TCONS_00062435 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062435
Unique NameTCONS_00062435
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1235

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062435 ID=TCONS_00062435|Name=TCONS_00062435|organism=Clytia hemisphaerica|type=transcript|length=1235bp
GTTACAGTAATAAAAAtacaacataaacaaaaaaataaacaagaatGGAT
TACAAGGAAGAACAAATTGGAGAAATTGAAGCTTTAGAGGCTATTTATTC
GGAAGAACTCGATATAATATCTGACGACCCGCACACGTTGGATGTGTTTG
TTTGTGGTTCCAATGAAGAAACGAATGATGATACAAAAGTCACAGTGTCA
GCAACGATACGATTCACCATGGTGGAGACTTACCCTGACGCTTCTCCCTT
GATGGAAATCATGGAAAATACAGACAATCTAACGGAAGAACTTTCAGAAG
CTCTCATTGCTCGTCTAGAAGAAGAGGCTACAGAAAATTTGGGTTGTGTG
ATGATTTTCACCCTGGTATCGGCTGCACAAGATTATATGTTACAACTGGT
TGAAGATATCAAAAATGGGATAGAAGAagagaaaaagaggaaaagGGAAG
AAGAACTCAGACTTGAAGAACTTAAATACAAAGGTACACCTGTTACACTG
GAGAACTTCTTGGCTTGGAAAGTTCGCTTTGATGAAGAAATGATCGCTTG
TGGGCGTCGTAAAATAACcgtcaaagaaataaaaaaagataaattgacTN
TCGCTTTGATGAAGAAATGATTGCTTGTGGGCGTCGTAAAATAACCgtca
aagaaattaaaaaagataaaTTGACTGGAAAACAGTTATTTGAAAGAGAC
TCAACCTTAAATGAATCGGACATTAAATTTTTAACGGACACGAGTTCAGT
CAAAGTTGACGAATCATTATTTCAAGACCTTGAAGACTTGGATCTTGATG
ATGAATTATTAGAATTAGAAGATGAATGAATggataaataaatgaataaa
tgaataaaaagggaaatttttatattttaggtGATAATCTTCAAATTGTG
TTTGTAACCTGATGTCATTCACAGGCCTCTTAGAGTCTTATTACGGGCTT
ACACCCAACCTTCTTTTGCGAGAAAATTAGGCTCTGCGTCTCAATTTTAC
TCGGAGAATCTTCAGTTGGCTTCAGtttctcattttctttattttcatat
tgATTATATACAAAAtagatatttattttttacttggaataaattttatt
actttctttcaaaaactttcttggTGACAGGGACATTATTATCATCATTA
TTGTGATAATAGATCATACTTAATAGATATTAGAATTGAATTgcagaaaa
atgtaaagttCTTAGAAATTGCATTTTCCAAAGTT
Run BLAST on NCBI

protein sequence of TCONS_00062435-protein

>TCONS_00062435-protein ID=TCONS_00062435-protein|Name=TCONS_00062435-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MDYKEEQIGEIEALEAIYSEELDIISDDPHTLDVFVCGSNEETNDDTKVT
VSATIRFTMVETYPDASPLMEIMENTDNLTEELSEALIARLEEEATENLG
CVMIFTLVSAAQDYMLQLVEDIKNGIEEEKKRKREEELRLEELKYKGTPV
TLENFLAWKVRFDEEMIACGRRKITVKEIKKDKLTXALMKK
Run BLAST on NCBI

transcript from alignment at scaffold_364:326345..328961-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062435 ID=TCONS_00062435|Name=TCONS_00062435|organism=Clytia hemisphaerica|type=transcript|length=2617bp|location=Sequence derived from alignment at scaffold_364:326345..328961- (Clytia hemisphaerica)
GTTACAGTAATAAAAATACAACATAAACAAAAAAATAAACAAGAATGGAT
TACAAGGAAGAACAAATTGGAGAAATTGAAGCTTTAGAGGCTATTTATTC
