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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062437 ID=TCONS_00062437|Name=TCONS_00062437|organism=Clytia hemisphaerica|type=transcript|length=5742bp
AAAAAATTACACTATCGATTCAGCATCACGGCATTCACTTGGTAGattat
tcttatagataaaagtCTATAGGCCTATGTTATGTATCGGTAGGTGTATC
GAGAATCCATAATTTATCCTTATCGATAAAGtgttgaaaacaaaagtgat
ccTTTTCCCATGGAATGTCACATATCTTGTTCAAAACCATGAAAATAGAC
TCaagttaatatttttttgaaaaattctttctcgTTGCTGAGATATGGAC
CCATGAAATTTGTCTCAAAACGGTCaaatttttgggttggaaattgaAAA
GGACTTTTAAGTCACCATTCATGACTAATCAAGCATTCTTTACATCAGAA
ACCACCTTGTCATGGTACTCTGCCATGATTTCTGATCAGGATAACTAATT
TTCAGACGTTTTACTCATTTCCTTGtctaagaaaacaaaaaatgcctAAT
CTTTGAAGACAATTTCACCAAGAAGCAAGAGGTTGCACATGGATGATTTT
GAATGATTTGGAAGACAGCCCTACATGGACTGTTaaagatgtaaaaaaaa
ttatgtgcGACCTCACGTTTTCAGGCAATGACCTGCAAAATAGGTATAAC
TACATTATTGTTTGTATTTTTAgtttcaaattcataaaaaaacatgtctG
CATCAGCTTTTGCAGCCAACCAAATGGCAGGAGGGAAAAGGGAACCCATT
ACTCAAGCAACTGTTCAGAAAATGCTTGATGAAAATACACAATTGATTCA
GGCTATAATTGAATATCAAAATCAAGGCAAATTACGCGAATGTGCTCAAT
ACCAATCGATTTTACATAGGAACTTAATTTTTCTTGCAACGCTGGCTGAT
TCCACATTGAATCAACAACAAGGAGGTGGACAGCCACAAAAAGGGAATAC
CCAGCAACAAGGAAACTcccaacaacaacagcaacaacaaataCAAGGAG
GTATGCCAAACATAATGCAGCAACAACAACAGATGCAACAAACACAAATG
TTAAaacaacaacatcaacaacaacagcaacaaacACCACCAACACAACC
ACAGACAAATCAAATGCCATCTCAGCAACAAAATATGCAAATGCAACAAG
TTCCAAATCAACTTCAACAACAACCACCAAATCTTCAAGCTAAACCACCA
CAACAAACTCAACAACTACTACTGCAACAGCAGCGCCAGGCCCAGCTcaa
acaacagcaacaacaacaacaacaacaacaacctcaAGCTCCAACGACAA
CACATTCTCCATTACAAAACCAACAGACTCTCTCTCCCCAACAACAGCAT
AATGCTCCCCAATTATCACCTGCTGTTCAAAATGTAGCTAGCCCTGCATC
AGCAGGAACTCCTCCAAACAATACATTGCTTCAAAATAACACAGCTGATT
CAACTAACTCTCCCTCGTCAGCCCCATCACAATCACCTGCCCCATCTACA
GTACCTAATCCTTCTTCTTCACCGCTAACACAGCCAACTGCAGCAACAGT
TACCATGAATGGGACAGCTTCAGTGAATACAAACGTTGCTACTCCAACAA
CATCGAACACTTCCTTACCTAACCAAATACAACCTCAGGCTAATCCCATG
AATCAGATGCCAATGATGGCAGGTTATGGTCAGCCTCCCATGGGTATGAT
GCCAGGCATGCAAGGGATGCGTGGGATGATGCCACCTGCAATGATTCCTG
GTATGCCACTAGGAGCCCACCCTACTCCTGAAATGATTCAAAATATGATG
ATGCAGCAACAAATTGCAGCACGTATGGCAGCTCCCCAGCCTGACGGCTC
TGGTGGGTTTCCACAAGCCAATATGATGATGACTGCAACAAATAATAGTA
CACCAGCCAccacagctcaaaattttaaTGGATAAAGAAAAATAGTATAT
TAATTTGGTTGTTGTTTTTAAAGCTGGAATGCTTTTTATAATCAGATTGA
AAGTGCATTTTATACCTGAGTACTACTATGGAAAGAACATGGAAGTTTAC
TTTCAAGATaatttttaaagtaattttaacattgctttttagagaaaaaa
caGAAATGAGAATAACATTGTTTTTTAACTGTAACATATTATCACCAAAA
ACTATGTaacaaattttgcaaattttttattgataaatatAATCTTTGTG
TCTTGTTTGTACTAATACAGCTGAATCTGAAGGTCAACTTACTACAGTCA
CAAAATAATCATGTAAATATAAAACAAGCATCTCTGTATTTCATTGCAAT
GTTATGGCTTGTTAACTGGGTTTCTTTCATTGTTATTGGGCCATTTTTTG
TAACTATATATGCCTGGGTGTTAACAAGAGTTTCAAAAGGTTTTCCTTTC
CTTGACTTTTTTCATGCCCACTGTGCCATCATAATATCGGtatataactt
ttttttatctatttattttcagcaaacaaataaaaaagatacaaCAAGAA
GATGAAAGTATTAAGCGGGGCTTGCCCTGACTCTGCATGCCAGAAACAGT
TGTTTTTCTCTGAAGAACACACAGCAACAATTGAATGTTCAAATTGTGGA
CAGCGTCACGAAATCAAACACCTTGTTAATGTAGAACAAGTGTCTGACCC
AGGACATGCGCTTCGTGGATTACTCCATAGCCTTGTTGAAGGACACATCC
CTAGTCATgttaaaaaatcaagtgaaTTTGTCAAGGTTAAAGGATTGTCA
AACTTTGGTTGCAAACTAATTTCTCCATTACTTACAACTTATGGTTTAAA
AGGACAAGAAGTTCGTCTTTTGAAAGACATGAACCAAGGTGAAACATTTG
