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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062456 ID=TCONS_00062456|Name=TCONS_00062456|organism=Clytia hemisphaerica|type=transcript|length=1154bp
AAAACAGAGATCACGATCAAACCAAAAACACTGAATTTTCCATGGAATAC
TGAAGGCTTAATAAAATCTTCCAAgcgaaaacaaaaactttatgatagat
atttaagcaaaaaaacttaTGATAATGAAATAGCatataaaacttacaaa
aagatttttgaaaaaattaaaaagaaagccaAAAAAGATCATTATTCAAA
ACGCATTATTAAATTCCAAGGGAATTGATAACAAATCTGGAATATCATCA
AAGACATAATCGGAAGGTCAAGATCAGCTATACAATTTCCACAagaatta
aaatacaaaaatcgaaTTCTCAGTCAAAAACCCGCCATAGCTGAAACTTT
CAACAATTTCTTCTCCTTGATAGGTAAAAACCTGGCGTCAAAAATACCNA
ACTTTCAACGATTTCTTCTCCTCGATAGGTAAAAACCTGGCGTCAAAAAT
ACCTAATTCTAATAAGGACGTGTTATCTTACATTGAAGACTATGATAAAA
ATATGTCTTCTGAACCTTTGACAATTGAAGAACTTGACCAAGCTTTCAAA
TCATTACAATCCAACTAAAGTCCAGGCATTGATGAGGTTGATATTAACGT
AGTGCAGAATGCATACGAGATAATAAAACCTTGTCTTTACCACATCTTAG
ATCTCTCTCTAAAACAGGGGATTTTCCCAAACGACATGAAAATAGCAAAA
GTAACGCCTATTTTTAAAAGTGGCTAAAAAGACAAACCGGGAAACTACAG
ACCAATTTCAGTCCtaccttgtttttcaaaattacttgAAAGAATTATGT
ACAACAGACTTTACGAATATCTAACAACTAACAAACTCTTATACCAAAAA
CAATTCGGCTTTCAACGAAAACACTCTACAGAACATGCACTACTAGGACT
AATAGACGGGATCGCTgactcttttgaaaaaaatgaattcactCCTGGTG
TCTTCATTGACCTATTAAAGGCCTTTGATACTGTTGACCATAACATACTG
ACTGCTAAACTTGAACCATACGGAGTAACTGACAAAAACTTAGACTGGTT
CAAAAACTATTTGGCAGGACGTAAACAATGTGTATCATACGGAGACTTGA
CTACAACACCAAAAGCAGTTGAGTGTGGTGTCCCACAGGGATCCATACTA
GGAC Run BLAST on NCBI protein sequence of TCONS_00062456-protein >TCONS_00062456-protein ID=TCONS_00062456-protein|Name=TCONS_00062456-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MYNRLYEYLTTNKLLYQKQFGFQRKHSTEHALLGLIDGIADSFEKNEFTP
GVFIDLLKAFDTVDHNILTAKLEPYGVTDKNLDWFKNYLAGRKQCVSYGD
LTTTPKAVECGVPQGSILG Run BLAST on NCBI transcript from alignment at scaffold_364:207894..209047 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062456 ID=TCONS_00062456|Name=TCONS_00062456|organism=Clytia hemisphaerica|type=transcript|length=1154bp|location=Sequence derived from alignment at scaffold_364:207894..209047 (Clytia hemisphaerica)
GTCCTAGTATGGATCCCTGTGGGACACCACACTCAACTGCTTTTGGTGTT
GTAGTCAAGTCTCCGTATGATACACATTGTTTACGTCCTGCCAAATAGTT
TTTGAACCAGTCTAAGTTTTTGTCAGTTACTCCGTATGGTTCAAGTTTAG
CAGTCAGTATGTTATGGTCAACAGTATCAAAGGCCTTTAATAGGTCAATG
AAGACACCAGGagtgaattcatttttttcaaaagagtcAGCGATCCCGTC
TATTAGTCCTAGTAGTGCATGTTCTGTAGAGTGTTTTCGTTGAAAGCCGA
ATTGTTTTTGGTATAAGAGTTTGTTAGTTGTTAGATATTCGTAAAGTCTG
TTGTACATAATTCTTTcaagtaattttgaaaaacaaggtaGGACTGAAAT
TGGTCTGTAGTTTCCCGGTTTGTCTTTTTAGCCACTTTTAAAAATAGGCG
TTACTTTTGCTATTTTCATGTCGTTTGGGAAAATCCCCTGTTTTAGAGAG
AGATCTAAGATGTGGTAAAGACAAGGTTTTATTATCTCGTATGCATTCTG
CACTACGTTAATATCAACCTCATCAATGCCTGGACTTTAGTTGGATTGTA
ATGATTTGAAAGCTTGGTCAAGTTCTTCAATTGTCAAAGGTTCAGAAGAC
ATATTTTTATCATAGTCTTCAATGTAAGATAACACGTCCTTATTAGAATT
AGGTATTTTTGACGCCAGGTTTTTACCTATCGAGGAGAAGAAATCGTTGA
AAGTTNGGTATTTTTGACGCCAGGTTTTTACCTATCAAGGAGAAGAAATT
GTTGAAAGTTTCAGCTATGGCGGGTTTTTGACTGAGAAttcgatttttgt
attttaattctTGTGGAAATTGTATAGCTGATCTTGACCTTCCGATTATG
TCTTTGATGATATTCCAGATTTGTTATCAATTCCCTTGGAATTTAATAAT
GCGTTTTGAATAATGATCTTTTTtggctttctttttaattttttcaaaaa
tctttttgtaagttttatatGCTATTTCATTATCAtaagtttttttgctt
aaatatctatcataaagtttttgttttcgcTTGGAAGATTTTATTAAGCC
TTCAGTATTCCATGGAAAATTCAGTGTTTTTGGTTTGATCGTGATCTCTG
TTTT Coding sequence (CDS) from alignment at scaffold_364:207894..209047 >TCONS_00062456 ID=TCONS_00062456|Name=TCONS_00062456|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at scaffold_364:207894..209047 (Clytia hemisphaerica)
TCCTAGTATGGATCCCTGTGGGACACCACACTCAACTGCTTTTGGTGTTG
TAGTCAAGTCTCCGTATGATACACATTGTTTACGTCCTGCCAAATAGTTT
TTGAACCAGTCTAAGTTTTTGTCAGTTACTCCGTATGGTTCAAGTTTAGC
AGTCAGTATGTTATGGTCAACAGTATCAAAGGCCTTTAATAGGTCAATGA
AGACACCAGGagtgaattcatttttttcaaaagagtcAGCGATCCCGTCT
ATTAGTCCTAGTAGTGCATGTTCTGTAGAGTGTTTTCGTTGAAAGCCGAA
TTGTTTTTGGTATAAGAGTTTGTTAGTTGTTAGATATTCGTAAAGTCTGT
TGTACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062456-exon-scaffold_364-1491911889:207894..209047 | TCONS_00062456-exon-scaffold_364-1491911889:207894..209047 | Clytia hemisphaerica | exon |
| TCONS_00062456-exon-scaffold_364-1510915933:207894..209047 | TCONS_00062456-exon-scaffold_364-1510915933:207894..209047 | Clytia hemisphaerica | exon |
| TCONS_00062456-exon-scaffold_364-1575043694:207894..209047 | TCONS_00062456-exon-scaffold_364-1575043694:207894..209047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:207894..209047 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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