TCONS_00062410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062410
Unique NameTCONS_00062410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4748

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062410 ID=TCONS_00062410|Name=TCONS_00062410|organism=Clytia hemisphaerica|type=transcript|length=4748bp
CATAGTTTTTAGTAGAAAAATATACAATCATCATACTTGGTGACTAAAAA
TGGGCGCTGACATGGAGCTTGTGCGACTTTTCAATATGGAACTTTCATCC
ATATATGAAGGAAAACCACCTGTTTCAAAAGCAAAGATGGCCACCATTAC
ACGATATGCTGTCAAGGCTCTAAAGTATTACAAGCATATTGTTCACAGCG
TTGAAAAGTTTATTCATAAGTGTCATAATGAATACAAGCTACCAGCTCTT
TATGTTCTTGATTCCATCATCCGTCAATCTAGACATCAGTTTGGTCCTGA
GAAAGATTTATTTGGTCCAAGATTTGAAAAGAACATCAAATTTCTCTTTC
AACACATTTACCAATGCCCCTCAGAAGACAAAccAAAAGTTGTAAGGGTG
TTGAACTTGTGGCAAAAGAATGGAATTTACTCTCCTGATGTTATCTCCCC
TCTTATCGACATGGCATCACAATCACAAAAGTCACTTCAATCAGCCATca
gtaaacagaaaaaaatgaaagctGCTGCCAATGTCCAAGAAGATGATGCC
TTTGATTTTGTATCTGGTTTTGAAGTGAATGAAGAAAGACCAAGCTCCTC
TAAAAAGAAACGCAAAGGCATTTCAATGTCCCAAGATGATGAGATCAAAG
TCTTGAAGGCGCAACTGGAGcaacagaaaaaacaacaagaactCTTACAG
CAGCAACTTCAGATGCAAATGATGCAGACAAAACAACAATCCCTTCAAAT
GCAAATACAACAACAAGATCAACTACGTTCCAAAATGCAAGAGCAAGCAA
CTAACTCTGGACCGaATCCCATTGAGCAACCAAATCTTAACATCTTGAAT
CAAATCCAAGACCTTCAAAAACAACTTGAAAAAGACAAGGTGGAATTGGC
CAGTTTGGCAGTCAACAATGAAAAAGATCCGAACCATGCCAGCAACAACA
ACTCGCATCCTATTGAAAACCAAACACAATTCCTGGAGAACATTCAACAG
TTGATTCAGAACGCAAAAGGATTAGTTCCTTCCAAAGACCCAAGGAGCAG
TGATGACCGACAGAGACGACCCTTACATCAAGAACGGACCACCACCTACC
AAGAAACCTTTATTAAATTGGGAAGAAGAACGAAGGCCTTCCTACGATCA
AGATGATGCCATGCAGATTGATGATGACGATTATGAACCCAGTTTTCAAC
AACCATCACATCAAGAAGACCCACGTAAACAGCAACAACAATCTCAGTTG
AAACCTGAAGAGGTGTCAGAAGAACAATTCAAGCaacaaaaagagaaaga
gaagaagCTGAGGGATAAGAAGTTATTGCCTTCACCACGAAATGGCTGTG
TCACCATTGCCAGTGTGACAGTGTGGGTCGGAAGATTACCAAAATACTTC
AGCAAAGATGCGTTGTTGAACCATTTCAACGAGTATGCCGACGTCAAAAA
TGTCGATATGATCGAGTCACGTGGTTGTGCATTTGTAACCATGGCAACAC
GTTTCGATGCTGACAGTGCATTGCGTTATATGAAGCATAAACGAATCGAC
GGTGCTGACGTCAAGTTAAACTGGGGCAAAACAAAAGCATTGTTTGACTA
CTCACAATATTGGGAAGAGAAAAGTGGTTGCGCCTTCGTTCCTTGGGATC
AAGTCAATCTTCCGAAGTTGGTGTCTCTTGTTGATACTTATCTTATTGAT