ACTGCTCTCACCTGGCTGACCGAGCCTTCTTAATTGAAGAGCAAAATTTA
TTGATCCCAGGTTACGGTAAAGATACAGCTGCTAGTTACCTCCATGACAC
TCTGGATGAGATTGCCAAAGTTAATGATAATGAGGAGAGATTAATACCAA
TCCATGCAGATGGAGACGGCCATTGCTTGCCACATGCTATCTCCAGAGCT
TTGGTTGGTCATGAATTATTTTGGCATCCATTACTAACCAACTTGAAATT
ACATTTCATGAACCGCTTAGAAGactataaaaatttgtttaaagatttCA
TTGAGATTGAGGAATGGAAAGATATTATAGATGAAAGTGACCCTAATTTT
GTTCCAAAGTATGGTGAAATGCACGGTTTAAGAAATATTCATATCCTTGG
ACTTGCTAATATTCTGCATCGTCCAGTaattttgattgacagtttggaAG
GTATGAAATCGAAAGGTGATTATAGTGGAGTGTTTCTCCCAGGGCTAGTT
CCTATCGAAAAGTGTAGAAACAAAAATGGCAAGCTTCATAAACCTATTGT
TATTTCTTGGAGTAGCAAAGGTCGCAACCATTTCATTCCACTTGTTGGCA
TCCAAAACAAGGAATTACCACGATTCCCAGCTAAAGTGTTACCTAAAGTA
TGGGGTCTTTCCCAAAATCTTTTAACGGAGTATATCGATTTTGAGGATGA
AGCTTGCATTATTGGTGGTAATAACAGTCTACAGGAGAAATATTTGATCA
AACTGACTCAAGCTATGGAGAGACAATTTCTTCTGTTGAAAGGTGTAGCA
ACTAGTGTCGTCACAGATGTCTATCACCACCTTTTTCGATCATCTGGTCT
TGTAGGGCTTCCTCCGCAAACAATCACTGAAGCAGCTTTAGGTTTGACAC
GAGAGGAACGTCTTTATAAATGTTTATATTGCCATGCGGTCATGGAAGAA
AAATTGCCGTGTGCTCATTCAATGTTGGAACCAGGGGGTGAACTCTTCCA
AATTGCGATCAAAACACATGGGGTGCTGAAAGATAAATTCAAGTATAGAT
TCCCAGTTAACGATATTATATGCCAGTATGATAAACAATCAAACAGGTTG
AAGTATGTACACACACCAGAATCATTGTCGTGCCCACACTGTAAAGGAGC
TTTAAGGAAAGTCAAACTTGATGGCAATCTGGAATATATGAATGGTGATC
AACTATCCAAGTTAGCTAATAACAGTTCTTGTGGTTGTGGTTACAAGCAT
TATTGGGACGGAAAGGAGTATGATAACCTCCCTATCAAAATCCCTCTCGA
ACTTGAATGGGATGATGAAACAGTTGATGATCACGTCTATTGGTTCCAAA
ATGAATCTGATCCTACTCTCAACTCAAATGCTTTTGAACTTGCCCGAGAG
AAAGTCCAAGAACATTTCCCAGGGACTTTCGGTAGTGAGAGATTAGCTGA
GAAAATAGTGGATACTATTTTTGAGTATACTACTGCGTATTACAAGGATA
CATCAGTCGAACCAGAGGCAATGGAATTAGATGCACCAACATGTATCCCA
ACCAAGATTATCTTAACTGGAGAAAAATCCAAAACTCTACACAAAGAAGA
ATTGGGTGCCAGTCGTACTGAACgaattatgaaaaagaaaatcgaaCATA
AGGCGCCGATTCAACAAAAGAGAGCAAGCACCTCTAATCAAATGGACAAA
GGTAATGAGACTAATGCTGTCAGTAACTCAACATCCAAATTATCCTCTGT
GAAGGATCTAGGTGATTCGCCTACCAGAGAAAAGGTTAAGAAATCTGAGA
CTACGATAAATAAAATTCGTATTTCTTGCCAAGACAAAGGGAACACCATG
TTCACATTAGAATCAACGACCTCCTTTGACAACTTGgtaaaatttatcaa
gaaaCATTTCGACATTGAGAATGAAGATATTACTATGAAATATGGGTTCC
CTCCAAAGCCTctcaatcaaaatgaaaataatcctGAGGAACCTCTAACC
ATGCTCAAAGCTGGAGATCGAGTTAATGTTATCATCGTCAAGAAGGTCAG
AAAGGAGGACCCTTTACCATCGAATGATACACGATCGAATCAGCAGAAAT
CAACACAACAACCTACAACAGACAAAATGAGTCAATTCGCCAGCCAATTA
GCTCAAATCATGGGTCAGGACTTGTGGGAATGGGCTTGCTCCCAACGAAA
CATGTTCCAAGTTAATGGTTGGATTTACAAAATGGCTTTTCGTGATCTGG
GTCTTCTAACTGATGACCAGCATTTGTCATTACCTTGTTTCCCCAAGAAG
ATCTTTGTTTACAATAAGAAAGAGGATGAAATTTATCTATGTCTTGGTAA
ACATCATATTTTTGTTCAACCTCTTACTCGCAAAGAAGAGGAGTTAGCGG
CAGAGCAAGCTGAAACTAAAGCTCATGAGCTGAAACCATCCATTCATCAT
GAGTTGAAACAACCTGCAAATCAACAACCAGAGACTGATAATTCACCGAA
AGTGAACAATTTTTCAGGTGAAGGTTATATGTTAGCTAACAATGAGAAAG
CACCTGAAAATGTTCGGACCATTCGACAAACAATTGATTTTGCAACTTTT
GGACGCGAGGATAAAACTATTGATGATGAACCCATGGTCGAGCAGAAGGA
AAATGAGTCCATGGATACTTGAGTAGATTGTGGAAATTTATGtttgtttg
atattttgatattttgaaattatataatAATTTATGATGAAGTAGTTAGG
GTACTATTATCTTTGCTACTTTTTGGTTCAAACAAGACTATCTGATATTC
TTCTGCCTAATCATTGTAATCAATGTAAAAGTAAGTATGCACCTTCCACC
CACTGTGTACTGAATACAATTTTTCTACAAAGTACTTTTCATTCTAATTT
GTTCAattcattgttttctttttgtaaatagTTATTTGAAAT Run BLAST on NCBI protein sequence of TCONS_00062437-protein >TCONS_00062437-protein ID=TCONS_00062437-protein|Name=TCONS_00062437-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1006bp
