TCONS_00062423 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062423
Unique NameTCONS_00062423
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062423 ID=TCONS_00062423|Name=TCONS_00062423|organism=Clytia hemisphaerica|type=transcript|length=2568bp
CTGGCGAAAATTTACCTATCTTTCCAATCATTGGTTCAAACAGAAAAGCA
TCTGTGTTTTCCTTTACTTCTGAAAACACACGCATCACTTGCAGGCTCCA
CCTACCTTGGTTTTGACGTCAAAGATGCAACTCTGGTCGCTTCTGGAACG
AAATGCGGAGAAGGAAAGGTGTGTCATGAGAAGCGTTGTATCAATGTTAC
AGACCTTCAACAATCGAAGTGCGTTTCAAAATGTCCACCTGACAAAGTGT
GTAGCAACGAAGGAGTGTGTCGGTGTTTGTACAGTTTGGACAATGTAACG
TGTATCAACCCTCCTCCCCTGCAACGAAAAGCTGTTGAAGGAGAAATTAA
AGATGATTCAAACAGCAACACTTTGATCGGTGTTTTAGTCACCCTGATAA
TCCTCCTCCTCTTGTTGATTGTCATTTTGTTCTTCAAAAGGAAATCAATA
CAAGCCTTCTTATTGAGACGAAAGTTGAGTTGCGCAAGCTCAGCAATAAC
CGCGTTAGCTGATTCCAATAACAACCAATCAGCGTCTACCATTGTCGATA
TGGACCAATCAGATGCTTCGTTCAAAGAAAAACCATCCCTGACTAATAAG
CGGAAGATCAGTTTCGCTTCCAAGTTGTTTGTTGAAATCAGTTCCGTAAG
CAGTGGTTTCCGAAATCCTTTGAAGTCTATTGATGTTACCAAAAGGTTGA
ACGAACTTGGTAAAGAATCAATGGTTGACGATCCTACTGTTTCTGGTAAT
GTTGGTAAAGCACCAAAAGTACATTGCGATTCTCTTACAGATACTGAAAA
TATGCCCAAAAATCTCGAGCAAAGTGGAAATGAAGTAAGCTCACTTGTTA
AATCTGCTAATCCTATCCTTGTTAGAGAATCTAGCGTTGATCAAGATCCA
GAGAGAAAGAAATTACAAGTTGATCAAGCATTGGAAATCACTAGCCTTTA
TGGCTTGGAAATGGACCTTACTCCTAAACTAAAGAAACATCCTAATAAAC
TGACACCAATTAAAAGACCTtccaaaataaagaagaaaaaatcctcAAGT
AAAACCAAAAGGGTTTccactgaaaagaaaaaaaagaattctgaaaatca
cgaagaaaaaattcaaagaatcaGTGATGTTTTTTCCGAAAATGAcgatg
tttttgaagaaaatcagGACAAAGGATCTCCGAACGAAGACATTCAACCG
AGTATCGTGGTTCCTGAAAGTAAACCTCGAAAGCGAGGAGAAACTGTATC
GGACACTAACCTAGAAATGAAAGCAAGAAATTATTCAATAAAATCATCTG
AAGTTGTTAAACAGCGTCCAAGAAGCAAAACTACTATGTTAGACGTGTCT
CCGAACAACGAATCGAAAGGAGCTAACCCTGTTACCAAGGTTACCGGCAG
GCGTCAACGACAATCAACCGTTCAACCACCAACTTTTACCGATACAAACC
AGAAAGTTGGTAGCCTTAGTCAAATCAAGATCTCGCCGCGTAAAATCAGT
ACTGCGAGTACCACATTTGAACAACAATCCATGAAAACAAAAGGTCGTAA
AATCAGTCGTGTTAGTCCTTCGGCGTATTCTCCATCAAGTTCTCCGAATC
GACCGCGAAGTAAAACAATGTCAACATCAGCTTCCCGTCAATCCGCACGC
ATGCGTAGTGGGACTGAAACGGATCGATCGGATACAAAAGTTCTAAACGA
CCACCCACGTCGCAAATTAGCATTCAATTCAAATTACAGCCGCGAAAACA
CGCTCCTCGTCAAAGAAGCAACCACAGGCGAAGATGCTGTATTCGCTGGT
GATATTAACTATAATAAAGCGAACTCTCTCTTGGTTAGAGACACGACCAC
AACAAAGAGATCAGTGACAATTGTTCTCGATGATGAAGACACTGATCTCA
ATCATTTCTCTAGATACAGAAAACCAAGCTCGACAAACCCGCCAAATGag
ttaaaagttgaaaataaaacaaatatcaGGAAAATTTCGACTGTTCAGAA
AGGAAGACGTTAAGAAATAAACTCTTGACTTATTCACACAACTACTGCTT
GGGCTAAACAATGAGTTTCCGTATAATTTATTCGATTAAATAAATATATT