GAAGACACCCTACCTCCTGGAATGAACCTGCCCTCTGAAAAAGACGAACC
CAGCACTCCTTCTAAAGATGAGCCACAACAAGTGATCCCTGTCGCTGGTG
TTCCACCGTTCATCCCTGGCTTCCCTCCCGGTTTTTTTCCACCTGCTGGT
CTATTACCGGGCATGCCACCTGCCGGACTCTCTGGACGCCTACCGTTTCC
TGGTATGCTCCCACCTAATATTTTGCAGCTACAGAATCTTCAACGTCAAT
CTATTCAAGGGCTCGTTGGTGGTGAGAGGCCTCAACTTCAAGGCTTAGGA
GAACGACCTCCCCTTCAACCTGGTCTTCAGCAAGGAATGGGCGAAAGACC
TCCCCTTCAACCTGGTCTTCAGCAAGGAATGGGCGAAAGACCTCCTCTTC
AGGGTATGCCAAGACCACCTATTCAAGGTCTTGGTGAACGACCACCCttt
caaaacatggctgagagACCACCTTTTCAAAATATGGGCGAGAGACCACC
CTTTCAACAAAATATCGGTGAGCGCCCTCTGCTCCAACAAAATAACATGG
GTGAACGCCCTCCTCTTCAAGGGCTAGGCCAAAGACCGCCTTTTCAAAAT
ATGGGTGACAGACAATCACTTTTACAAAGCTTGGGTCAACAACCTCGCCC
CGGTTTCGGAGAACACCCACAAAGACCAGGTTTTGATGAGAATCGCCCAC
GCCCTGGACAGCCAATGGGTGGCCCGCCACAAAGACCTAGCTTCACCCCT
GCTTTTGGCGGAGACAGTTTCCAAAATGTAAGGCCTCGGCAGGAAGGACC
AATTAGTCCAGGACTCAATAATATAAGACCCCCTGTTTCATTTGGGGAAC
GTCCTCCTGTTCAAAGACATCTATTTGGAGGAAATCTCTTATTCAATGGC
TTGAATCAACGCCCTCAAATCCAAAACTTACTGAGTCAAAACCAACGTTT
CAATGGTCCGCCTGAGAACAGATTCACCAATATACGACCAGTTGCTCCTG
AAGAATCCCAGATATCTCCCAATGCACAAGATGCTGGACAAAGGCCACCA
TGGTTGCAAAATCGTGACCAGGTTGGTAACATGGGAAATCAACCAAGTAG
AAACGAGGAAACAGTGGAGAAGAATGTCCAAAATCAGAGAAACTTGACGA
ACCTGCCAACAGCTGCTTTCTTGCTCAATCTTGTGAACCAACACAAGGAA
CAACAAGCCTCAACTGATAACCAGACGCAACCTGGAGATGAAGAATCACA
ACCACCGCCACAAAGAGAACGTGAAAGGTCTCCTACTCGTGATAGATCAC
CCGTGCGTGATGACCGTGACCGTGAGAGAGGCGATCGGAGACGTGAGAGA
AGTCGTGAACGTAGAGATAGTGATCGTGACCATCGCGGAAGACGTGATCG
CAGCTCTGAGCGCAGCAGTCGTAGCCGGCGTGATGACCGCGGGCGGGAGC
GTGATTATCGTGGTAGTGATCGGGAGAGAGGTAGTGACCGTGATCGCGAT
GAACGTGGTCGGGGAAGTGATCGTGATGAAAGAAGTCGCAGAAGTGACCG
CGATCGAAGCGGTGATCGTAGAAGAGAGCGAAGCAGTGAACGAAAATCCG
ATCGAGATCGTTATGAAAGACGTGGTCGGGACGAAGATCGTTATCGTAGT
CGGGATAGACGAGAAAGGAGTCGGGAACGTGGAAGAGATAGGGACAGAAG
TCAAGAGGAAAGTCGCGAGAGGAACGAAGATGAGTTATTGGCCAGTCGTA
GTGAGAGTGCAAAGAAACAAGATGAGGTTACCAGCGGAGATACTGTCGTT
GCTACTGACCAAGCAAATTCTGCGTCAACTGGTGATCGACCAACAAAAAC
TGCAGAAGATTTGTACGACCCAATGGAAGCTTTAGATTCACCTGCAACAA
CTGCCCAAAAGGAATCGGCCCCACAAGAAACGGCCCAATTAGAAACGGCC
CAACAAGAAACGACCCAACAAGAACCGTCTCAAACTGAAGAGACCGAATC
TGAAGCAAACCAGCGAGAAACTGAACCAATGAAACCTGAccaagatgaaa