MKVLSGACPDSACQKQLFFSEEHTATIECSNCGQRHEIKHLVNVEQVSDP
GHALRGLLHSLVEGHIPSHVKKSSEFVKVKGLSNFGCKLISPLLTTYGLK
GQEVRLLKDMNQGETFDCSHLADRAFLIEEQNLLIPGYGKDTAASYLHDT
LDEIAKVNDNEERLIPIHADGDGHCLPHAISRALVGHELFWHPLLTNLKL
HFMNRLEDYKNLFKDFIEIEEWKDIIDESDPNFVPKYGEMHGLRNIHILG
LANILHRPVILIDSLEGMKSKGDYSGVFLPGLVPIEKCRNKNGKLHKPIV
ISWSSKGRNHFIPLVGIQNKELPRFPAKVLPKVWGLSQNLLTEYIDFEDE
ACIIGGNNSLQEKYLIKLTQAMERQFLLLKGVATSVVTDVYHHLFRSSGL
VGLPPQTITEAALGLTREERLYKCLYCHAVMEEKLPCAHSMLEPGGELFQ
IAIKTHGVLKDKFKYRFPVNDIICQYDKQSNRLKYVHTPESLSCPHCKGA
LRKVKLDGNLEYMNGDQLSKLANNSSCGCGYKHYWDGKEYDNLPIKIPLE
LEWDDETVDDHVYWFQNESDPTLNSNAFELAREKVQEHFPGTFGSERLAE
KIVDTIFEYTTAYYKDTSVEPEAMELDAPTCIPTKIILTGEKSKTLHKEE
LGASRTERIMKKKIEHKAPIQQKRASTSNQMDKGNETNAVSNSTSKLSSV
KDLGDSPTREKVKKSETTINKIRISCQDKGNTMFTLESTTSFDNLVKFIK
KHFDIENEDITMKYGFPPKPLNQNENNPEEPLTMLKAGDRVNVIIVKKVR
KEDPLPSNDTRSNQQKSTQQPTTDKMSQFASQLAQIMGQDLWEWACSQRN
MFQVNGWIYKMAFRDLGLLTDDQHLSLPCFPKKIFVYNKKEDEIYLCLGK
HHIFVQPLTRKEEELAAEQAETKAHELKPSIHHELKQPANQQPETDNSPK
VNNFSGEGYMLANNEKAPENVRTIRQTIDFATFGREDKTIDDEPMVEQKE
NESMDT Run BLAST on NCBI transcript from alignment at scaffold_364:335117..341194- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062437 ID=TCONS_00062437|Name=TCONS_00062437|organism=Clytia hemisphaerica|type=transcript|length=6078bp|location=Sequence derived from alignment at scaffold_364:335117..341194- (Clytia hemisphaerica)
AAAAAATTACACTATCGATTCAGCATCACGGCATTCACTTGGTAGATTAT
TCTTATAGATAAAAGTCTATAGGCCTATGTTATGTATCGGTAGGTGTATC
GAGAATCCATAATTTATCCTTATCGATAAAGTGTTGAAAACAAAAGTGAT
CCTTTTCCCATGGAATGTCACATATCTTGTTCAAAACCATGAAAATAGAC
TCAAGTTAATATTTTTTTGAAAAATTCTTTCTCGTTGCTGAGATATGGAC
CCATGAAATTTGTCTCAAAACGGTCAAATTTTTGGGTTGGAAATTGAAAA
GGACTTTTAAGTCACCATTCATGACTAATCAAGCATTCTTTACATCAGAA
ACCACCTTGTCATGGTACTCTGCCATGATTTCTGATCAGGATAACTAATT
TTCAGACGTTTTACTCATTTCCTTGTCTAAGAAAACAAAAAATGCCTAAT
CTTTGAAGACAATTTCACCAAGAAGCAAGAGGTTGCACATGGATGATTTT
GAATGATTTGGAAGACAGCCCTACATGGACTGTTAAAGATGTAAAAAAAA
TTATGTGCGACCTCACGTTTTCAGGCAATGACCTGCAAAATAGGTATAAC
TACATTATTGTTTGTATTTTTAGTTTCAAATTCATAAAAAAACATGTCTG
CATCAGCTTTTGCAGCCAACCAAATGGCAGGAGGGAAAAGGGAACCCATT
ACTCAAGCAACTGTTCAGAAAATGCTTGATGAAAATACACAATTGATTCA
GGCTATAATTGAATATCAAAATCAAGGCAAATTACGCGAATGTGCTCAAT
ACCAATCGATTTTACATAGGAACTTAATTTTTCTTGCAACGCTGGCTGAT
TCCACATTGAATCAACAACAAGGAGGTGGACAGCCACAAAAAGGGAATAC
CCAGCAACAAGGAAACTCCCAACAACAACAGCAACAACAAATACAAGGAG
GTATGCCAAACATAATGCAGCAACAACAACAGATGCAACAAACACAAATG
TTAAAACAACAACATCAACAACAACAGCAACAAACACCACCAACACAACC
ACAGACAAATCAAATGCCATCTCAGCAACAAAATATGCAAATGCAACAAG
TTCCAAATCAACTTCAACAACAACCACCAAATCTTCAAGCTAAACCACCA
CAACAAACTCAACAACTACTACTGCAACAGCAGCGCCAGGCCCAGCTCAA
ACAACAGCAACAACAACAACAACAACAACAACCTCAAGCTCCAACGACAA
CACATTCTCCATTACAAAACCAACAGACTCTCTCTCCCCAACAACAGCAT
AATGCTCCCCAATTATCACCTGCTGTTCAAAATGTAGCTAGCCCTGCATC
AGCAGGAACTCCTCCAAACAATACATTGCTTCAAAATAACACAGCTGATT
CAACTAACTCTCCCTCGTCAGCCCCATCACAATCACCTGCCCCATCTACA
GTACCTAATCCTTCTTCTTCACCGCTAACACAGCCAACTGCAGCAACAGT
TACCATGAATGGGACAGCTTCAGTGAATACAAACGTTGCTACTCCAACAA