CCTAAAGAATAAAGTAAAATTTGTAATATTTCCAAGAAACATTTTTCGGA
AACAGATTACAaatgtaatcgtcagccgtgcaaaattactcgaatctgat
tggtttagaggagtgcgattaatcgttaattgcactattaccactttttg
cactcttcggctaaaaaaaactatgatttactaatgattatttactgaca
attacctcggaatcgtatgtttttaCTGAAAATCAGTTAATTGCACCATC
GAATTATTATCAGATAGAATGAAttcatgcttttttcctcaaaatgaagc
GTGTCTGTAAGGGGTCCCTTAGTTGCAATGGGAATTCAATTGCACGTGTG
TAATGATAAtgtcatttctttgttcttatcgtaatttaattgcatatttt
ctcatacttgattggattcttttgaattctcaaaaaattatgcacataat
ttgattattttcaactgg
Run BLAST on NCBI

transcript from alignment at scaffold_364:287873..291573-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062423 ID=TCONS_00062423|Name=TCONS_00062423|organism=Clytia hemisphaerica|type=transcript|length=3701bp|location=Sequence derived from alignment at scaffold_364:287873..291573- (Clytia hemisphaerica)
CTGGCGAAAATTTACCTATCTTTCCAATCATTGGTTCAAACAGAAAAGCA
TCTGTGTTTTCCTTTACTTCTGAAAACACACGCATCACTTGCAGGTAGTT
TTGCAATGTGTCTCGATAAAAACGAAACAGATTCTAAATATGTACGCAGT
CAACACTTTCCAATACGATTTTTAAGGGGAATCGGATTTTCATCGAATTA
AGAAGCGTTTCGAATAGTGGAGCGTCGTTTATTAGAGTTTCTTGTTGATG
ATGACTTTCAATATTATCGAATAATGGAGTGTATTTAAAGGAGTGTAGAC
TTTTAAACCGACCCCTTATAGCATACCCTTCATATTTTCTCTTTTCTACA
GGGCAGGCTCCACCTACCTTGGTTTTGACGTCAAAGATGCAACTCTGGTC
GCTTCTGGAACGAAATGCGGAGAAGGAAAGGTGGATGATTTTCTTCTTAA
AATGCTCAATAACATAGTTCAAGGAAATATGAATTTAATCATATGCTTAT
ACCCTAAATAAGTATTTAACAACAACATCATCTCGACTAAGAAGTCTTTA
TGAAAAGTATTTTTTGACTGTATAACTTTTAAACTTTCTATAGGTGTGTC
ATGAGAAGCGTTGTATCAATGTTACAGACCTTCAACAATCGAAGTGCGTT
TCAAAATGTCCACCTGACAAAGTGTGTAGCAACGAAGGAGTGTGTCGGTG
TTTGTACAGTTTGGACAATGTAACGTGTATCAACCCTCCTCCCCTGCAAC
GAAAAGCTGTTGAAGGAGAAATTAAAGGTAACATACGCACGCGCAATGCA
CCGTAGCCAGAAATAGATTACTCTCGGGTGCTTACTTAATAAACAGGGGG
AGGGATTAATCTTCTTATATTTCAATAAACGAAAGTCGTACTTTTGAAGC
AGAAGAAAGACAAATAATATTACACCAGCCTTAACTTGAACCCATCAATC
CTAACTGGCAACATTCTGTAGTTTAATTTTCCATGATTTTCTTTAGATGA
TTCAAACAGCAACACTTTGATCGGTGTTTTAGTCACCCTGATAATCCTCC
TCCTCTTGTTGATTGTCATTTTGTTCTTCAAAAGGAAATCAATACAAGCC
TTCTTATTGAGACGAAAGTTGAGGTGAGATTCTTTACAAAGATCAAGATA
AACTGACCTTTACCCCTTCTTTGGAAAGAGTATTTCTACCTTTCTTTTCA
TAACCCTTTTAAGAAAAATTGTGCAGCCGAAAGGCGTAAAGATGGCCCTC
AAATCTACACATACCATGGGCCCCGTCAACGCCCCCCCCCCCACTTTATT
CCAGACCATGTTATACTTTTTTTAAAGTTACTATTTTAAGCCATAGAAAC
TATTGTTCTCCCCAATTAGATATCGTTTTAAGGTATTTTGAGGGTGTAAA
AAAAGTGAAAAACTTTCAAAAGGACTCGCCGGGGCCCATGCCTAGTACAC
CTATTTGCCTTTAACTGGAATTTTCCCTTTCCCTCACTCTCTCCGCTACA
CTTTCGATATTGTGAGCCTGATTTACCTGAATTTATAAGTTGCAAAGAAT
AGAGGAAAACAGTTTTAAAGTTTATAGTCTTTTAAATTCAATATTTTTCT