aaataatgcaAGAAAGTGCCCAAAATGAAACGACCGGACAAGAAACAGCC
CAAAATGAAACGTCCGAACAAGAAACAGACCAAAAAGAAACGGCTGAGCC
CGAAATGGAACATGAAAAACCCATCGATCCTCAATTGGAAGAAACGAAAG
AAACCATGGAAACAGAACGCAGTGAGTCTCCCATCTTTCCATTAGTGAAA
GAAGATGACGCCATATTCCCAGACGCTGCTGACGAAGAGGACGCTGCTGA
CGAGTCGATGGAAGGAGAAAGTGAGACTAGCCAACAGGCTAATGAACCTG
AAAATCAGGAACAAGAGTCGAAACCTGACGATCCCGAACAAAGTGCTTCT
ATAGAGGAACGCACTGAGGAAAATGTCGAGGTCTTTTCTACCAATACGAA
TGAGAATCGTCAAGCGGAGGAAGTCGAAGTCGATACAGAGCCCTCTGAAG
TTTCTGACGAGGTTACGGCTTCTGAAGATACGAGGGCAAGGGTAGAAGGG
GAGTGAAGAGAAGGACATTAATTCGTAGTCGGGACCGTAGGTACGCCGTA
TAAGTAGAGAATGTCTGTtggaaaaaggaaaattgaagCTCTTGGACTTG
GATGATCATTTCAGcgaatttcaaattgttttgtcTCGATGTTGACACCA
TAGGCTTTTATGCATAATATATTTAGCCAATGAAGCTAAAATAATGCAAC
ATTTTTAAATGAACTTTTACGCTGTTTTACGtgaagtgtttttattttta
tgaaaatttaattttcgctGTTTTCGTTGTTAGAGGTTTCAATTTCGTGT
TTTATCTTTCAGACCTCGTGCAAACTTGAGCCATACTTATTgatgggatt
aaatttcgcgactaGTTTGAGTCTAtctaaaaaatttctttcttggTGAG
TCTAAATGATGGGTTGCTCGATTTAAAATTCGACCATAATAAAAGAAAGC
CGCGACTGAATGAGTAcagctgaatttctgttgttctaagTATGTCGT
Run BLAST on NCBI

transcript from alignment at scaffold_364:189557..201184-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062410 ID=TCONS_00062410|Name=TCONS_00062410|organism=Clytia hemisphaerica|type=transcript|length=11628bp|location=Sequence derived from alignment at scaffold_364:189557..201184- (Clytia hemisphaerica)
CATAGTTTTTAGTAGAAAAATATACAATCATCATACTTGGTGACTAAAAA
TGGGCGCTGACATGGAGCTTGTGCGACTTTTCAATATGGAAGTAAGAAAT
AAACATTTTATTTTAACATTACATTTTCTTGAAAACCTTGAGAGGAGTGA
TTTTGATCATGAAAATTGCATTCTATACAAATTTATAAACATGTCAAAGA
TTGTAAAAGGCAACACTGCAAATAACCTTGTTAAAACCCTGAGAAATGCC
CAAAAGTTACCCTAAAAGTAGAAGGGCTGTTTGCCAGATAAATCTTGAAG
CTAGAATTTAAATTCCCCACTGTAAGTAAAGTCTAGTAAAGTTTGAAACC
TGTGGGTTACTATTAGCTTTTATTGCTAATGAAAGCTTGATAATGCTATC
AAACATTTTTATAGCTTTCATCCATATATGAAGGAAAACCACCTGTTTCA
AAAGCAAAGATGGCCACCATTACACGATATGCTGTCAAGGCTCTAAAGGT
GAGTGGTACATTTTGTTTCGAAGAAAGGCAACGATACAAGTTTATGTACC
ATAATAACCAGTAATAACTACATTACATATTGTAAAACCATTGATAAAAC
CAAGATCTCCTATGTCAAGTCTTTGTAGATTATCAAGAACAAACAATAGT
ACAATGTACACTTTCTTTTAATTCGATTTTAATTTGATGCAATGCTTCCT
