TCONS_00062433 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00062433
Unique Name	TCONS_00062433
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2046

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_364:306967..311824-

transcript sequence

>TCONS_00062433 ID=TCONS_00062433|Name=TCONS_00062433|organism=Clytia hemisphaerica|type=transcript|length=2046bp
TTCACGGAAAAGGAACTATCTAGTGGGTGCATCGTCATTTTTATTTAAAC
AGAATTACTTGAGTCAGAGTGACACACACTTTTAGTTCTAATCACTCAAC
AAAcgaaatgaaatttattttaccTTTCATTTTGGTTAGCTTTGAAGTGC
TCTCCGTCGTTTTTGGAAAGCCAATCAAAGGAAAGCATAACGGGAAGAAT
GCATTCgaagaaattgaatttgtcaatACGCATACCAAAGAGCAAATTGG
ATCGGaaaaagAGCTTTTCGAAGAAGACATTAACTTTGAAAATGACTCTG
AAATCGAAAGATTAGCTCAtcataaaatgacgtcaccagaGCGACAACGA
CGTGACGTCATCACTGGACCATATGCATGGCCAAATGGGAAGGCTCCTTA
CGTATTTGCTAATGATTACCCCTGGTACAGCAAATACTTGGTGAGGTCGT
CCATGgatgaaattcaaaaagtcagtTGTGTTCAATTTGTTGAAAGAACC
AATGAAAAAGATTACATCAAGATCTTTGATGACAAATTGTGCTATTCATC
CATTGGTAAACGGGGCTCGAATCAAACGTTATCTCTGGGAGACAATTGTC
TTTCAGACTCGATCATTCAACATGAATTATTTCACGCCCTTGGTTTTTTT
CATGAACAATCGAGGCTAGAAAGAGATTCATTTGTTACCGTGCACTGGGA
TAATATTATCAAAGgAAAAGAACACAATTTCCAGAAATACAAAATCGGTG
AAGCTCATCATTTGAATGAAGCCTATGACGAAAAATCCATTATGCATTAT
TCAAATTACATCTTTGCGATTGACAAGAATAAAATGACGATCTCATCGAA
AGCAAATCCGACGAAATTCCTCGGAGGATTTCAAATGACCGACACGGACG
TTCGACAGTTGAACAAATTTTACAACTGCCCATGTGCAGATCATATGTTC
GGCTGTGAGTTTATTACAAGCATGTGTGGACTGTTAAGGACTCAGCAGTA
CTGTCAGAAAAGTTGTGGCTTTTGCAGAAACTCGCCGAACCCTCCGACAA
GACCTTTACCGACTACTTTGACGATAACGACCATGCCTACAACTACAACG
AACACCCCTATGATAACAACGACCACTTCGACTACAAGAACAACCACCAC
TACTAAAACAACGACCACctcaaccacaacaacaacaaccactccaacta
caacaacgactaCCCCGACTACAACAACCACCACTAGAACAACCACCCCG
TTCACAACAACAAGGACCACTCCAACTGCTACAACCCTGACCACCCCAAT
CACACCAACAACTCTCCCTACTACCACAACGACTATCCctactacaacaa
cgaccactccaacGACaacaacgaccactccaacTATAATAACCGCCACC
CCTacgacaacaacgaccaccccgactacaacaacgaccactccaacTAC
AACAACAAAGGCTTCTTGTGTGAACAAACATCCTAAATGTTGGCTTTGGT
CCTACGTGAACACAGTATGTTTCCAATGGCAGGGTTGTTGTCACAATAGC
CAATACGGTGCTTGGATGCGTGAAAATTGCGCTTGGGCTTGCGGTCTCTG
TTCACCCTTTATCATTGGATAAAAGATAAGCCATACACGTAAATTATGTC
ACGCACTTGTTTTGAACAGTACGTTTGGTACAgtgaaatatattttaaga
tGTTCAGTCGTGTACACAACcgtcttttttatgaaaataaaatgagatTA
ATTATTTTAGggactttaaaggttttgtttttaaataagagtgttATCGT
TTACTCATCAATATTAATTtccaagctttttcacattgaattgacacaga
tgtggagcaagaacattttttgcttaactaagcataataaaacaataggg
aggacactgtcctgatatgaaatatgtgtctgatatgaaacggggacatt
tatgtaaaaataaaacctttaaatagtATCAGGAGAATTCTTTGTTTGTC
TTATATGTATAtcattcttataagaaaaaataattctttacaACGA