GGAAGAACTCGATAGTAAGCCTTTTTTCTCACGTTATCCTACATTAGCTA
CAACAAAAACTACATTCAAAGTGAAAAACCCATTCAATTTATTTTGGGGA
TTGAATATTTTTTGACTGAACAATACTCCATCTAAACCATTCTCAACTAA
TGAGTTTTCAGGGTTTTTCTTTATTTGAAAATGTGTTGCATTTTTCTAGA
CACACTGTATAGTCAACGCTTTCTAATTCGAACCTCCGTTCCTAAAATTA
TTTTGTAACGCACTGTTACGAAGAGCTCACCGTAATTTGTATCCTTTTAC
TGTTGTTTTTTTCCTCCCACAGTAATATCTGACGACCCGCACACGTTGGA
TGTGTTTGTTTGTGGTTCCAATGAAGAAACGAATGATGATACAAAAGTCA
CAGGTACCGTTTCATCAAGCAACTGACCTTTATATACCCTAGACCAAGCT
ATATCCGCCATCTTTGATTGGAGTATATTGAAAAGTGGTACCCTAATGCT
AATGGTAGCACTACTCAATGTGAATCAATTTATAATTCGATGAAATTGAT
GAATCATTTTTTCACCCAAATTGAATAGTTCTACGTTCTACTATTAGGGT
GCCACTTTAACAAAACTCCGATGAAAGATTTTGCTTTGCCGGTATCGAGA
AACTTTGTCCAGGCTACAAAAAGCTCAGTGGTTTTAACCTTTAGGAGAAG
ATTTCTCCCTTAGTGATACCTAACTAGCTGTCAATTAAATTGGTCGCAAT
AAAAAGCCTGTTTATTAGATTTCAAAGGTCGTAGTGATGGCAAAAATAGC
TGCAAAGATATTTGTAATTAGCTAGAATATCCTTTAGAGATTTCGTCCTC
CGAAAGAGGAGCCTCCGAGCCGACTCCGTCTGTGGTCACAAGCCTCACTT
ACTAGACACGACGGAGGTGGCTCACATCACTGAATACAATAAAATTTTCG
TTTTCCATTCTTCAGTGTCAGCAACGATACGATTCACCATGGTGGAGACT
TACCCTGACGCTTCTCCCTTGATGGAAATCATGGAAAATACAGACAATCT
AACGGAAGAACTTTCAGAAGCTCTCATTGCTCGTCTAGAAGAAGAGGTAA
AATGGTTTTTACTAATTCTTCCAATATTAAAATCTAGATTGGCCTGTCTT
TGTATTAGTTTTAATTTTCCTTTGAGTTATTCATTCGGTTAAGTTTTTTA
AATGTGATTTGAATTCTGCATACACTAGAAGTTCGAGTGAATTATAAAGC
TAAAGTAAATTACACCAGCCGAAATTGTACTGAAACTGAAATTACGCACA
TCATTTTTCAGGCTACAGAAAATTTGGGTTGTGTGATGATTTTCACCCTG
GTATCGGCTGCACAAGATTATATGTTACAACTGGTTGAAGATATCAAAAA
TGGGATAGAAGAAGAGAAAAAGAGGAAAAGGGAAGAAGAACTCAGACTTG
AAGAACTTAAAGTAAATATATTTTCCATTTTGGCTTTCTTTGGTTGAGTT
TACTTTGGTGTGCCATGTTTTATATTTGGAAAGGTCTTAGGAACAAAAAC
GACTCCTGAATTGATTTTGAAGGAAATATTTCTATCCTTCTTTCTTTTCT
TTTTTTCCTCCTCTTTTGTGAGAAATGATCGGCTTACCTATCTCAAGATC
CTTCGAGAGAAATTGTTCGTGGAAAGCTTTCGCCGCTTACTGAAAATATT
TTACATATTTTATTGTACTTGATAAGATTTTCATTTCATATTTTCTTCTC
TCATTCAGTACAAAGGTACACCTGTTACACTGGAGAACTTCTTGGCTTGG
AAAGTTCGCTTTGATGAAGAAATGATCGCTTGTGGGCGTCGTAAAATAAC
CGTCAAAGAAATAAAAAAAGATAAATTGACTNTCGCTTTGATGAAGAAAT
GATTGCTTGTGGGCGTCGTAAAATAACCGTCAAAGAAATTAAAAAAGATA
AATTGACTGGAAAACAGTTATTTGAAAGAGACTCAACCTTAAATGAATCG
GACATTAAATTTTTAACGGACACGAGTTCAGTCAAAGTTGACGAATCATT
ATTTCAAGACCTTGAAGACTTGGATCTTGATGATGAATTATTAGAATTAG
AAGATGAATGAATGGATAAATAAATGAATAAATGAATAAAAAGGGAAATT
TTTATATTTTAGGTGATAATCTTCAAATTGTGTTTGTAACCTGATGTCAT
TCACAGGCCTCTTAGAGTCTTATTACGGGCTTACACCCAACCTTCTTTTG
CGAGAAAATTAGGCTCTGCGTCTCAATTTTACTCGGAGAATCTTCAGTTG
GCTTCAGTTTCTCATTTTCTTTATTTTCATATTGATTATATACAAAATAG
ATATTTATTTTTTACTTGGAATAAATTTTATTACTTTCTTTCAAAAACTT