TTTGACTTTAAATCATGATCTTTTTCTTTCATCTGTTTTAGTATTACAAG
CATATTGTTCACAGCGTTGAAAAGTTTATTCATAAGGTAATTCTTAAATT
TGTCATTTGCTTTTTTTAAACACATCCATTCTTTTGTAGAGTATAACCTT
TGTGATGTGATGTAAGATTATAATATCCAATATTATGAAATAGAAAAATA
AGCTATTGTAATAATTATGATGATTATTATTCTTGACCATGTGATTTTGT
TTATATTATAGTGTCATAATGAATACAAGCTACCAGCTCTTTATGTTCTT
GATTCCATCATCCGTCAATCTAGACATCAGGTAGTCGCATTTTTTTCTCT
TTGTTTACTGGCCTTACTTTATATTTACATTTCATGCAAAATTATGTTTG
TTTGATTTAGTCCTTCATTATGACAGAGCTTGAAAATTATTCTCGGAATA
TTATACAAACTGATATCATTCATTTTTCTTACAGTTTGGTCCTGAGAAAG
ATTTATTTGGTCCAAGATTTGAAAAGAACATCAAATTTCTCTTTCAACAC
ATTTACCAATGCCCCTCAGAAGACAAAGTAAGAGATTTCATTTCTTTTAG
TCTATAAAAACACATACAATTGCTTTGAAAATGGCAAATAGACTATTCAT
GATATGCACCACTGCAATGACTTCACGAAATTATGCAACTTTTCTGTTTT
TGTTCCACCCAATACGTCACTTTTTCTATTGTTTAATAAGTGACGTATTG
GGTGAAAAATTTTAAAAGTTCTCAGAAGACTCTCCAGTGGTGCATATCAT
GAATTGATAACTCAGAGATTTTCAAATAATTTAAATTTTGTTGATTTTTT
TCTTCAGCCAAAAGTTGTAAGGGTGTTGAACTTGTGGCAAAAGAATGGAA
TTTACTCTCCTGATGTTATCTCCCCTCTTATCGACATGGCATCACAATCA
CAAAAGTCACTTCAATCAGCCATCAGTAAACAGAAAAAAATGAAAGCTGC
TGCCAATGTCCAAGAAGATGATGCCTTTGATTTTGTATCTGGTTTTGAAG
TGAATGAAGAAAGACCAAGCTCCTCTAAAAAGAAACGCAAAGGCATTTCA
ATGTCCCAAGATGATGAGATCAAAGTCTTGAAGGTACATTTTATAACGCT
CCAATAGTACACTTATTCGAAAAAATAGTACTTATATGTATTTTCTTTTA
AGTATCTTTACAAGTTAACTATAATGAATTTCTTGCTTATCTGTCGGTAC
AGGGTAAGATTTTCATTCTAAATTGCAGTAAAAATGTAACTTGCAAGCAT
GTCATTTTAACCAACACGCTATTCCAATCTGGTCATTTCTAATTCATTAA
GAAATCTCAAATTAAATTTTTTATAATTTTCTCGTTCAGGCGCAACTGGA
GCAACAGAAAAAACAACAAGAACTCTTACAGCAGCAACTTCAGATGCAAA
TGATGCAGACAAAACAACAATCCCTTCAAATGCAAATACAACAACAAGAT
CAACTACGTTCCAAAATGCAAGAGCAAGCAACTAACTCTGGACCGGTAAG
TCTTGGACTCAACGAAAAAGGTCCTAACTTTGATTTAGTTTATTATGATT
TAATGATTGTTAACATTTGGACTATGAAAGCAAAGCAAACTTATTTAACT
TTTTTACCTGAATCTTTGCAAAATTGATCCACATGGTTATGAATTCTTCA
TACAATTGGTTCTCTTGAATTCATTTTTCTTCATTTCAGAATCCCATTGA
GCAACCAAATCTTAACATCTTGAATCAAATCCAAGACCTTCAAAAACAAC
TTGAAAAAGACAAGGTGGAATTGGCCAGTTTGGCAGTCAACAATGAAAAA
GATCCGAACCATGCCAGCAACAACAACTCGCATCCTATTGAAAACCAAAC
ACAATTCCTGGAGAACATTCAACAGTTGATTCAGAACGCAAAAGGATTAG
TTCCTTCCAAAGACCCAAGGAGCAGTGATGACCGACAGGTTAGAAATTGG
TTTATTATACACATATCTTATATAAACACTAGGTAGGTCTACTCTGTATT
