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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062421 ID=TCONS_00062421|Name=TCONS_00062421|organism=Clytia hemisphaerica|type=transcript|length=883bp
GAAATATAAATATAAGTCTTCTCTTTTTGTGCTTTTTTCATATATCTTCC
TTTGAAATATGTTTTGAATCTCTCAAAGAAAGAGGTTTAGGTGTTAGATc
ataaaaagaggaaaaagtggaaaaaatattttatgttgTTATTAAGTATG
GTTGCTTAGAGCTCCCCTAAAAGGAAGATGGCGGTCAACGGCAGCTATGT
GCAGGCGGAGACTGAGGAGAGTTTATCAGCAGTCAAGTTGATAGCCATCA
ACCCTAATGAAAATGACGAAGAAGATGCAGCTCCTACAACTCCCATGATC
AATAATCGTCCTTCTTCAGGTGGGGGAGAACGTGAAGGACTGGAAGAAGC
TGCCGCAGAAGGAgctatcgataaagtgaaacaTTCCTCTATCTCAGCAA
TCGATACCATTCTCACCAATTTCACTGGAGTAGGGACTGCAGATGATAAG
GAAGTGTTTGAAGATGAATCTTTAAGTGCTGACGTCACCCTCCTACAAGC
TTCAAGTGAAGGAAATATCACCCTGGTTAAGAGCAGGATTGCTGCGCTAC
AGGAAGAATCTAAAAAGTTGACAAGTGATCTAGATAAAGTAAAGGCTTTG
GTTTCCAAAGAGTTGGATCGTTTGGATGAGAAGGATTTCTCGGCTCTTCA
TTTGGCATCGCGTTACAACAGGAAGAATGTTATAAAAGCGTTACTGGATG
CAGGGGCGAACATTGATTTGGTTGGATCTGAAGGGTTAACACCGTTACAT
CTGGCTACTAAATACGACATGACATCAGCTGCAAAATTTCNtttctcgag
attggctctttcattctttatgattatttacacaaagatgcataactata
aacccttgaatgtgacagaacccgattttcgaa Run BLAST on NCBI transcript from alignment at scaffold_364:252369..258822- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062421 ID=TCONS_00062421|Name=TCONS_00062421|organism=Clytia hemisphaerica|type=transcript|length=6454bp|location=Sequence derived from alignment at scaffold_364:252369..258822- (Clytia hemisphaerica)
GAAATATAAATATAAGTCTTCTCTTTTTGTGCTTTTTTCATATATCTTCC
TTTGAAATATGTTTTGAATCTCTCAAAGAAAGAGGTTTAGGTGTTAGATC
ATAAAAAGAGGAAAAAGTGGAAAAAATATTTTATGTTGTTATTAAGTATG
GTTGCTTAGAGCTCCCCTAAAAGGAAGATGGCGGTCAAGTGAGTTATATG
TTATTTTTTAAACTTTAAAAATGCTTTTATTTCATCTCTCTGAAACAAAT
GACTAAATAGCACGTTTTTGTTTGCAAAATGAAATTTGATACCTTAATTT
TCACACTGATCGAGGATAGGAAAACAAAATTTTTGTTTTACAAAGTTCTA
CTCCTCTGCTAATTCAGATGGTAATTCAGACTCTGAAGCATGAATGTGTT
TCGAAAGATCCATATTCTGAGAAAAGTCAATGCTTCTTCAAGAAGGTATT
TTTTAAATTAGATCAGCATAAATTTATTTNATGAATGTGTTTCGAAAGAT
CCATATTCTGAGAAAAGTCAATGCTTCTTCAAGAAGGTATTTTTTACATT
AGATCAGCATAAATTTATTTGAGGCAGATTACTCAATTAATTTTGGAAAT
GCTTAATCAATAATCAAAGAGATAATTTACTATTTTTTGCTTATGGTCTG
CCTAAAAAAAATTGAGATGCAAAACAGCAAGAAATCGTCCTGCATCATAT