Run BLAST on NCBI

transcript from alignment at scaffold_364:306967..311824-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00062433 ID=TCONS_00062433|Name=TCONS_00062433|organism=Clytia hemisphaerica|type=transcript|length=4858bp|location=Sequence derived from alignment at scaffold_364:306967..311824- (Clytia hemisphaerica)
TTCACGGAAAAGGAACTATCTAGTGGGTGCATCGTCATTTTTATTTAAAC
AGAATTACTTGAGTCAGAGTGACACACACTTTTAGTTCTAATCACTCAAC
AAACGAAATGAAATTTATTTTACCTTTCATTTTGGTTAGCTTTGAAGGTA
GGTCTTACATTTCACTTTCTCGGTATCAACTGCAATATTGGTCACGATTT
AGAGCCAAAGAATAATTACAAAAGTCAATGTTCCGGATACATGAATCAGC
CTAATCAGCAAAAAATGAATTATTTTCAGGGCTTTTACTTGTTTTTGATA
GGCTGGCGAATAAAAATTAACTCTGGTGAATTCTAGATTCTGGGCCGGCA
AATTCTCCGCAAACTCAGTGTATTGTTTAAACTATGTGAGTCTAAGACGA
ATCACTAACTAAGAAAAAAGCCCAAAGCCGAAAAAAATTCGCAAACGGAT
TTTTTGCCGAAAAGAGTTTACACTCGGTAGAGTTGCCAGTCTTCTTCGAA
ACTCTCCCGCCGATTTTTTCCCGTTTACCGCCATAACGCTATACCGCCAT
ATATTCCCGCAAGTTTACTATCACTGTAACGGACGATAACATCGTCTATG
TATTGTTTAGCGTGAGTATGGTCTTTGGGCTGCGAACCGAATTTTTAGAC
CAGCGAATTATAATTTTTTTCATGCTTTGGATCGACAAAAATCGCCTTTC
GACGGCCTTAATGAAAATCCCTGTTTTATTTCCCTCCCGTTTAACTTTTT
AGTGCTCTCCGTCGTTTTTGGAAAGCCAATCAAAGGAAAGCATAACGGGA
AGAATGCATTCGAAGAAATTGAATTTGTCAATACGCATACCAAAGAGCAA
ATTGGATCGGGTCAGTATTATGTATTTTAAACGTTTTCTTCACTGGTAAC
ACATCTAAAAGGGGTTTGACTTTTGTGACGGAGTGTGTTTCAGTTCGATA
TTTATTGTGGAGAAATAAAAAAATCTCCGGCTGTCTTTCAGATTACAGAT
AGATTGATAGGTATATTCAACCAAAAAATTTATTTTTGTTTAGAAAAAGA
GCTTTTCGAAGAAGACATTAACTTTGAAAATGACTCTGAAATCGAAAGAT
TAGCTCATCATAAAATGACGTCACCAGAGCGACAACGACGTGACGTCATC
ACTGGACCATATGCATGGCCAAATGGGAAGGCTCCTTACGTATTTGCTAA
TGATTACCGTAAGTCTTTTTAAAACGAGGCTATGGAACATGTCTTATGAT
ACAAAACACACGTGCCATACTAATTGACCCAATTACTCTGTAAAAATCTG
ACTAGACTATTCGGGCTTGTAGCCTGCGGATTAAACCAACACGAAATTCA
TATCGAGGTTTTTTCATATTTTTAAGTTACGTAACATCTGTAATTTTGGA
AGCAAACGAATCTATGGAGTCAATTCTTTACCCAAATCAAATGTTTGTTT
CCATAATGACTGACTTAACAAAACTTGAAAGCTCTATAATCTCTATACTT
GATTGACGAATCTTACTCCCCATTCATTCCCCATTCATTCCCCATTTTCC
CTCATTTTCAATGGTTTTAATTTTGTTTAGCCTGGTACAGCAAATACTTG
GTGAGGTCGTCCATGGATGAAATTCAAAAAGTCAGTTGTGTTCAATTTGT
TGAAAGAACCAATGAAAAAGATTACATCAAGATCTTTGATGACAAATTGT
AATAAATGCTTTTATGTACTTTAAGCTCGATTTTACTATATTTTTTGCAA
GGCCCGGCTGTTTTCTTTATTTTCCAGCTCCACGTAACATATGTTTTTGC
GATTCATGTTTAATTTTTTGTAACCTTTAAGATGATAGTATAGGTAGCCG
TCCCCCACAAATTAATAGAAATACACAAATCCAATTGCGAGCACAAAAAA
TGACTTGGGACTTTGTGTTAGGTACTAATAATACGAGCTTTAAAGTCTTG
AAGGGTTAAAATGAAAACCTTTGCATTGAATTTTAAACAATGTCTTTTTT
CCAGGTGCTATTCATCCATTGGTAAACGGGGCTCGAATCAAACGTTATCT
CTGGGAGACAATTGTCTTTCAGACTCGATCATTCAACATGAATTATTTCA
CGCCCTTGGTTTTTTTCATGAACAATCGAGGCTAGAAAGAGATTCATTTG
TTACCGTGCACTGGGATAATATTATCAAAGGTAAGAAGGGGTGGTGAGAA
ATGCTTTGGTTTTAATTTCTAGCCTAAAAAAATTGAACTCACGCAAATTT
GAAATTCGCTGAAGACAATTCCTGATTACTTGGAGCTGATTGGTCTTAAA
TCTTTTTTTTGTTTCTAGGAAAAGAACACAATTTCCAGAAATACAAAATC
GGTGAAGCTCATCATTTGAATGAAGCCTATGACGAAAAATCCATTATGCA
TTATTCAAAGTGAGTAAACTCATTGAAATGTCTTTTTGATTATTTTTCTA