TCCCAAGCAACAGTTGAAGCAAAATAATGTGCCATCTTTGCTGAAAGTAT
ACCACAGTTTGGTACCGGCAAATTGTTCAATCAAAACAAACAAATAAAAT
GGTGGGAAACGATTAGGCGAGAAAATGGTCTTGTTAAAGATGGCGGATTA
TTTTGCACAGAGTAGCTCTATCTGTTTTATATGAGATAACTGTGGTTTAT
TACCCCACGTACTCTTTGAGACTCTTTGGAAATCTAGTCTTCTATTGCTT
TTTTTACATATTAGTGGCAAGTTTAGAACATGAATAAGCAAAAATGATCA
GACTCCAGTCAGCAATAAGTAATAAGTGTATAATTAAAGTCAGGTCATGA
TAAGTTTTCGCCTTTTCAGCTCTCATGTGTTAACTCTATTTATGTGATTG
GACCAATCCTCAAAGAGTGTTAGCGGGAAGAGACTTAAAATAACCTTTTC
CAAATTTGTTTTCGGGACCCCTTTATACGTATTTGGAAGTGGACTTAAGA
TAGAAGTGATAAAAGTTCTTACATAAGCTGAGTGAAACCAACACATATTA
TGCACATAGTTTTCAATGCATGTCAATGGTGGTAATGATGATGCTCAACT
ATGGATGCTGAATTTCAATCCATTCATTCCTTACAGATAGTTTCTAGTGT
TAAGTCAAATGTAGTGGTTTGAAAAGGTAAGTATGTTTTCATTGACCATC
AGTTCAAATTGCGTAGTAGAATATTCCAGACAGTCAAAAGATTTTGTAAG
ACTTGGGGAACATTCAGATGACTTGATGCAAATGGTGGTTAGGTATCGAC
GATCAACTGATGGCAAGGACAAAATGGAATTTGATAAAGTATAGTAATTA
GTTTAGTGTATTAATAAGTCCTCCTATTATCAGGTAAGTATTTACTTTAT
TTTCAATTTGTTTATGTCTCAGAGGAATAACCAGATAAAAATCACATTTT
TCGATATATGGACTAAACTCTCAAAAGTGCTAGTAATGAAATTTTGCAGG
ATTTTTATTTGGTTGTTCCTCTGAATGTAAATGTTTGTGTTTGTTTGTTT
GTGAAATCAAAATGCATAACATGGTCAACTCAGGAGTGGTTGTAACAACA
GATTATATTCAAGATGGTTCGGTCAACTCTTAGCCTCTACTCCCCCTCTT
TGTTCTGTTTGCAAAAGTCTTGCTGACACCTTTTTAACCCTCTACAGGGC
TTTGACTACAAAGATCAAGAACAAGACAGGATGGCACAACAACAGAGACG
ATCACCAAACAACCCGCAACGGTTCAGGTCAGTATCTTTCAAAAACACTG
ATACAATTGCAAACACTTTCAACCCCTTTTTGTGGATCTTTTTCTGTAAG
GTTAAAGCTAAACTTTGTAAGGGATTCTTTTTCTTCTCAGTAAAGAGTTC
TCAGAAATCTTAAAACTTTTCAGTTTCACACTTTTGACACTTTTTCCTCT
ACACAATTCTTTTTGACAGAATGTTCTTGAATACCTAAGCGAAAGATATC
GACTTTCTCTATTTTTTTAACTCCCATTTTCTACAAAAGTCTTATTTTAA
AATCAGTAAGCTCTTGTTTTGGGCAGTTACACGATTCGGTATACTAAATT
TCTTGAGATCAAAACATTTACCGGAATAGATTTTAAAGCTTTAAATATTG
TATGTGTTCATCACATTTTGTGTCATTATTCACCGATTCTTTATATTTCT
GTCATTGTATTTCAATTCATTCCCAACTTGGTCTTTGGGCATTTGGGAAT
GAATTAAATGATAGGAAATACAATCCAATGATTTTAGAGAAATATAAAAT
TTTTGATATTGGGGTTAATAATGACACAAATGAAATAGACGGATTAAAAA
TTAAAAAAGTAATTGCACGTGTCTAATCTCAAGATCAATTATTTTGCACT
GAAAATTAATGTCATAAAAAAATTCGAATCAAATCTGCTACCTTTTATTA
AATAAAGGGAAGATAAAGGCACTGATCGTGAATTTTTCAAAGTATTTAAA