CATCGAACACTTCCTTACCTAACCAAATACAACCTCAGGCTAATCCCATG
AATCAGATGCCAATGATGGCAGGTTATGGTCAGCCTCCCATGGGTATGAT
GCCAGGCATGCAAGGGATGCGTGGGATGATGCCACCTGCAATGATTCCTG
GTATGCCACTAGGAGCCCACCCTACTCCTGAAATGATTCAAAATATGATG
ATGCAGCAACAAATTGCAGCACGTATGGCAGCTCCCCAGCCTGACGGCTC
TGGTGGGTTTCCACAAGCCAATATGATGATGACTGCAACAAATAATAGTA
CACCAGCCACCACAGCTCAAAATTTTAATGGATAAAGAAAAATAGTATAT
TAATTTGGTTGTTGTTTTTAAAGCTGGAATGCTTTTTATAATCAGATTGA
AAGTGCATTTTATACCTGAGTACTACTATGGAAAGAACATGGAAGTTTAC
TTTCAAGATAATTTTTAAAGTAATTTTAACATTGCTTTTTAGAGAAAAAA
CAGAAATGAGAATAACATTGTTTTTTAACTGTAACATATTATCACCAAAA
ACTATGTAACAAATTTTGCAAATTTTTTATTGATAAATATAATCTTTGTG
TCTTGTTTGTACTAATACAGCTGAATCTGAAGGTCAACTTACTACAGTCA
CAAAATAATCATGTAAATATAAAACAAGCATCTCTGTATTTCATTGCAAT
GTTATGGCTTGTTAACTGGGTTTCTTTCATTGTTATTGGGCCATTTTTTG
TAACTATATATGCCTGGGTGTTAACAAGAGTTTCAAAAGGTTTTCCTTTC
CTTGACTTTTTTCATGCCCACTGTGCCATCATAATATCGGTATATAACTT
TTTTTTATCTATTTATTTTCAGCAAACAAATAAAAAAGATACAACAAGAA
GATGAAAGTATTAAGCGGGGCTTGCCCTGACTCTGCATGCCAGAAACAGT
TGTTTTTCTCTGAAGAACACACAGCAACAATTGAATGTTCAAATTGTGGA
CAGCGTCACGAAATCAAACACCTTGTTAATGTAGAACAAGTGTCTGACCC
AGGACATGCGCTTCGTGGATTACTCCATAGCCTTGTTGAAGGACACATCC
CTAGTCATGTTAAAAAATCAAGTGAATTTGTCAAGGTTAAAGGATTGTCA
AACTTTGGTTGCAAACTAATTTCTCCATTACTTACAACTTATGGTTTAAA
AGGACAAGAAGTTCGTCTTTTGAAAGACATGAACCAAGGTGAAACATTTG
ACTGCTCTCACCTGGCTGACCGAGCCTTCTTAATTGAAGAGCAAAATTTA
TTGATCCCAGGTTACGGTAAAGATACAGCTGCTAGTTACCTCCATGACAC
TCTGGATGAGATTGCCAAAGTTAATGATAATGAGGAGAGATTAATACCAA
TCCATGCAGATGGAGACGGCCATTGCTTGCCACATGCTATCTCCAGAGCT
TTGGTTGGTCATGAATTATTTTGGCATCCATTACTAACCAACTTGAAATT
ACATTTCATGAACCGCTTAGAAGACTATAAAAATTTGTTTAAAGATTTCA
TTGAGATTGAGGAATGGAAAGATATTATAGATGAAAGTGACCCTAATTTT
GTTCCAAAGTATGGTGAAATGCACGGTTTAAGAAATATTCATATCCTTGG
ACTTGCTAATATTCTGCATCGTCCAGTAATTTTGATTGACAGTTTGGAAG
GTATGAAATCGAAAGGTGATTATAGTGGAGTGTTTCTCCCAGGGCTAGTT
CCTATCGAAAAGTGTAGAAACAAAAATGGCAAGCTTCATAAACCTATTGT
TATTTCTTGGAGTAGCAAAGGTCGCAACCATTTCATTCCACTTGTTGGCA
TCCAAAACAAGGAATTACCACGATTCCCAGCTAAAGTGTTACCTAAAGTA
TGGGGTCTTTCCCAAAATCTTTTAACGGAGTATATCGATTTTGAGGATGA
AGCTTGCATTATTGGTGGTAATAACAGTCTACAGGAGAAATATTTGATCA
AACTGACTCAAGCTATGGAGAGACAATTTCTTCTGTTGAAAGGTGTAGCA
ACTAGTGTCGTCACAGATGTCTATCACCACCTTTTTCGATCATCTGGTCT
TGTAGGGCTTCCTCCGCAAACAATCACTGAAGCAGCTTTAGGTTTGACAC
GAGAGGAACGTCTTTATAAATGTTTATATTGCCATGCGGTCATGGAAGAA
AAATTGCCGTGTGCTCATTCAATGTTGGAACCAGGTGAGCATTTCTCAAC
TTTTTCATTTTTGATTTATTTTTGATGGGCTTGTGAATAAAAAACTAGCT
CCGACGAATTTTAGATTCTAGGTGGGCAAATTCTTAGCAAGCCCGTGAAG
AGGTGGACCGAAATTTTAGACTCGTGAATTGTTATTTTATTTGTGCTTTG
GACTGGTGATTTTTGCCGTCCGCTGAGCCTAAATAAGACCCCGGGATGTT
ATTGTCATAAACACTAAATCCTAATTTATTTTGAAACTTCAGACACATTT
ATTGATGACTTGACGTTTTCTAATGTGAATTGCGAGTGTTTGATTTTATA
CAAACTTTAATATTCTTTAGGGGGTGAACTCTTCCAAATTGCGATCAAAA
CACATGGGGTGCTGAAAGATAAATTCAAGTATAGATTCCCAGTTAACGAT
ATTATATGCCAGTATGATAAACAATCAAACAGGTTGAAGTATGTACACAC
ACCAGAATCATTGTCGTGCCCACACTGTAAAGGAGCTTTAAGGAAAGTCA
AACTTGATGGCAATCTGGAATATATGAATGGTGATCAACTATCCAAGTTA
GCTAATAACAGTTCTTGTGGTTGTGGTTACAAGCATTATTGGGACGGAAA
GGAGTATGATAACCTCCCTATCAAAATCCCTCTCGAACTTGAATGGGATG
ATGAAACAGTTGATGATCACGTCTATTGGTTCCAAAATGAATCTGATCCT
ACTCTCAACTCAAATGCTTTTGAACTTGCCCGAGAGAAAGTCCAAGAACA
TTTCCCAGGGACTTTCGGTAGTGAGAGATTAGCTGAGAAAATAGTGGATA
