAAGT

Coding sequence (CDS) from alignment at scaffold_364:233127..233512

>TCONS_00062458 ID=TCONS_00062458|Name=TCONS_00062458|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_364:233127..233512 (Clytia hemisphaerica)
ATGCAGCAGAAGTTGCTAACCATAACAGTTTTCATATTCGCTATACTTTT
AATAAGTACGTGTGATTCAAAGACAGTTGATCCAGATAAATCAATGAAGA
AGTTGGAACTGATGCGGATGAGATATCGTATCGAATGGTGCAAACATTTT
GCCAATCAAAGTTGTGATGGTGTCGATGAATTCTTCACGTGTTGGCAATC
TGTGATCACAGGATGTACGAGCTTGAGTTTCCAACGTGGTGGCATAGGTG
CAGGTGAATGTACGTTGCATGATATATCACACTTCGTCAATGTGTGCTGG
CATGGTGATTGCATGTCTGTTGAATTAAAGCTTCAAGCATGTTATGAAAA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039125XLOC_039125Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062458-proteinTCONS_00062458-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062458-exon-scaffold_364-1491911889:233127..233512TCONS_00062458-exon-scaffold_364-1491911889:233127..233512Clytia hemisphaericaexon
TCONS_00062458-exon-scaffold_364-1510915933:233127..233512TCONS_00062458-exon-scaffold_364-1510915933:233127..233512Clytia hemisphaericaexon
TCONS_00062458-exon-scaffold_364-1575043694:233127..233512TCONS_00062458-exon-scaffold_364-1575043694:233127..233512Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:233127..233512 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.801757	0.19546	0	0.222033	3.51395	2.77677	8.24628	8.68508	45.098	25.943	12.3874	32.9724	0	0	0	0.122142	0.601876	0	0	0.445928	0.193796	0	0	0.626818	0	0	0	0.293319	0.222472	0.453327
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top