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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062445 ID=TCONS_00062445|Name=TCONS_00062445|organism=Clytia hemisphaerica|type=transcript|length=1527bp
GTAGGAAGATTCTGATCCGTAAGAAAAGATGAAATTCTACAGAACTATCA
CTTTAGGCGTACACTTTCGTAAAAAGAAACTTTCGTGATTTTCGCCTCGA
AAATTTATTAATAAGATTCGAAAACGTGATAAATATTGAACTTCTTCGAG
TATATGTCAGCTTTTAATAACTTCTAAGAAGGAACAACTGTGTTTAGGTC
AATATTCGTTTAAAAATTCTTGCGATATTTTCAAGCTATATGAATCGATG
GAAATggagaaaaatgataaaaattctcGAAAACGCACCTATACATAAAA
TGAAATGAACATTGAAgacaaataattaaaaatgtttacgCATTGTTTCC
AGATGTTCGCAGAGGTAACTTGaagtttgacatttttgaaaattgagttg
gaaattttttcaatttctttttcaatctcTCAAATTCTTTAactttctca
aaatatgtatCTTTCTCCATTTGGTAAATTTCACGACCTTTCTGGATAAT
AACTTCAACATTTCCGAGATGCTTTCTGGCAACAGCCGTGAAACTGTAAT
ACTGAGAGAGTTTAATTCCTGCATATCTCTTAATCCATTCTACGGCTTCA
TCAATGTTCTCAAAATGATCGTAAATGTATGTTGCTTCATTACTTCTGAG
AAATTGAGTAACTCTGTCATGTCCCTGAATCGTTGCGAACTGTTGTTTCC
ATGAGAGCTTCGGCAAACCATCTTTCTCTTgtgatttaatgaaatttagT
ACTAGTATCAACATCATGTCAGCATAAAATCCTTTACTTTCAAATTCGTT
TTTCAAATCGTgtagtaacatttgcaaaatgtttttctctttgTACGGGA
CATACTTGACCTCGACGCCTGGCTCAAGAGCATCAATAATATTTGGAATC
AGATCTGAAAAGCATTCATTTTTGAAGACAATACGAACAAACTTCCGAAT
TTCTTGGTAAGTCTGTTGAAAGATTTCTTTCAACCAGATATTTTCcattt
caagaaatattttcaaagcgTCAATGAACTTCTTTAGAAATATCTTGTAA
TTCTCAGTATTTCGCGGCTTCATGTGAGACAAGACTTGATAacaattttt
aaagttcataagaacatttaaatcAAGGAATAAATGCAAAAGTTGTGTGG
AATGTTCCCAGTCGTTATTCTCGACCAAAAACACAATTACATTACTATAT
TTATCGAAATCAAAATTCTGATTTTCTCCAGCAGGAAGAAGTTTGCAGTA
ATTCAAAAAGAGTTTCTGAAAGTTCTTATTGGCTTTcagctttttcaatt
tttggcggTTATCTTCCAAGCAAAGCTCTGACAAGGTATCTGAATAAACT
TCCAAAAGATTGAATGATGGGCTGACAAATTCTTTTGAGAGCAAATCATC
TAGCAAGTTTGATAAAACATCTCCTTCTCCTCCAAATAAAGAAGTGATTA
AATCTTTTAACAAGTGCTCTTCGGTCAAGTTTTCCAAAATGCCAAGGAAA
TATTCGAAAAGCTCTGTCAAAACNatt Run BLAST on NCBI protein sequence of TCONS_00062445-protein >TCONS_00062445-protein ID=TCONS_00062445-protein|Name=TCONS_00062445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
XVLTELFEYFLGILENLTEEHLLKDLITSLFGGEGDVLSNLLDDLLSKEF
VSPSFNLLEVYSDTLSELCLEDNRQKLKKLKANKNFQKLFLNYCKLLPAG
ENQNFDFDKYSNVIVFLVENNDWEHSTQLLHLFLDLNVLMNFKNCYQVLS