AAAGAAAAATGAAGAAAAAGTTATTTTTGATTTACCGATTTACAAGAAGA
ATCTTCTTCTTTCTATCTTCTTTTAAAAATTGACAGTTTCAAATAATTCA
AAATCGTTGAAATTTATTTTCAAGTTTGTCTTACACTTGAATTCTACTCA
AATCTTTTGGTCTTGTCGTCAACCTCCACACCAAAGTCCTCCTTTTTTAC
TTGCATTGTTCTTATCAACGATTTTCCGATTTTTACGTATCTTTTTCTTT
CAGAATCACACTTTTCATAATATCTTGGGTATTCTTTCCCATTCTCCTTT
GACCCCTCCTCAGCCCTCACCAAACCATCCTGCCTTACTTTTCAAGAGAA
GTTTTTCCCAATTATTTAACTGAAGACCCATGTTATGCATTTTGATTTAG
CAAACCTAACAATCCTTGTCTAGTTAGTACGCATAGTATATACTCGTTTT
AACTTACAAAAATTCTTATTTTACAACCAATGATTTGATTTCAATGAATT
TGGTATTTTGGTAAATTTGATTGAAAAGATATTTCTAAGCATAATTAAAA
GTATAAATTGTTCTAAAAGTTTCGTTTTTGGTAAATAAGCCTTGTTGATT
TCAAATTATACATAATATTTTTCAAAGTTTCACTGTTCCAAATAAATAAT
TGCAGTCCCAAGAAACAAAGGGTCTGAAAACCCCTGTTTTGGCCACTTTC
TAATGACTGTAAGTTTTGCTACAGTAAAGCTATAGTTACAGATTTTAGAA
TCTGCAAAAGTGCATTTGTACTTTTGTACTAAGAATGAAGCTCTTAGCTC
ACAATGATTTCGTTGTTCCTCATCTTTGTTTGTCTCGAATTCTTTTCTAT
CAAATTATAATGCTCAGAAATATATATTTTTACCAAATTTATTGAAACTT
AAGCCTTGGTTGTAAATTTGGACGAAAATACGAGGAAAATTGGCGAAATA
GCAATCAACTTTTAGAGGGTCAAAATTTAGACATTTTATTTGCATTTTAA
GGAATTTGATGCCAAACATTGTACGGTGAAATAATTTTCTCTTCGAATAA
TAATCGGACATGGAAATTATCCGGGGACCATTGTTCTGTAACGATTTAAC
ACATTATCAAAATAAATTCTGTTCATTTCTTCACCACTGCAGAGACGACC
CTTACATCAAGAACGGACCACCACCTACCAAGAAACCTTTATTAAATTGG
GAAGAAGAACGAAGGCCTTCCTACGATCAAGATGATGCCATGCAGATTGA
TGATGACGATTATGAACCCAGTTTTCAACAACCATCACATCAAGAAGGTA
AGTGGTTTTAAATGTCTTCTGGGTGTTTTACCTCTTTCAATACTGCAAAT
TATGATGGAAAATCAAGGTACTAAATTCAAATAGAATTACGTCAGCTTTG
ATGAAACGAAAAAAGGTCAAGTTTGGATCCATTAGGAAAGCCACTCCTGT
TTGAAAAAAAAATTCCAGACAAATTAAACAATTACGACAACATATATTCT
GTGGACTCTTCGCATATGATGAGGACCTCTGCTTGATTTCAGCTCTTCAT
TTCTTGGGTATTCTTTTCCATTCTCTTTGACCCCCCTTAGCCCTCACCGA
ACCATCTTGCCTTACTTTTCAAGATAAGTTTTTCCAAATTATTTATATGA
AGACCCATGTTATGCATTTTGGTTGAGCAAACCTAACAATCCTGTCTAGA
TAGTACGCATAGTATATACTCGTTTTAACTTACAATAATTCCTATTTTAC
AACCAACGATTTTGTTTTTGTAGGCTTTTATTTTAGTTAAGATACTCTCC
ACATCTTGGGTATTTCCATTCTCTTTTGACCCCCTCCTTAGCCCTGACCG
AACCATCCTGTTTTACTCTTCAAGAGAGATTCTGTCCAATTATTTTCCTG
AAAACCCATGTTATGCATACATAACTTGTGTTTCAGACCCACGTAAACAG
CAACAACAATCTCAGTTGAAACCTGAAGAGGTGTCAGAAGAACAATTCAA
GCAACAAAAAGAGAAAGAGAAGAAGCTGAGGGATAAGAAGTTATTGCCTT