CTTACCCTTTACGGTGACAGAAAATTTTCCCTCGGAAATATCCCCAGGAG
ATTTGCCCCCCGGAACATTCCACGTTCAAATGTTTTAAAAAAATATCGGA
TATAATTATGCACAATCCTTTAAGAAAATCTCATAATCTCAATATGCAGG
TCAAATTTTATGCACTGGAAAAAATCCCAGGGTGGGACCCGATTCGTTGT
TCACACGTGTGTGAAAAGGTAATTAACACCCTATGTGATTACACCTCGTT
GAATCAATTATCAAACTAAACGCTCTAACTAATCTGCAATCACAGTCTGA
CTTAATTCTTCTTGAAATTTGAGGTGTTTTAGTCTAATTCCTAATTTAAC
ATGGTGTAAACACTAAAGGTGTAATTTACTATTTCACACTCGTGTGAAAA
ACGAACCGAGTCCCATCCTAGATAATTGATTTTTACACAAGTGTGATTTT
TAACAATTTCTTCGTGTGAGGGCAACTTTCCGGGGAATTTTCTCTTTACC
TTCCTATCCACTTTCCGTTTCCTGGGAAAATTTTCCGATCTTTGCTCTCT
CTTCAACAGATAAAGACCAAGCCTCCGGTTAGTTTGATAATTGTTTCATT
TTAGCCAACTTGAATGTTATTCTCTCACATGTTTTACCTTAGTTACATCT
TTGCGATTGACAAGAATAAAATGACGATCTCATCGAAAGCAAATCCGACG
AAATTCCTCGGAGGATTTCAAATGACCGACACGGACGTTCGACAGTTGAA
CAAATTTTACAACTGCCCATGTGCAGATCATATGTTCGGCTGTGAGTTTA
TTACAAGCATGTGTGGACTGTTAAGGACTCAGCAGTACTGTCAGAAAAGT
TGTGGCTTTTGCAGAAACTCGCCGAACCCTCCGACAAGACCTTTACCGAC
TACTTTGACGATAACGACCATGCCTACAACTACAACGAACACCCCTATGA
TAACAACGACCACTTCGACTACAAGAACAACCACCACTACTAAAACAACG
ACCACCTCAACCACAACAACAACAACCACTCCAACTACAACAACGACTAC
CCCGACTACAACAACCACCACTAGAACAACCACCCCGTTCACAACAACAA
GGACCACTCCAACTGCTACAACCCTGACCACCCCAATCACACCAACAACT
CTCCCTACTACCACAACGACTATCCCTACTACAACAACGACCACTCCAAC
GACATTAATGACCCCAAAAAGGTCATGTTTTGATGCCCTCAAATGTTGTC
CGGAACTAGCAGCTCACGGTTTATGCAAGATCAGTAAATATATTCAAGAT
GCTTGTGAAAACTCTTGCCACGAGGAATGTATTTTAAAAACCACAAAAAC
GTCTACTATCCTTAAAACTACTACAATTACTACGCCGAAAACAGCAACGA
CCACCCCTTCTACAATAACGACCACCCCTTCTATAATAACGACCACCCCT
ACTACAACAACGACCACTCCAATCACAACAACGACCACCCCGACTACAAC
AACGACCACCCCGACTACAACAACGACCAACCCTTTCATAACAACGATCA
TCCCTACTACAACAACGACCACCCCTACTACAACAACGACCACTCCAACT
ATAATAACGGCCACCCCTACGACAACAACGACCACCCCGACTACAACAAC
GACCACTCCAACTATAATAACGGCCACCCCTACGACAACAACGACCACCC
CGACTACAACAACAACCACCCCGACTACAACAACGACCACTCCAACTATA
ATAACCGCCACCCCTACGACAACAACGACCACCCCGACTACAACAACGAC
CACTCCAACTACAACAACAAAGGCTTCTTGTGTGAACAAACATCCTAAAT
GTTGGCTTTGGTCCTACGTGAACACAGTATGTTTCCAATGGCAGGGTTGT
TGTCACAATAGCCAATACGGTGCTTGGATGCGTGAAAATTGCGCTTGGGC
TTGCGGTCTCTGTTCACCCTTTATCATTGGATAAAAGATAAGCCATACAC
GTAAATTATGTCACGCACTTGTTTTGAACAGTACGTTTGGTACAGTGAAA
TATATTTTAAGATGTTCAGTCGTGTACACAACCGTCTTTTTTATGAAAAT
AAAATGAGATTAATTATTTTAGGGACTTTAAAGGTTTTGTTTTTAAATAA
GAGTGTTATCGTTTACTCATCAATATTAATTTCCAAGCTTTTTCACATTG
AATTGACACAGATGTGGAGCAAGAACATTTTTTGCTTAACTAAGCATAAT
AAAACAATAGGGAGGACACTGTCCTGATATGAAATATGTGTCTGATATGA
AACGGGGACATTTATGTAAAAATAAAACCTTTAAATAGTATCAGGAGAAT
TCTTTGTTTGTCTTATATGTATATCATTCTTATAAGAAAAAATAATTCTT
TACAACGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_039105	XLOC_039105	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_364	supercontig	scaffold_364:306967..311824 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.269873	0	0	0	0	0.238862	0	1.95037e-06	1.08647e-09	0.0566356	0	0.338366	3.58091	3.35021	0.760163	1.60319e-06	3.38309e-09	0	0	0.0150679	0	0	0	0	0	8.22793e-10	0	0	0	0