HMKPRNTENYKIFLKKFIDALKIFLEMENIWLKEIFQQTYQEIRKFVRIV
FKNECFSDLIPNIIDALEPGVEVKYVPYKEKNILQMLLHDLKNEFESKGF
YADMMLILVLNFIKSQEKDGLPKLSWKQQFATIQGHDRVTQFLRSNEATY
IYDHFENIDEAVEWIKRYAGIKLSQYYSFTAVARKHLGNVEVIIQKGREI
YQMEKDTYFEKVKEFERLKKKLKKFPTQFSKMSNFKLPLRTSGNNA Run BLAST on NCBI transcript from alignment at scaffold_364:20444..21970 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062445 ID=TCONS_00062445|Name=TCONS_00062445|organism=Clytia hemisphaerica|type=transcript|length=1527bp|location=Sequence derived from alignment at scaffold_364:20444..21970 (Clytia hemisphaerica)
aatNGTTTTGACAGAGCTTTTCGAATATTTCCTTGGCATTTTGGAAAACT
TGACCGAAGAGCACTTGTTAAAAGATTTAATCACTTCTTTATTTGGAGGA
GAAGGAGATGTTTTATCAAACTTGCTAGATGATTTGCTCTCAAAAGAATT
TGTCAGCCCATCATTCAATCTTTTGGAAGTTTATTCAGATACCTTGTCAG
AGCTTTGCTTGGAAGATAAccgccaaaaattgaaaaagctgAAAGCCAAT
AAGAACTTTCAGAAACTCTTTTTGAATTACTGCAAACTTCTTCCTGCTGG
AGAAAATCAGAATTTTGATTTCGATAAATATAGTAATGTAATTGTGTTTT
TGGTCGAGAATAACGACTGGGAACATTCCACACAACTTTTGCATTTATTC
CTTgatttaaatgttcttatgaactttaaaaattgtTATCAAGTCTTGTC
TCACATGAAGCCGCGAAATACTGAGAATTACAAGATATTTCTAAAGAAGT
TCATTGAcgctttgaaaatatttcttgaaatgGAAAATATCTGGTTGAAA
GAAATCTTTCAACAGACTTACCAAGAAATTCGGAAGTTTGTTCGTATTGT
CTTCAAAAATGAATGCTTTTCAGATCTGATTCCAAATATTATTGATGCTC
TTGAGCCAGGCGTCGAGGTCAAGTATGTCCCGTAcaaagagaaaaacatt
ttgcaaatgttactacACGATTTGAAAAACGAATTTGAAAGTAAAGGATT
TTATGCTGACATGATGTTGATACTAGTActaaatttcattaaatcacAAG
AGAAAGATGGTTTGCCGAAGCTCTCATGGAAACAACAGTTCGCAACGATT
CAGGGACATGACAGAGTTACTCAATTTCTCAGAAGTAATGAAGCAACATA
CATTTACGATCATTTTGAGAACATTGATGAAGCCGTAGAATGGATTAAGA
GATATGCAGGAATTAAACTCTCTCAGTATTACAGTTTCACGGCTGTTGCC
AGAAAGCATCTCGGAAATGTTGAAGTTATTATCCAGAAAGGTCGTGAAAT
TTACCAAATGGAGAAAGatacatattttgagaaagtTAAAGAATTTGAga
gattgaaaaagaaattgaaaaaatttccaactcaattttcaaaaatgtca
aacttCAAGTTACCTCTGCGAACATCTGGAAACAATGcgtaaacattttt
aattatttgtcTTCAATGTTCATTTCATTTTATGTATAGGTGCGTTTTCg
agaatttttatcatttttctccATTTCCATCGATTCATATAGCTTGAAAA
TATCGCAAGAATTTTTAAACGAATATTGACCTAAACACAGTTGTTCCTTC
TTAGAAGTTATTAAAAGCTGACATATACTCGAAGAAGTTCAATATTTATC
ACGTTTTCGAATCTTATTAATAAATTTTCGAGGCGAAAATCACGAAAGTT
TCTTTTTACGAAAGTGTACGCCTAAAGTGATAGTTCTGTAGAATTTCATC