CTATTTTTGAGTATACTACTGCGTATTACAAGGATACATCAGTCGAACCA
GAGGCAATGGAATTAGATGCACCAACATGTATCCCAACCAAGATTATCTT
AACTGGAGAAAAATCCAAAACTCTACACAAAGAAGAATTGGGTGCCAGTC
GTACTGAACGAATTATGAAAAAGAAAATCGAACATAAGGCGCCGATTCAA
CAAAAGAGAGCAAGCACCTCTAATCAAATGGACAAAGGTAATGAGACTAA
TGCTGTCAGTAACTCAACATCCAAATTATCCTCTGTGAAGGATCTAGGTG
ATTCGCCTACCAGAGAAAAGGTTAAGAAATCTGAGACTACGATAAATAAA
ATTCGTATTTCTTGCCAAGACAAAGGGAACACCATGTTCACATTAGAATC
AACGACCTCCTTTGACAACTTGGTAAAATTTATCAAGAAACATTTCGACA
TTGAGAATGAAGATATTACTATGAAATATGGGTTCCCTCCAAAGCCTCTC
AATCAAAATGAAAATAATCCTGAGGAACCTCTAACCATGCTCAAAGCTGG
AGATCGAGTTAATGTTATCATCGTCAAGAAGGTCAGAAAGGAGGACCCTT
TACCATCGAATGATACACGATCGAATCAGCAGAAATCAACACAACAACCT
ACAACAGACAAAATGAGTCAATTCGCCAGCCAATTAGCTCAAATCATGGG
TCAGGACTTGTGGGAATGGGCTTGCTCCCAACGAAACATGTTCCAAGTTA
ATGGTTGGATTTACAAAATGGCTTTTCGTGATCTGGGTCTTCTAACTGAT
GACCAGCATTTGTCATTACCTTGTTTCCCCAAGAAGATCTTTGTTTACAA
TAAGAAAGAGGATGAAATTTATCTATGTCTTGGTAAACATCATATTTTTG
TTCAACCTCTTACTCGCAAAGAAGAGGAGTTAGCGGCAGAGCAAGCTGAA
ACTAAAGCTCATGAGCTGAAACCATCCATTCATCATGAGTTGAAACAACC
TGCAAATCAACAACCAGAGACTGATAATTCACCGAAAGTGAACAATTTTT
CAGGTGAAGGTTATATGTTAGCTAACAATGAGAAAGCACCTGAAAATGTT
CGGACCATTCGACAAACAATTGATTTTGCAACTTTTGGACGCGAGGATAA
AACTATTGATGATGAACCCATGGTCGAGCAGAAGGAAAATGAGTCCATGG
ATACTTGAGTAGATTGTGGAAATTTATGTTTGTTTGATATTTTGATATTT
TGAAATTATATAATAATTTATGATGAAGTAGTTAGGGTACTATTATCTTT
GCTACTTTTTGGTTCAAACAAGACTATCTGATATTCTTCTGCCTAATCAT
TGTAATCAATGTAAAAGTAAGTATGCACCTTCCACCCACTGTGTACTGAA
TACAATTTTTCTACAAAGTACTTTTCATTCTAATTTGTTCAATTCATTGT
TTTCTTTTTGTAAATAGTTATTTGAAAT Coding sequence (CDS) from alignment at scaffold_364:335117..341194- >TCONS_00062437 ID=TCONS_00062437|Name=TCONS_00062437|organism=Clytia hemisphaerica|type=CDS|length=6042bp|location=Sequence derived from alignment at scaffold_364:335117..341194- (Clytia hemisphaerica)
GGGGTGAACTCTTCCAAATTGCGATCAAAACACATGGGGTGCTGAAAGAT
AAATTCAAGTATAGATTCCCAGTTAACGATATTATATGCCAGTATGATAA
ACAATCAAACAGGTTGAAGTATGTACACACACCAGAATCATTGTCGTGCC
CACACTGTAAAGGAGCTTTAAGGAAAGTCAAACTTGATGGCAATCTGGAA
TATATGAATGGTGATCAACTATCCAAGTTAGCTAATAACAGTTCTTGTGG
TTGTGGTTACAAGCATTATTGGGACGGAAAGGAGTATGATAACCTCCCTA
TCAAAATCCCTCTCGAACTTGAATGGGATGATGAAACAGTTGATGATCAC
GTCTATTGGTTCCAAAATGAATCTGATCCTACTCTCAACTCAAATGCTTT
TGAACTTGCCCGAGAGAAAGTCCAAGAACATTTCCCAGGGACTTTCGGTA
GTGAGAGATTAGCTGAGAAAATAGTGGATACTATTTTTGAGTATACTACT
GCGTATTACAAGGATACATCAGTCGAACCAGAGGCAATGGAATTAGATGC
ACCAACATGTATCCCAACCAAGATTATCTTAACTGGAGAAAAATCCAAAA
CTCTACACAAAGAAGAATTGGGTGCCAGTCGTACTGAACGAATTATGAAA
AAGAAAATCGAACATAAGGCGCCGATTCAACAAAAGAGAGCAAGCACCTC
TAATCAAATGGACAAAGGTAATGAGACTAATGCTGTCAGTAACTCAACAT
CCAAATTATCCTCTGTGAAGGATCTAGGTGATTCGCCTACCAGAGAAAAG
GTTAAGAAATCTGAGACTACGATAAATAAAATTCGTATTTCTTGCCAAGA
CAAAGGGAACACCATGTTCACATTAGAATCAACGACCTCCTTTGACAACT
TGGTAAAATTTATCAAGAAACATTTCGACATTGAGAATGAAGATATTACT
ATGAAATATGGGTTCCCTCCAAAGCCTCTCAATCAAAATGAAAATAATCC
TGAGGAACCTCTAACCATGCTCAAAGCTGGAGATCGAGTTAATGTTATCA
TCGTCAAGAAGGTCAGAAAGGAGGACCCTTTACCATCGAATGATACACGA
TCGAATCAGCAGAAATCAACACAACAACCTACAACAGACAAAATGAGTCA
ATTCGCCAGCCAATTAGCTCAAATCATGGGTCAGGACTTGTGGGAATGGG
CTTGCTCCCAACGAAACATGTTCCAAGTTAATGGTTGGATTTACAAAATG