GGTCTTTCTACCTCGTTTCCTGCTTATTATTAGCTTTTTTATGCTTACTG
ATAGCGCTAGATAATCTGTGGCGTCAATCAATAACGTAAATAAAGCCTGG
AATACACGGGGATGAAGTTGATGGGATTTCACTTTACTTATCCCAGTTTG
TTAAATTTAACCACCTAATTCTTTGATATCTTGTTAGGATAGGCCTTAAA
ACTCAAAATTGATATGTCCTTTCAACATTATAAGGGCCTTTATAACTTTT
TTATAGTTAGGGCGAATTGTTGTTCAAGGCTCAGTTAACCGGTTTTTGAG
AAACCAATCATTTCTCAAGTTACCAGTAATATTAAATATATCTTTTTAAA
CTCTTTAATTAAATTATATTCGTTTTTTATCTTTGTGTAGCGGCAGCTAT
GTGCAGGCGGAGACTGAGGAGAGTTTATCAGCAGTCAAGTTGATAGCCAT
CAACCCTAATGAAAATGACGAAGAAGATGCAGCTCCTACAACTCCCATGA
TCAATAATCGTCCTTCTTCAGGTTCGTGAGATTCAACTCCTTTGGCTCCT
AATTTTATTATCGTCAAAAAGCTTTAGAAAATTGCTTTTGAAATGCCTTT
TTGGTTTTGGGATGCCGATCTAAGTGTCGGGCTTTTGATTTCTTTTTGAA
AGTTTCGTTATACGATTTTTTCACTCTACACACAGGTGGGGGAGAACGTG
AAGGACTGGAAGAAGCTGCCGCAGAAGGAGCTATCGATAAAGTGAAACAT
TCCTCTATCTCAGCAATCGATACCATTCTCACCAATTTCACTGGAGTAGG
GACTGCAGATGATAAGGAAGTGTTTGAAGATGAATCTTTAAGTGCTGACG
TCACCCTCCTACAAGCTTCAAGTGAAGGAAATATCACCCTGGTTAAGAGC
AGGATTGCTGCGCTACAGGAAGAATCTAAAAAGTTGACAAGTGATCTAGA
TAAAGTAAAGGCTTTGGTTTCCAAAGAGTTGGATCGTTTGGATGAGAAGG
ATTTCTCGGCTCTTCATTTGGCATCGCGTTACAACAGGAAGAATGTTATA
AAAGCGTTACTGGATGCAGGGGCGAACATTGATTTGGTTGGATCTGAAGG
GTTAACACCGTTACATCTGGCTACTAAGTAAGAATCCTGCTATTTATATT
GCTATTGCATGGTACCCCTTACTTTGCTGAAAGAATATCAAAACTAATTT
ACAGCGGACTCCCGCTAATTTGAACTTCTATTTTCGAATATATTATTCGA
GATAAATCTCAGTCTCAGTCAACTCAGAATAGCTGGATTCAAACTCGAGA
TACGAAGCAAAATTTATGCCTTCCCTGATTTTCGTTGTCAATAAAAGTAA
TTTTTCTGCTGTCGAACCATAATGTTTATACTCTGGACCTCTTTAAGCCG
AAAGTCGTGCAATTCTCATCACATACCATTTATTCTATTTTTTAAATCTA
TTCTTTCTCTTCTCTTTTACCACCCAAAGGAAAATAATAGGTAACATCGT
TTTTTTTAATGCTTGCAACCCTTACAGTAAACAAAACATACGAAAAATCT
TTGAAAAGAATTATTCTAGGAACCAGTTGTAAATACTATATAAGTAAGTA
CTAAATCTAAGGGACCCGGCCTAAAAATAACCACAATGCAACAGTCTGGA
TTAAGGGGGCTGGATGTAAGTTTTAGAAAACGCAAAAACTGCTCCCATGT
AATACCTGGTCCAACCACTGACCTTTATATAAGTCTGGACCAAGCTTCTC
AATCCCAGCCAAGCAAAATCTTTGATCGGAGTTTTTTGAAAATTGGTACC
CTAATGGCGGCTCTACTCGATAGCGGTGTAAATGCATCGAGAGCGCTAGG
TCTACTTTTCCTCAAATTCTTTTGATGATGTAGCGGCATTAGACGTTAAT
TTTTAACACTGCAATGGCTTCTCCTCGCGTACCAATTCCAAAAAAACTCC
AATCAAAGATGGCAGATATTGCTTGGTCCAGGATTATATAAAGGTCAGTG
GGTCCAACAATTGTATTGATGCTACCCTGTGGAAATCTAGGCAAAATGAG
TGACGATAAAAGATTATGATGATGCTGAAAATGTTTCACATAAAGCAGTG
TTTCACTTCTTGTTTTTTTGGACCTACCCCGGTGGAGGTCCTATAAATTA