TTTTCTTACGGATCAGAATCTTCCTAC Coding sequence (CDS) from alignment at scaffold_364:20444..21970 >TCONS_00062445 ID=TCONS_00062445|Name=TCONS_00062445|organism=Clytia hemisphaerica|type=CDS|length=1191bp|location=Sequence derived from alignment at scaffold_364:20444..21970 (Clytia hemisphaerica)
atNGTTTTGACAGAGCTTTTCGAATATTTCCTTGGCATTTTGGAAAACTT
GACCGAAGAGCACTTGTTAAAAGATTTAATCACTTCTTTATTTGGAGGAG
AAGGAGATGTTTTATCAAACTTGCTAGATGATTTGCTCTCAAAAGAATTT
GTCAGCCCATCATTCAATCTTTTGGAAGTTTATTCAGATACCTTGTCAGA
GCTTTGCTTGGAAGATAAccgccaaaaattgaaaaagctgAAAGCCAATA
AGAACTTTCAGAAACTCTTTTTGAATTACTGCAAACTTCTTCCTGCTGGA
GAAAATCAGAATTTTGATTTCGATAAATATAGTAATGTAATTGTGTTTTT
GGTCGAGAATAACGACTGGGAACATTCCACACAACTTTTGCATTTATTCC
TTgatttaaatgttcttatgaactttaaaaattgtTATCAAGTCTTGTCT
CACATGAAGCCGCGAAATACTGAGAATTACAAGATATTTCTAAAGAAGTT
CATTGAcgctttgaaaatatttcttgaaatgGAAAATATCTGGTTGAAAG
AAATCTTTCAACAGACTTACCAAGAAATTCGGAAGTTTGTTCGTATTGTC
TTCAAAAATGAATGCTTTTCAGATCTGATTCCAAATATTATTGATGCTCT
TGAGCCAGGCGTCGAGGTCAAGTATGTCCCGTAcaaagagaaaaacattt
tgcaaatgttactacACGATTTGAAAAACGAATTTGAAAGTAAAGGATTT
TATGCTGACATGATGTTGATACTAGTActaaatttcattaaatcacAAGA
GAAAGATGGTTTGCCGAAGCTCTCATGGAAACAACAGTTCGCAACGATTC
AGGGACATGACAGAGTTACTCAATTTCTCAGAAGTAATGAAGCAACATAC
ATTTACGATCATTTTGAGAACATTGATGAAGCCGTAGAATGGATTAAGAG
ATATGCAGGAATTAAACTCTCTCAGTATTACAGTTTCACGGCTGTTGCCA
GAAAGCATCTCGGAAATGTTGAAGTTATTATCCAGAAAGGTCGTGAAATT
TACCAAATGGAGAAAGatacatattttgagaaagtTAAAGAATTTGAgag
attgaaaaagaaattgaaaaaatttccaactcaattttcaaaaatgtcaa
acttCAAGTTACCTCTGCGAACATCTGGAAACAATGcgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062445-exon-scaffold_364-1491911889:20444..21970 | TCONS_00062445-exon-scaffold_364-1491911889:20444..21970 | Clytia hemisphaerica | exon |
| TCONS_00062445-exon-scaffold_364-1510915933:20444..21970 | TCONS_00062445-exon-scaffold_364-1510915933:20444..21970 | Clytia hemisphaerica | exon |
| TCONS_00062445-exon-scaffold_364-1575043694:20444..21970 | TCONS_00062445-exon-scaffold_364-1575043694:20444..21970 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:20444..21970 . |
Blast
The following BLAST results are available for this feature:
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