CACCACGAAATGGCTGTGTCACCAGTGAGTTCTTCAGTGATAGTGTTTTC
TGTTGAAGGCTTTTTTTATGATAATCTTATAGGTGGTAGACCTTTTGGCT
TGCTTGATGAAAGTCGGCTGTCTAAAGTCAATGCAATGACTTCCTTTGCT
TTTCGATGCTGGAGTAGATAGAAGATTAGATAGAAAAAAGGTTGTTGCAT
CGACGTTAAAGAAAGACCTTGGACAGCCGATTTTTCAAACAAAAATTTTT
GTCCCCTCAATTTGAGTAATCGTATAAATTACTTTCTGTAATTCCAATCT
TTCTCTATTTTGAATAAAATATTTTATTTTATTTTCAACTTTCTCGTGAG
ATCTCTAACACTTTAAACTACTTTTACAGTTGCCAGTGTGACAGTGTGGG
TCGGAAGATTACCAAAATACTTCAGCAAAGATGCGTTGTTGAACCATTTC
AACGAGTATGCCGACGTCAAAAATGTCGATGTAAGAAACAAATGAATGTT
TATGATTATAACCTAGCTCTATCTGATCCTCGAATTTTCATTTTATTAGT
CAGAAAATTATGAACCAAAGATTCAGACCCAAAACTTGCGATAACATAAC
AATGTCATTTCTGGTATACCATATATCTAGACAAAGATGTGAAAAATGCA
GCAAGAACATCAAATCTATTGAATTCTTTCCAAGTTTGATCAATAACTAT
TAGCTACTTTTATCTAAGTTACTAAGTAGCAAATACTTTTCTTCTATGCT
AGATGATCGAGTCACGTGGTTGTGCATTTGTAACCATGGCAACACGTTTC
GATGCTGACAGTGCATTGCGTTATATGAAGCATAAACGAATCGACGGTGC
TGACGTCAAGGTAAACCCTGTTGTTTTTCGGAGCTTTGATAAAACTCGTA
ATGATGTAAACCACAGAGTGGATTTTTATCCATCCATTTTCTAATCTAAT
ATTATTGTTATATTGATAGTATATTTATCCTTTCGCAAAAAATTAAATTG
GTTAACAACGAAGTTTTCAAGGAATTTTCGTTTTTGGAGTATTTGCAATG
TTTAAAACCTTGAATTTCCTCTCCTTTCAGTTAAACTGGGGCAAAACAAA
AGCATTGTTTGACTACTCACAATATTGGGAAGAGAAAAGTGGTTGCGCCT
TCGTTCCTTGGGATCAAGTCAATCTTCCGAAGTTGGTGTCTCTTGTTGAT
ACTTATCTTATTGATGAAGACACCCTACCTCCTGGAATGAACCTGCCCTC
TGAAAAAGGTAAGCTGTTTCAAAATGTGCGGGATAATTTCTTTTTATTCC
TTTACAACAATAGATAGCAGGCTTGAAAGCCTTTGAATGATATGAAAATG
TTTTGATAGAAGAAATAAAGAAGACATATTAAAAATGATTTAGAATGATC
TCTGATAGATAATAACTCTCCTTCATTTTAGACGAACCCAGCACTCCTTC
TAAAGATGAGCCACAACAAGTGATCCCTGTCGCTGGTGTTCCACCGTTCA
TCCCTGGCTTCCCTCCCGGTTTTTTTCCACCTGCTGGTCTATTACCGGGC
ATGCCACCTGCCGGACTCTCTGGACGCCTACCGTTTCCTGGTATGCTCCC
ACCTAATATTTTGCAGCTACAGAATCTTCAACGTCAATCTATTCAAGGGC
TCGTTGGTGGTGAGAGGCCTCAACTTCAAGGCTTAGGAGAACGACCTCCC
CTTCAACCTGGTCTTCAGCAAGGAATGGGCGAAAGACCTCCCCTTCAACC
TGGTCTTCAGCAAGGAATGGGCGAAAGACCTCCTCTTCAGGGTATGCCAA
GACCACCTATTCAAGGTCTTGGTGAACGACCACCCTTTCAAAACATGGCT
GAGAGACCACCTTTTCAAAATATGGGCGAGAGACCACCCTTTCAACAAAA
TATCGGTGAGCGCCCTCTGCTCCAACAAAATAACATGGGTGAACGCCCTC
CTCTTCAAGGGCTAGGCCAAAGACCGCCTTTTCAAAATATGGGTGACAGA