TCTTGGTGACAGGGACATTATTATCATCATTATTGTGATAATAGATCATA
CTTAATAGATATTAGAATTGAATTGCAGAAAAATGTAAAGTTCTTAGAAA
TTGCATTTTCCAAAGTT

Coding sequence (CDS) from alignment at scaffold_364:326345..328961-

>TCONS_00062435 ID=TCONS_00062435|Name=TCONS_00062435|organism=Clytia hemisphaerica|type=CDS|length=2880bp|location=Sequence derived from alignment at scaffold_364:326345..328961- (Clytia hemisphaerica)
TACAAAGGTACACCTGTTACACTGGAGAACTTCTTGGCTTGGAAAGTTCG
CTTTGATGAAGAAATGATCGCTTGTGGGCGTCGTAAAATAACCGTCAAAG
AAATAAAAAAAGATAAATTGACTNTCGCTTTGATGAAGAAATGAGCTACA
GAAAATTTGGGTTGTGTGATGATTTTCACCCTGGTATCGGCTGCACAAGA
TTATATGTTACAACTGGTTGAAGATATCAAAAATGGGATAGAAGAAGAGA
AAAAGAGGAAAAGGGAAGAAGAACTCAGACTTGAAGAACTTAAATGTCAG
CAACGATACGATTCACCATGGTGGAGACTTACCCTGACGCTTCTCCCTTG
ATGGAAATCATGGAAAATACAGACAATCTAACGGAAGAACTTTCAGAAGC
TCTCATTGCTCGTCTAGAAGAAGAGTAATATCTGACGACCCGCACACGTT
GGATGTGTTTGTTTGTGGTTCCAATGAAGAAACGAATGATGATACAAAAG
TCACAGATGGATTACAAGGAAGAACAAATTGGAGAAATTGAAGCTTTAGA
GGCTATTTATTCGGAAGAACTCGATATACAAAGGTACACCTGTTACACTG
GAGAACTTCTTGGCTTGGAAAGTTCGCTTTGATGAAGAAATGATCGCTTG
TGGGCGTCGTAAAATAACCGTCAAAGAAATAAAAAAAGATAAATTGACTN
TCGCTTTGATGAAGAAATGAGCTACAGAAAATTTGGGTTGTGTGATGATT
TTCACCCTGGTATCGGCTGCACAAGATTATATGTTACAACTGGTTGAAGA
TATCAAAAATGGGATAGAAGAAGAGAAAAAGAGGAAAAGGGAAGAAGAAC
TCAGACTTGAAGAACTTAAATGTCAGCAACGATACGATTCACCATGGTGG
AGACTTACCCTGACGCTTCTCCCTTGATGGAAATCATGGAAAATACAGAC
AATCTAACGGAAGAACTTTCAGAAGCTCTCATTGCTCGTCTAGAAGAAGA
GTAATATCTGACGACCCGCACACGTTGGATGTGTTTGTTTGTGGTTCCAA
TGAAGAAACGAATGATGATACAAAAGTCACAGATGGATTACAAGGAAGAA
CAAATTGGAGAAATTGAAGCTTTAGAGGCTATTTATTCGGAAGAACTCGA
TATACAAAGGTACACCTGTTACACTGGAGAACTTCTTGGCTTGGAAAGTT
CGCTTTGATGAAGAAATGATCGCTTGTGGGCGTCGTAAAATAACCGTCAA
AGAAATAAAAAAAGATAAATTGACTNTCGCTTTGATGAAGAAATGAGCTA
CAGAAAATTTGGGTTGTGTGATGATTTTCACCCTGGTATCGGCTGCACAA
GATTATATGTTACAACTGGTTGAAGATATCAAAAATGGGATAGAAGAAGA
GAAAAAGAGGAAAAGGGAAGAAGAACTCAGACTTGAAGAACTTAAATGTC
AGCAACGATACGATTCACCATGGTGGAGACTTACCCTGACGCTTCTCCCT
TGATGGAAATCATGGAAAATACAGACAATCTAACGGAAGAACTTTCAGAA
GCTCTCATTGCTCGTCTAGAAGAAGAGTAATATCTGACGACCCGCACACG
TTGGATGTGTTTGTTTGTGGTTCCAATGAAGAAACGAATGATGATACAAA
AGTCACAGATGGATTACAAGGAAGAACAAATTGGAGAAATTGAAGCTTTA
GAGGCTATTTATTCGGAAGAACTCGATATACAAAGGTACACCTGTTACAC
TGGAGAACTTCTTGGCTTGGAAAGTTCGCTTTGATGAAGAAATGATCGCT
TGTGGGCGTCGTAAAATAACCGTCAAAGAAATAAAAAAAGATAAATTGAC
TNTCGCTTTGATGAAGAAATGAGCTACAGAAAATTTGGGTTGTGTGATGA
TTTTCACCCTGGTATCGGCTGCACAAGATTATATGTTACAACTGGTTGAA