ACCTTTGTCCGTCCGTCCGTTAGTTACCAGCTTTTCTCGAGATTGGCTCA
TTAGTTTTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNAAAAAACGCATGTTTATCTATAAGAATCACTATTAATAAGCATA
CATCAATGTTCTTAGTCAAATTACTCAATTTTTTTATGAGATAAATGTTT
TTTCTGCTCATGAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTATAGAAAAACTGGCCAAATTCGATATTTTTTTA
TAAGCACATTATCAATTACTTAGGTATTGGCTTTTCTCGAGATTGGCTCT
TTCATTCTTTATGATTATTTACACAAAGATGCATAACTATAAACCCTTGA
ATGTGACAGAACCCGATTTTCGAAAAAAAATGTTTTGGGGCAAATTTGGG
CAAAAAAAACGGCTAAAAAACAGGTTTTTGGACTTTGTGAAAAATTGGAT
CATTAATTTTTTCTGATTTTTTGCACAAAAGTAGGGTACCATCATAGGTA
TAAGATGGCTCAAGCAGATTTTGCAAAAAAATTTTGTTGGCTCAAAAAAC
GCATGTTTATCTATAAGAATCACTATTAATAAACATACATCAATGTTCTT
AGTCAAATTACTCAATTTTTTTATGAGATAGATGTTTTTTTTTCTCACGA
GTGTTTAGACAGGAAATTTTGGTTGTTTGGCGGGTTTTTATAGAAAAACT
GGCCAAATTCGATATTCTTTTATAAGCACATTATCAATTACTTAGGTATT
GGCTTTTCTCGAGATTGGCTCATTCATTCTTTATGATTATTTACACAAAG
ATGCATAACTATAAACCCTTGAATGAGACAGAACCCGATTTTCGAATAAA
AATGTTTTGGGGCAAATTTGGGCAAAAAAACGGCTAAAAAACAGGGTTTT
GGACTTTGTGAAAAAGTGGATCAATAATTTTTTCTGATTTTTTGCACGAA
AGTAGGGTACCATCATAGTTAAAAGATGGCTTAAGCAGATTTTAGCAAAA
AAAATTTGTTGGCTCAAAAAACGCATGTTTATCTATAAGAATCACTATTA
ATAAACATACATCAATGTTCTTAGTCAAATTACTCAATTTTTTTATGAGA
TAGATGTTTTTTTTTCTCACGAGTGTTTAGACAGGAAATTTTGGTTGTTT
GGCGTGTTTTTATAGAAAAACTGGCCAAATTCGATATTTTTTTATAAGCA
CATTATCAATTACTTAGGTATTAGATTGGTTGGCTCTTTCATTTTCTACA
ATTTTTTGCATAAAGATACATAACTGTAAATCCTCGAATGTGACTCCGAT
TTTTTGAGAAAAAAATTTTGGGGAATATTTCAGCTAAAAAAACGGCCATA
AAAGGGTTTAGATTTAAATATTGGACCATTGTTTTTTTCTGATTTTTTGT
ATGAAAGTGGATAAAAGATGGCTCAAGCAGACTTTTGTAAAAATGAATTT
TTCAGCTCAAAAANAAAAATTTTGTTGGCTCAAAAAACGCATGTTTATCT
ATAAGAATCACTATTAATAAGCATACATCAATGTTCTTAGTCAAGTTACT
CAATTTTTTTATGAGAAAGATGTTTTTTCTGCTCATGAGGACTTGCTTTT
GAAGAATATGTGTGTTTAGACAGGAAATTTGGGTTGCTTGACGTGTTTTT
ATAGAAAAACTGGCCAAATTCGATATTCNAAAAAAAGCATCTTTATCAAT
AAGAATCACTATTAATAAACATACATCAATGTTCTTAGCCAAATTACTCA
ATTATTTGGAGATGTTTTTTTTTGCTCACAAAGTCTTGAATATGAAAGAA
CATTTCAAGAGCATGAAATTTTGGCTTCTAAACGTTTTTTTTTTATAAGA
AACATACGACCAATTTTAATAGATCGTCACTATTTGTGTTTGGAATGATT
GTTTAATGGTCACGTCACGTAGATATAAATTATAAACGTGTTAAATGCAT
AATCCAGGTAGGTTCATCAAAGTATCACTTGTTTCATTTATACTAACTTT
TTACCCTTTCAAGTTTTCCATTTATTTTATAGATACGACATGACATCAGC