ACATTTCTTCAGTTGCGCAAGCTCAGCAATAACCGCGTTAGCTGATTCCA
ATAACAACCAATCAGCGTCTACCATTGTCGATATGGACCAATCAGATGCT
TCGTTCAAAGAAAAACCATCCCTGACTAATAAGCGGAAGATCAGTTTCGC
TTCCAAGTTGTTTGTTGAAATCAGTTCCGTAAGCAGTGGTTTCCGAAATC
CTTTGAAGTCTATTGATGTTACCAAAAGGTTGAACGAACTTGGTAAAGAA
TCAATGGTTGACGATCCTACTGTTTCTGGTAATGTTGGTAAAGCACCAAA
AGTACATTGCGATTCTCTTACAGATACTGAAAATATGCCCAAAAATCTCG
AGCAAAGTGGAAATGAAGTAAGCTCACTTGTTAAATCTGCTAATCCTATC
CTTGTTAGAGAATCTAGCGTTGATCAAGATCCAGAGAGAAAGAAATTACA
AGTTGATCAAGCATTGGAAATCACTAGCCTTTATGGCTTGGAAATGGACC
TTACTCCTAAACTAAAGAAACATCCTAATAAACTGACACCAATTAAAAGA
CCTTCCAAAATAAAGAAGAAAAAATCCTCAAGTAAAACCAAAAGGGTTTC
CACTGAAAAGAAAAAAAAGAATTCTGAAAATCACGAAGAAAAAATTCAAA
GAATCAGTGATGTTTTTTCCGAAAATGACGATGTTTTTGAAGAAAATCAG
GACAAAGGATCTCCGAACGAAGACATTCAACCGAGTATCGTGGTTCCTGA
AAGTAAACCTCGAAAGCGAGGAGAAACTGTATCGGACACTAACCTAGAAA
TGAAAGCAAGAAATTATTCAATAAAATCATCTGAAGTTGTTAAACAGCGT
CCAAGAAGCAAAACTACTATGTTAGACGTGTCTCCGAACAACGAATCGAA
AGGAGCTAACCCTGTTACCAAGGTTACCGGCAGGCGTCAACGACAATCAA
CCGTTCAACCACCAACTTTTACCGATACAAACCAGAAAGTTGGTAGCCTT
AGTCAAATCAAGATCTCGCCGCGTAAAATCAGTACTGCGAGTACCACATT
TGAACAACAATCCATGAAAACAAAAGGTCGTAAAATCAGTCGTGTTAGTC
CTTCGGCGTATTCTCCATCAAGTTCTCCGAATCGACCGCGAAGTAAAACA
ATGTCAACATCAGCTTCCCGTCAATCCGCACGCATGCGTAGTGGGACTGA
AACGGATCGATCGGATACAAAAGTTCTAAACGACCACCCACGTCGCAAAT
TAGCATTCAATTCAAATTACAGCCGCGAAAACACGCTCCTCGTCAAAGAA
GCAACCACAGGCGAAGATGCTGTATTCGCTGGTGATATTAACTATAATAA
AGCGAACTCTCTCTTGGTTAGAGACACGACCACAACAAAGAGATCAGTGA
CAATTGTTCTCGATGATGAAGACACTGATCTCAATCATTTCTCTAGATAC
AGAAAACCAAGCTCGACAAACCCGCCAAATGAGTTAAAAGTTGAAAATAA
AACAAATATCAGGAAAATTTCGACTGTTCAGAAAGGAAGACGTTAAGAAA
TAAACTCTTGACTTATTCACACAACTACTGCTTGGGCTAAACAATGAGTT
TCCGTATAATTTATTCGATTAAATAAATATATTCCTAAAGAATAAAGTAA
AATTTGTAATATTTCCAAGAAACATTTTTCGGAAACAGATTACAAATGTA
ATCGTCAGCCGTGCAAAATTACTCGAATCTGATTGGTTTAGAGGAGTGCG
ATTAATCGTTAATTGCACTATTACCACTTTTTGCACTCTTCGGCTAAAAA
AAACTATGATTTACTAATGATTATTTACTGACAATTACCTCGGAATCGTA
TGTTTTTACTGAAAATCAGTTAATTGCACCATCGAATTATTATCAGATAG
AATGAATTCATGCTTTTTTCCTCAAAATGAAGCGTGTCTGTAAGGGGTCC
CTTAGTTGCAATGGGAATTCAATTGCACGTGTGTAATGATAATGTCATTT
CTTTGTTCTTATCGTAATTTAATTGCATATTTTCTCATACTTGATTGGAT
TCTTTTGAATTCTCAAAAAATTATGCACATAATTTGATTATTTTCAACTG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039105XLOC_039105Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062423-exon-scaffold_364-1575043694:291480..291573TCONS_00062423-exon-scaffold_364-1575043694:291480..291573Clytia hemisphaericaexon