GATATCAAAAATGGGATAGAAGAAGAGAAAAAGAGGAAAAGGGAAGAAGA
ACTCAGACTTGAAGAACTTAAATGTCAGCAACGATACGATTCACCATGGT
GGAGACTTACCCTGACGCTTCTCCCTTGATGGAAATCATGGAAAATACAG
ACAATCTAACGGAAGAACTTTCAGAAGCTCTCATTGCTCGTCTAGAAGAA
GAGTAATATCTGACGACCCGCACACGTTGGATGTGTTTGTTTGTGGTTCC
AATGAAGAAACGAATGATGATACAAAAGTCACAGATGGATTACAAGGAAG
AACAAATTGGAGAAATTGAAGCTTTAGAGGCTATTTATTCGGAAGAACTC
GATATACAAAGGTACACCTGTTACACTGGAGAACTTCTTGGCTTGGAAAG
TTCGCTTTGATGAAGAAATGATCGCTTGTGGGCGTCGTAAAATAACCGTC
AAAGAAATAAAAAAAGATAAATTGACTNTCGCTTTGATGAAGAAATGAGC
TACAGAAAATTTGGGTTGTGTGATGATTTTCACCCTGGTATCGGCTGCAC
AAGATTATATGTTACAACTGGTTGAAGATATCAAAAATGGGATAGAAGAA
GAGAAAAAGAGGAAAAGGGAAGAAGAACTCAGACTTGAAGAACTTAAATG
TCAGCAACGATACGATTCACCATGGTGGAGACTTACCCTGACGCTTCTCC
CTTGATGGAAATCATGGAAAATACAGACAATCTAACGGAAGAACTTTCAG
AAGCTCTCATTGCTCGTCTAGAAGAAGAGTAATATCTGACGACCCGCACA
CGTTGGATGTGTTTGTTTGTGGTTCCAATGAAGAAACGAATGATGATACA
AAAGTCACAGATGGATTACAAGGAAGAACAAATTGGAGAAATTGAAGCTT
TAGAGGCTATTTATTCGGAAGAACTCGATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039106XLOC_039106Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062435-exon-scaffold_364-1575043694:328848..328961TCONS_00062435-exon-scaffold_364-1575043694:328848..328961Clytia hemisphaericaexon
TCONS_00062435-exon-scaffold_364-1575043694:328459..328539TCONS_00062435-exon-scaffold_364-1575043694:328459..328539Clytia hemisphaericaexon
TCONS_00062435-exon-scaffold_364-1575043694:327766..327896TCONS_00062435-exon-scaffold_364-1575043694:327766..327896Clytia hemisphaericaexon
TCONS_00062435-exon-scaffold_364-1575043694:327401..327550TCONS_00062435-exon-scaffold_364-1575043694:327401..327550Clytia hemisphaericaexon
TCONS_00062435-exon-scaffold_364-1575043694:326345..327103TCONS_00062435-exon-scaffold_364-1575043694:326345..327103Clytia hemisphaericaexon
TCONS_00062435-exon-scaffold_364-1510915933:328848..328961TCONS_00062435-exon-scaffold_364-1510915933:328848..328961Clytia hemisphaericaexon
TCONS_00062435-exon-scaffold_364-1510915933:328459..328539TCONS_00062435-exon-scaffold_364-1510915933:328459..328539Clytia hemisphaericaexon
TCONS_00062435-exon-scaffold_364-1510915933:327766..327896TCONS_00062435-exon-scaffold_364-1510915933:327766..327896Clytia hemisphaericaexon
TCONS_00062435-exon-scaffold_364-1510915933:327401..327550TCONS_00062435-exon-scaffold_364-1510915933:327401..327550Clytia hemisphaericaexon
TCONS_00062435-exon-scaffold_364-1510915933:326345..327103TCONS_00062435-exon-scaffold_364-1510915933:326345..327103Clytia hemisphaericaexon