Blast

[Close]

BLAST of TCONS_00062433 vs. Swiss-Prot (Human)
Match: MEP1B (Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 2.861e-35
Identity = 86/260 (33.08%), Postives = 142/260 (54.62%), Query Frame = 3

Query:  249 GSEKELFEEDIN-------FENDSEIERLAHHKMTSPERQRRDVITGPYAWPNGKAPYVFANDYPWYSKYLVRSSMDEIQKVSCVQFVERTNEKDYIKIFDDKLCYSSIG-KRGSNQTLSLGDNCLSDSIIQHELFHALGFFHEQSRLERDSFVTVHWDNIIKGKEHNFQKYKIGEAHHLNEAYDEKSIMHYSNYIFAIDKNKMTISSKANPTKFLGGFQM--TDTDVRQLNKFYNCPCA-DHMFGCEF-ITSMCGLLRT 992
            G ++++F  DIN       FE D  ++R          + R  +I   Y WP+   PYV  +     +K ++ ++ +  +  +C+ F     E +YI +F    C+SS+G +R   Q LS+G NC   + +QHE  HALGF+HEQSR +RD +V + WD I+ G+EHNF  Y    +  LN  YD  S+MHYS   F  +  + TI ++ +  + + G +M  +D+D+ +LN+ YNC  +   M  C F + ++CG++++
Sbjct:   32 GMDQDIF--DINEGLGLDLFEGDIRLDR---------AQIRNSIIGEKYRWPH-TIPYVLEDSLEMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVFKGSGCWSSVGNRRVGKQELSIGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQ-NGTEPTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSSSLSFMDSCSFELENVCGMIQS 278

The following BLAST results are available for this feature:

BLAST of TCONS_00062433 vs. Swiss-Prot (Human)

BLAST of TCONS_00062433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MEP1B	2.861e-35	33.08	Meprin A subunit beta OS=Homo sapiens GN=MEP1B PE=...	[more]

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TCONS_00062433 (transcript) - C. hemisphaerica