GCTTTTCGTGATCTGGGTCTTCTAACTGATGACCAGCATTTGTCATTACC
TTGTTTCCCCAAGAAGATCTTTGTTTACAATAAGAAAGAGGATGAAATTT
ATCTATGTCTTGGTAAACATCATATTTTTGTTCAACCTCTTACTCGCAAA
GAAGAGGAGTTAGCGGCAGAGCAAGCTGAAACTAAAGCTCATGAGCTGAA
ACCATCCATTCATCATGAGTTGAAACAACCTGCAAATCAACAACCAGAGA
CTGATAATTCACCGAAAGTGAACAATTTTTCAGGTGAAGGTTATATGTTA
GCTAACAATGAGAAAGCACCTGAAAATGTTCGGACCATTCGACAAACAAT
TGATTTTGCAACTTTTGGACGCGAGGATAAAACTATTGATGATGAACCCA
TGGTCGAGCAGAAGGAAAATGAGTCCATGGATACTTGAATGAAAGTATTA
AGCGGGGCTTGCCCTGACTCTGCATGCCAGAAACAGTTGTTTTTCTCTGA
AGAACACACAGCAACAATTGAATGTTCAAATTGTGGACAGCGTCACGAAA
TCAAACACCTTGTTAATGTAGAACAAGTGTCTGACCCAGGACATGCGCTT
CGTGGATTACTCCATAGCCTTGTTGAAGGACACATCCCTAGTCATGTTAA
AAAATCAAGTGAATTTGTCAAGGTTAAAGGATTGTCAAACTTTGGTTGCA
AACTAATTTCTCCATTACTTACAACTTATGGTTTAAAAGGACAAGAAGTT
CGTCTTTTGAAAGACATGAACCAAGGTGAAACATTTGACTGCTCTCACCT
GGCTGACCGAGCCTTCTTAATTGAAGAGCAAAATTTATTGATCCCAGGTT
ACGGTAAAGATACAGCTGCTAGTTACCTCCATGACACTCTGGATGAGATT
GCCAAAGTTAATGATAATGAGGAGAGATTAATACCAATCCATGCAGATGG
AGACGGCCATTGCTTGCCACATGCTATCTCCAGAGCTTTGGTTGGTCATG
AATTATTTTGGCATCCATTACTAACCAACTTGAAATTACATTTCATGAAC
CGCTTAGAAGACTATAAAAATTTGTTTAAAGATTTCATTGAGATTGAGGA
ATGGAAAGATATTATAGATGAAAGTGACCCTAATTTTGTTCCAAAGTATG
GTGAAATGCACGGTTTAAGAAATATTCATATCCTTGGACTTGCTAATATT
CTGCATCGTCCAGTAATTTTGATTGACAGTTTGGAAGGTATGAAATCGAA
AGGTGATTATAGTGGAGTGTTTCTCCCAGGGCTAGTTCCTATCGAAAAGT
GTAGAAACAAAAATGGCAAGCTTCATAAACCTATTGTTATTTCTTGGAGT
AGCAAAGGTCGCAACCATTTCATTCCACTTGTTGGCATCCAAAACAAGGA
ATTACCACGATTCCCAGCTAAAGTGTTACCTAAAGTATGGGGTCTTTCCC
AAAATCTTTTAACGGAGTATATCGATTTTGAGGATGAAGCTTGCATTATT
GGTGGTAATAACAGTCTACAGGAGAAATATTTGATCAAACTGACTCAAGC
TATGGAGAGACAATTTCTTCTGTTGAAAGGTGTAGCAACTAGTGTCGTCA
CAGATGTCTATCACCACCTTTTTCGATCATCTGGTCTTGTAGGGCTTCCT
CCGCAAACAATCACTGAAGCAGCTTTAGGTTTGACACGAGAGGAACGTCT
TTATAAATGTTTATATTGCCATGCGGTCATGGAAGAAAAATTGCCGTGTG
CTCATTCAATGTTGGAACCAGGGGGTGAACTCTTCCAAATTGCGATCAAA
ACACATGGGGTGCTGAAAGATAAATTCAAGTATAGATTCCCAGTTAACGA
TATTATATGCCAGTATGATAAACAATCAAACAGGTTGAAGTATGTACACA
CACCAGAATCATTGTCGTGCCCACACTGTAAAGGAGCTTTAAGGAAAGTC
AAACTTGATGGCAATCTGGAATATATGAATGGTGATCAACTATCCAAGTT
AGCTAATAACAGTTCTTGTGGTTGTGGTTACAAGCATTATTGGGACGGAA
AGGAGTATGATAACCTCCCTATCAAAATCCCTCTCGAACTTGAATGGGAT
GATGAAACAGTTGATGATCACGTCTATTGGTTCCAAAATGAATCTGATCC
TACTCTCAACTCAAATGCTTTTGAACTTGCCCGAGAGAAAGTCCAAGAAC
ATTTCCCAGGGACTTTCGGTAGTGAGAGATTAGCTGAGAAAATAGTGGAT
ACTATTTTTGAGTATACTACTGCGTATTACAAGGATACATCAGTCGAACC
AGAGGCAATGGAATTAGATGCACCAACATGTATCCCAACCAAGATTATCT
TAACTGGAGAAAAATCCAAAACTCTACACAAAGAAGAATTGGGTGCCAGT
CGTACTGAACGAATTATGAAAAAGAAAATCGAACATAAGGCGCCGATTCA
ACAAAAGAGAGCAAGCACCTCTAATCAAATGGACAAAGGTAATGAGACTA
ATGCTGTCAGTAACTCAACATCCAAATTATCCTCTGTGAAGGATCTAGGT
GATTCGCCTACCAGAGAAAAGGTTAAGAAATCTGAGACTACGATAAATAA
AATTCGTATTTCTTGCCAAGACAAAGGGAACACCATGTTCACATTAGAAT
CAACGACCTCCTTTGACAACTTGGTAAAATTTATCAAGAAACATTTCGAC
ATTGAGAATGAAGATATTACTATGAAATATGGGTTCCCTCCAAAGCCTCT
CAATCAAAATGAAAATAATCCTGAGGAACCTCTAACCATGCTCAAAGCTG
GAGATCGAGTTAATGTTATCATCGTCAAGAAGGTCAGAAAGGAGGACCCT
TTACCATCGAATGATACACGATCGAATCAGCAGAAATCAACACAACAACC
TACAACAGACAAAATGAGTCAATTCGCCAGCCAATTAGCTCAAATCATGG
GTCAGGACTTGTGGGAATGGGCTTGCTCCCAACGAAACATGTTCCAAGTT