TCONS_00062435-exon-scaffold_364-1491911889:328848..328961TCONS_00062435-exon-scaffold_364-1491911889:328848..328961Clytia hemisphaericaexon
TCONS_00062435-exon-scaffold_364-1491911889:328459..328539TCONS_00062435-exon-scaffold_364-1491911889:328459..328539Clytia hemisphaericaexon
TCONS_00062435-exon-scaffold_364-1491911889:327766..327896TCONS_00062435-exon-scaffold_364-1491911889:327766..327896Clytia hemisphaericaexon
TCONS_00062435-exon-scaffold_364-1491911889:327401..327550TCONS_00062435-exon-scaffold_364-1491911889:327401..327550Clytia hemisphaericaexon
TCONS_00062435-exon-scaffold_364-1491911889:326345..327103TCONS_00062435-exon-scaffold_364-1491911889:326345..327103Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062435-proteinTCONS_00062435-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:326345..328961 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
68.7424	64.9441	26.5449	29.0727	23.9219	17.5768	32.5865	32.5881	28.0898	29.9934	22.0006	18.8149	17.1099	15.1178	19.36	18.1845	25.9062	20.4868	10.329	12.7702	16.7163	18.0522	45.2375	39.8659	22.0155	26.9377	16.026	12.0938	24.3327	24.361
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006575RWD-domain
IPR016135UBQ-conjugating_enzyme/RWD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00062435 vs. Swiss-Prot (Human)
Match: RWDD1 (RWD domain-containing protein 1 OS=Homo sapiens GN=RWDD1 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.136e-29
Identity = 74/180 (41.11%), Postives = 112/180 (62.22%), Query Frame = 3 
Query:   48 DYKEEQIGEIEALEAIYSEELDIISDDPHTLDVFV---CGSNEETNDDTKVTVSATIRFTMVETYPDASPLMEIMENTDNLTEELSEALIARLEEEATENLGCVMIFTLVSAAQDYMLQLVEDIKNGIXXXXXXXXXXXXXXXXXXYKGTPVTLENFLAWKVRFDEEMIACGRRKITVKE 578
            DY EEQ  E+EALE+IY +   ++S++P +  + V    G N+E       TV  T++FT  E YPD +PL EI  + +NL +     ++  L  +A ENLG VMIFTLV+A Q+ + ++V+ IK   EEEKK+K +E    E+  + GTPVT+ENFL WK +FD E++   ++++  +E
Sbjct:    3 DYGEEQRNELEALESIYPDSFTVLSENPPSFTITVTSEAGENDE-------TVQTTLKFTYSEKYPDEAPLYEIF-SQENLEDNDVSDILKLLALQAEENLGMVMIFTLVTAVQEKLNEIVDQIKTRREEEKKQKEKEAEEAEKQLFHGTPVTIENFLNWKAKFDAELLEIKKKRMKEEE 174
The following BLAST results are available for this feature:
BLAST of TCONS_00062435 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RWDD13.136e-2941.11RWD domain-containing protein 1 OS=Homo sapiens GN... [more]
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