TCONS_00062423-exon-scaffold_364-1575043694:291144..291217TCONS_00062423-exon-scaffold_364-1575043694:291144..291217Clytia hemisphaericaexon
TCONS_00062423-exon-scaffold_364-1575043694:290797..290980TCONS_00062423-exon-scaffold_364-1575043694:290797..290980Clytia hemisphaericaexon
TCONS_00062423-exon-scaffold_364-1575043694:290451..290577TCONS_00062423-exon-scaffold_364-1575043694:290451..290577Clytia hemisphaericaexon
TCONS_00062423-exon-scaffold_364-1575043694:287873..289961TCONS_00062423-exon-scaffold_364-1575043694:287873..289961Clytia hemisphaericaexon
TCONS_00062423-exon-scaffold_364-1510915933:291480..291573TCONS_00062423-exon-scaffold_364-1510915933:291480..291573Clytia hemisphaericaexon
TCONS_00062423-exon-scaffold_364-1510915933:291144..291217TCONS_00062423-exon-scaffold_364-1510915933:291144..291217Clytia hemisphaericaexon
TCONS_00062423-exon-scaffold_364-1510915933:290797..290980TCONS_00062423-exon-scaffold_364-1510915933:290797..290980Clytia hemisphaericaexon
TCONS_00062423-exon-scaffold_364-1510915933:290451..290577TCONS_00062423-exon-scaffold_364-1510915933:290451..290577Clytia hemisphaericaexon
TCONS_00062423-exon-scaffold_364-1510915933:287873..289961TCONS_00062423-exon-scaffold_364-1510915933:287873..289961Clytia hemisphaericaexon
TCONS_00062423-exon-scaffold_364-1491911889:291480..291573TCONS_00062423-exon-scaffold_364-1491911889:291480..291573Clytia hemisphaericaexon
TCONS_00062423-exon-scaffold_364-1491911889:291144..291217TCONS_00062423-exon-scaffold_364-1491911889:291144..291217Clytia hemisphaericaexon
TCONS_00062423-exon-scaffold_364-1491911889:290797..290980TCONS_00062423-exon-scaffold_364-1491911889:290797..290980Clytia hemisphaericaexon
TCONS_00062423-exon-scaffold_364-1491911889:290451..290577TCONS_00062423-exon-scaffold_364-1491911889:290451..290577Clytia hemisphaericaexon
TCONS_00062423-exon-scaffold_364-1491911889:287873..289961TCONS_00062423-exon-scaffold_364-1491911889:287873..289961Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:287873..291573 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.216799	0	0.277498	0.765984	1.36789	0.490569	0.145628	0.911085	0.353384	2.17752e-09	0	0	0	0	0	0	0	0.133964	0	0	0.303948	0	0.557405	0.527379	0	0.237176	0.678	0.212218	0.876797	0.792335
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062423 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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