AATGGTTGGATTTACAAAATGGCTTTTCGTGATCTGGGTCTTCTAACTGA
TGACCAGCATTTGTCATTACCTTGTTTCCCCAAGAAGATCTTTGTTTACA
ATAAGAAAGAGGATGAAATTTATCTATGTCTTGGTAAACATCATATTTTT
GTTCAACCTCTTACTCGCAAAGAAGAGGAGTTAGCGGCAGAGCAAGCTGA
AACTAAAGCTCATGAGCTGAAACCATCCATTCATCATGAGTTGAAACAAC
CTGCAAATCAACAACCAGAGACTGATAATTCACCGAAAGTGAACAATTTT
TCAGGTGAAGGTTATATGTTAGCTAACAATGAGAAAGCACCTGAAAATGT
TCGGACCATTCGACAAACAATTGATTTTGCAACTTTTGGACGCGAGGATA
AAACTATTGATGATGAACCCATGGTCGAGCAGAAGGAAAATGAGTCCATG
GATACTTGAATGAAAGTATTAAGCGGGGCTTGCCCTGACTCTGCATGCCA
GAAACAGTTGTTTTTCTCTGAAGAACACACAGCAACAATTGAATGTTCAA
ATTGTGGACAGCGTCACGAAATCAAACACCTTGTTAATGTAGAACAAGTG
TCTGACCCAGGACATGCGCTTCGTGGATTACTCCATAGCCTTGTTGAAGG
ACACATCCCTAGTCATGTTAAAAAATCAAGTGAATTTGTCAAGGTTAAAG
GATTGTCAAACTTTGGTTGCAAACTAATTTCTCCATTACTTACAACTTAT
GGTTTAAAAGGACAAGAAGTTCGTCTTTTGAAAGACATGAACCAAGGTGA
AACATTTGACTGCTCTCACCTGGCTGACCGAGCCTTCTTAATTGAAGAGC
AAAATTTATTGATCCCAGGTTACGGTAAAGATACAGCTGCTAGTTACCTC
CATGACACTCTGGATGAGATTGCCAAAGTTAATGATAATGAGGAGAGATT
AATACCAATCCATGCAGATGGAGACGGCCATTGCTTGCCACATGCTATCT
CCAGAGCTTTGGTTGGTCATGAATTATTTTGGCATCCATTACTAACCAAC
TTGAAATTACATTTCATGAACCGCTTAGAAGACTATAAAAATTTGTTTAA
AGATTTCATTGAGATTGAGGAATGGAAAGATATTATAGATGAAAGTGACC
CTAATTTTGTTCCAAAGTATGGTGAAATGCACGGTTTAAGAAATATTCAT
ATCCTTGGACTTGCTAATATTCTGCATCGTCCAGTAATTTTGATTGACAG
TTTGGAAGGTATGAAATCGAAAGGTGATTATAGTGGAGTGTTTCTCCCAG
GGCTAGTTCCTATCGAAAAGTGTAGAAACAAAAATGGCAAGCTTCATAAA
CCTATTGTTATTTCTTGGAGTAGCAAAGGTCGCAACCATTTCATTCCACT
TGTTGGCATCCAAAACAAGGAATTACCACGATTCCCAGCTAAAGTGTTAC
CTAAAGTATGGGGTCTTTCCCAAAATCTTTTAACGGAGTATATCGATTTT
GAGGATGAAGCTTGCATTATTGGTGGTAATAACAGTCTACAGGAGAAATA
TTTGATCAAACTGACTCAAGCTATGGAGAGACAATTTCTTCTGTTGAAAG
GTGTAGCAACTAGTGTCGTCACAGATGTCTATCACCACCTTTTTCGATCA
TCTGGTCTTGTAGGGCTTCCTCCGCAAACAATCACTGAAGCAGCTTTAGG
TTTGACACGAGAGGAACGTCTTTATAAATGTTTATATTGCCATGCGGTCA
TGGAAGAAAAATTGCCGTGTGCTCATTCAATGTTGGAACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062437-exon-scaffold_364-1575043694:337411..341194 | TCONS_00062437-exon-scaffold_364-1575043694:337411..341194 | Clytia hemisphaerica | exon |
| TCONS_00062437-exon-scaffold_364-1575043694:335117..337074 | TCONS_00062437-exon-scaffold_364-1575043694:335117..337074 | Clytia hemisphaerica | exon |
| TCONS_00062437-exon-scaffold_364-1510915933:337411..341194 | TCONS_00062437-exon-scaffold_364-1510915933:337411..341194 | Clytia hemisphaerica | exon |
| TCONS_00062437-exon-scaffold_364-1510915933:335117..337074 | TCONS_00062437-exon-scaffold_364-1510915933:335117..337074 | Clytia hemisphaerica | exon |
| TCONS_00062437-exon-scaffold_364-1491911889:337411..341194 | TCONS_00062437-exon-scaffold_364-1491911889:337411..341194 | Clytia hemisphaerica | exon |
| TCONS_00062437-exon-scaffold_364-1491911889:335117..337074 | TCONS_00062437-exon-scaffold_364-1491911889:335117..337074 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:335117..341194 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003323 | OTU_dom |
Blast
BLAST of TCONS_00062437 vs. Swiss-Prot (Human)
Match: VCIP1 (Deubiquitinating protein VCIP135 OS=Homo sapiens GN=VCPIP1 PE=1 SV=2) HSP 1 Score: 754.977 bits (1948), Expect = 0.000e+0 Identity = 429/1002 (42.81%), Postives = 606/1002 (60.48%), Query Frame = 1