TGCAAAATTTCNTTTCTCGAGATTGGCTCTTTCATTCTTTATGATTATTT
ACACAAAGATGCATAACTATAAACCCTTGAATGTGACAGAACCCGATTTT
CGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062421-exon-scaffold_364-1575043694:258635..258822 | TCONS_00062421-exon-scaffold_364-1575043694:258635..258822 | Clytia hemisphaerica | exon |
| TCONS_00062421-exon-scaffold_364-1575043694:257602..257732 | TCONS_00062421-exon-scaffold_364-1575043694:257602..257732 | Clytia hemisphaerica | exon |
| TCONS_00062421-exon-scaffold_364-1575043694:256996..257437 | TCONS_00062421-exon-scaffold_364-1575043694:256996..257437 | Clytia hemisphaerica | exon |
| TCONS_00062421-exon-scaffold_364-1575043694:252369..252490 | TCONS_00062421-exon-scaffold_364-1575043694:252369..252490 | Clytia hemisphaerica | exon |
| TCONS_00062421-exon-scaffold_364-1510915933:258635..258822 | TCONS_00062421-exon-scaffold_364-1510915933:258635..258822 | Clytia hemisphaerica | exon |
| TCONS_00062421-exon-scaffold_364-1510915933:257602..257732 | TCONS_00062421-exon-scaffold_364-1510915933:257602..257732 | Clytia hemisphaerica | exon |
| TCONS_00062421-exon-scaffold_364-1510915933:256996..257437 | TCONS_00062421-exon-scaffold_364-1510915933:256996..257437 | Clytia hemisphaerica | exon |
| TCONS_00062421-exon-scaffold_364-1510915933:252369..252490 | TCONS_00062421-exon-scaffold_364-1510915933:252369..252490 | Clytia hemisphaerica | exon |
| TCONS_00062421-exon-scaffold_364-1491911889:258635..258822 | TCONS_00062421-exon-scaffold_364-1491911889:258635..258822 | Clytia hemisphaerica | exon |
| TCONS_00062421-exon-scaffold_364-1491911889:257602..257732 | TCONS_00062421-exon-scaffold_364-1491911889:257602..257732 | Clytia hemisphaerica | exon |
| TCONS_00062421-exon-scaffold_364-1491911889:256996..257437 | TCONS_00062421-exon-scaffold_364-1491911889:256996..257437 | Clytia hemisphaerica | exon |
| TCONS_00062421-exon-scaffold_364-1491911889:252369..252490 | TCONS_00062421-exon-scaffold_364-1491911889:252369..252490 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:252369..258822 - |
Blast
The following BLAST results are available for this feature:
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