TCONS_00062454 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062454
Unique NameTCONS_00062454
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062454 ID=TCONS_00062454|Name=TCONS_00062454|organism=Clytia hemisphaerica|type=transcript|length=348bp
CCCGTTCCCTCCATTTGCTTAAGTACAACCCCCTGGGTCCTTTAGTAAAA
AAACTGGATCTAGTAGAATGGATTTGTTGCGTCCTTCTGTTCAATTCGTG
CTTTTAGAATCCATAAATTATATCAAACCACATAAACAATGTGAAGCTCT
CGTGAATGCTGCTGGTAAACGAATTCCATTAGCATCATTCTGTCAAAGTA
TTCTAAGAGTTGGCTTGAGTTGGAGTTATCAACCTTGCTAATCTTTTTAA
GTATCTTCCATCCAGTATCATAGCTCCTACTCCTTTTAGCCCAGCGAGTT
TAAGTACATGTGTTTTTCTGTGACAGAGACGGCGAGTttctgatttgt
Run BLAST on NCBI

transcript from alignment at scaffold_364:188023..188370

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062454 ID=TCONS_00062454|Name=TCONS_00062454|organism=Clytia hemisphaerica|type=transcript|length=348bp|location=Sequence derived from alignment at scaffold_364:188023..188370 (Clytia hemisphaerica)
acaaatcagaaACTCGCCGTCTCTGTCACAGAAAAACACATGTACTTAAA
CTCGCTGGGCTAAAAGGAGTAGGAGCTATGATACTGGATGGAAGATACTT
AAAAAGATTAGCAAGGTTGATAACTCCAACTCAAGCCAACTCTTAGAATA
CTTTGACAGAATGATGCTAATGGAATTCGTTTACCAGCAGCATTCACGAG
AGCTTCACATTGTTTATGTGGTTTGATATAATTTATGGATTCTAAAAGCA
CGAATTGAACAGAAGGACGCAACAAATCCATTCTACTAGATCCAGTTTTT
TTACTAAAGGACCCAGGGGGTTGTACTTAAGCAAATGGAGGGAACGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039121XLOC_039121Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062454-exon-scaffold_364-1491911889:188023..188370TCONS_00062454-exon-scaffold_364-1491911889:188023..188370Clytia hemisphaericaexon
TCONS_00062454-exon-scaffold_364-1510915933:188023..188370TCONS_00062454-exon-scaffold_364-1510915933:188023..188370Clytia hemisphaericaexon
TCONS_00062454-exon-scaffold_364-1575043694:188023..188370TCONS_00062454-exon-scaffold_364-1575043694:188023..188370Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:188023..188370 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.27618	0.746683	0.57798	0	0	0	0.65629	0.614411	1.72065	0.266413	0	1.1899	0.848744	1.41029	1.30438	0.777665	0.766416	1.76749	0.542641	0.851752	0.987103	0.361106	0.585295	1.3303	0.548069	0.244569	0	0	0.849873	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062454 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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