Query: 2446 KKMKVLSGACPDSACQKQLFFSEEHTATIECSNCGQRHEIKHLVNVEQVSDPGHALRGLLHSLVEGHIPSHVKKSSEFVKVKGLSNFGCKLISPLLTTYGLKGQEVR--LLKDMNQGETFDCSHLADRAFLIEEQNLLIPGYGKDTAAS--YLHDTLDEIAKVNDNEERLIPIHADGDGHCLPHAISRALVGHELFWHPLLTNLKLHFMNRLEDYKNLFKXXXXXXXXXXXXXXXXPNFVPKYGEMHGLRNIHILGLANILHRPVILIDSLEGMKSKGDYSGVFLPGLVPIEKCRNKNGKLHKPIVISWSSKGRNHFIPLVGIQNKELPRFPAKVLPKVWGLSQNLLTEYIDF-EDEACIIGGNNSLQEKYLIKLTQAMERQFLLLKGVATSVVTDVYHHLFRSSGLVGLPPQTITEAALGLTREERLYKCLYCHAVMEEKLPCAHSMLEPGGELFQIAIKTHGVLKDKFKYRFPVNDIICQYDKQSNRLKYVHTPESLS-CPHCKG-ALRKVKLDGNLEYMNGDQLSKLANNSSCGCGYKHYWDGKEYDNLPIKIPLELEWDDETVDDHVYWFQNESDPTLNSNAFELAREKVQEHFPGTFGSERLAEKIVDTIFEYTTAYYKD--TSVEPEAMEL---------DAPTCIPTKIILTGEKSKTLHKEELGASRTERIMKKKIEHKAPIQQKRASTSNQMDKGNETNAVSNSTSKLSSVKDLGDSPTREKVKKSETTINKIRISCQDKGNTMFTLESTTSFDNLVKFIKKHFDIENEDITMKYGFXXXXXXXXXXXXXXXLTMLKAGDXXXXXXXXXXXXEDPLPSNDTRSNQQKSTQQPTTDKMSQFASQ------------LAQIMGQDLWEWACSQRNMFQVNGWIYKMAFRDLGLLTDDQHLSLPCFPKKIFVYNKKEDEIYLCLGKHHIF-----VQPLTRKEEELAAEQAETKAHELKPSIHHELKQPANQ--QPETDNSPKVNNFSGEGYMLAN 5340
+ ++LSG+CPD CQ +LFF + +IEC+ CGQRHE + L+ VE+V+DP L LL + + G + KK++E VKV GLSN+ CKL+SP+L YG+ Q R LL+DMNQGE FDC+ L DRAFLIE +++ GYGKD + S YLHDTL++I + N ++E LIP+H DGDGHCL HA+SRALVG ELFWH L NLK HF L Y+ LF DFI+ EW+DII+E DP FVP G GLRNIHI GLAN+LHRP+IL+DSL GM+S GDYS FLPGL+P EKC K+G L+KPI I+WSS GRNH+IPLVGI+ LP+ P +LPK WG+ Q+L+ +YI ED C+IGG+ SLQ+KYL++L AME F+ G+ S+V DV+ + +R +G++G+ P+ +T AA + RL+KCL C A+ E +P L PGG+L+ +A THG L+ Y FP+N+++C YD + L + +L+ C C G ++RKV+ DG++ Y++GD+ + + CGCG+KH+WDGKEYDNLP P+ LEW V + VYWFQ ESD +LNSN +++A + V +HFPG FGSE L +K+V TI T D T V + ++ + +PTKIILTG+K+KTLHKEEL S+TER +++ I +A + QKR + + ++ + VS ST + +PT+ + + KIRI+ D +M TL+S+T+F L + I + F+I ++YGFPPK L + E+ L+ GD I + K + E + ++ K T K+S Q LA +MG+D+W +A +MFQ G Y + + +G + D +H + P P K FVYN ED + LC+ F V+ L ++ +A T++ E PS H LK + + +++ V F G+G+ L
Sbjct: 40 RDRRILSGSCPDPKCQARLFFPASGSVSIECTECGQRHEQQQLLGVEEVTDPDVVLHNLLRNALLG-VTGAPKKNTELVKVMGLSNYHCKLLSPILARYGMDKQTGRAKLLRDMNQGELFDCALLGDRAFLIEPEHVNTVGYGKDRSGSLLYLHDTLEDIKRANKSQECLIPVHVDGDGHCLVHAVSRALVGRELFWHALRENLKQHFQQHLARYQALFHDFIDAAEWEDIINECDPLFVPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSSGDYSATFLPGLIPAEKCTGKDGHLNKPICIAWSSSGRNHYIPLVGIKGAALPKLPMNLLPKAWGVPQDLIKKYIKLEEDGGCVIGGDRSLQDKYLLRLVAAMEEVFMDKHGIHPSLVADVHQYFYRRTGVIGVQPEEVTAAAKKAVMDNRLHKCLLCGALSELHVP--PEWLAPGGKLYNLAKSTHGQLRTDKNYSFPLNNLVCSYDSVKDVLVPDYGMSNLTACNWCHGTSVRKVRGDGSIVYLDGDRTNSRSTGGKCGCGFKHFWDGKEYDNLPEAFPITLEWGGRVVRETVYWFQYESDSSLNSNVYDVAMKLVTKHFPGEFGSEILVQKVVHTILHQTAKKNPDDYTPVNIDGAHAQRVGDVQGQESESQLPTKIILTGQKTKTLHKEELNMSKTERTIQQNITEQASVMQKRKTEKLKQEQKGQPRTVSPSTIR-DGPSSAPATPTKAPYSPTTSKEKKIRITTNDGRQSMVTLKSSTTFFELQESIAREFNIPPYLQCIRYGFPPKELMPPQAGMEKEPVPLQHGD-RITIEILKSKAEGGQSAAAHSAHTVKQEDIAVTGKLSSKELQEQAEKEMYSLCLLATLMGEDVWSYAKGLPHMFQQGGVFYSIMKKTMG-MADGKHCTFPHLPGKTFVYNASEDRLELCVDAAGHFPIGPDVEDLVKEAVSQVRAEATTRSRESSPS-HGLLKLGSGGVVKKKSEQLHNVTAFQGKGHSLGT 1034
The following BLAST results are available for this feature:
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