CAATCACTTTTACAAAGCTTGGGTCAACAACCTCGCCCCGGTTTCGGAGA
ACACCCACAAAGACCAGGTTTTGATGAGAATCGCCCACGCCCTGGACAGC
CAATGGGTGGCCCGCCACAAAGACCTAGCTTCACCCCTGCTTTTGGCGGA
GACAGTTTCCAAAATGTAAGGCCTCGGCAGGAAGGACCAATTAGTCCAGG
ACTCAATAATATAAGACCCCCTGTTTCATTTGGGGAACGTCCTCCTGTTC
AAAGACATCTATTTGGAGGAAATCTCTTATTCAATGGCTTGAATCAACGC
CCTCAAATCCAAAACTTACTGAGTCAAAACCAACGTTTCAATGGTCCGCC
TGAGAACAGATTCACCAATATACGACCAGTTGCTCCTGAAGAATCCCAGA
TATCTCCCAATGCACAAGATGCTGGACAAAGGCCACCATGGTTGCAAAAT
CGTGACCAGGTTGGTAACATGGGAAATCAACCAAGTAGAAACGAGGAAAC
AGTGGAGAAGAATGTCCAAAATCAGAGAAACTTGACGAACCTGCCAACAG
CTGCTTTCTTGCTCAATCTTGTGAACCAACACAAGGAACAACAAGCCTCA
ACTGATAACCAGACGCAACCTGGAGATGAAGAATCACAACCACCGCCACA
AAGAGAACGTGAAAGGTCTCCTACTCGTGATAGATCACCCGTGCGTGATG
ACCGTGACCGTGAGAGAGGCGATCGGAGACGTGAGAGAAGTCGTGAACGT
AGAGATAGTGATCGTGACCATCGCGGAAGACGTGATCGCAGCTCTGAGCG
CAGCAGTCGTAGCCGGCGTGATGACCGCGGGCGGGAGCGTGATTATCGTG
GTAGTGATCGGGAGAGAGGTAGTGACCGTGATCGCGATGAACGTGGTCGG
GGAAGTGATCGTGATGAAAGAAGTCGCAGAAGTGACCGCGATCGAAGCGG
TGATCGTAGAAGAGAGCGAAGCAGTGAACGAAAATCCGATCGAGATCGTT
ATGAAAGACGTGGTCGGGACGAAGATCGTTATCGTAGTCGGGATAGACGA
GAAAGGAGTCGGGAACGTGGAAGAGATAGGGACAGAAGTCAAGAGGAAAG
TCGCGAGAGGAACGAAGATGAGTTATTGGCCAGTCGTAGTGAGAGTGCAA
AGAAACAAGATGAGGTTACCAGCGGAGATACTGTCGTTGCTACTGACCAA
GGTATGGTTCCTTGTCATTTTGGTCTCCCAAAACATAGTATAGCTTTATG
TTCATTACTCTGTTTACCAAAAAATACACTCTTTATATCTTTATTTTACG
TATTCACTTCTGTATGTAAATACCCAACGTTTATGGAAAATGCTACTTCT
TTTTGATGTTACAAGCTTTCATTTAGATTTGATGCTCTCTAAATCAATTT
CCAAAGGGGAATTGGGTTTTCATCGAATAAGGGCGTATCGAACTGTAGAG
GGGCGTTTATATGAGAAACTCTTTTTGACGGCGACTTTGTCCAAAGAACA
TGTCCAATAATAGTAAAACGTAGAATTAGAGAGCTGTAGGTTTGAAATAT
TCACTTTGGTAACAGTTTCTAAATCCGTTTTCTCTACTTCTAGCAAATTC
TGCGTCAACTGGTGATCGACCAACAAAAACTGCAGAAGATTTGTACGACC
CAATGGAAGCTTTAGATTCACCTGCAACAACTGCCCAAAAGGAATCGGCC
CCACAAGAAACGGCCCAATTAGAAACGGCCCAACAAGAAACGACCCAACA
AGAACCGTCTCAAACTGAAGAGACCGAATCTGAAGCAAACCAGCGAGAAA
CTGAACCAATGAAACCTGACCAAGATGAAAAAATAATGCAAGAAAGTGCC
CAAAATGAAACGACCGGACAAGAAACAGCCCAAAATGAAACGTCCGAACA
AGAAACAGACCAAAAAGAAACGGCTGAGCCCGAAATGGAACATGAAAAAC
CCATCGATCCTCAATTGGAAGAAACGAAAGAAACCATGGAAACAGAACGC
AGTGAGTCTCCCATCTTTCCATTAGTGAAAGAAGATGACGCCATATTCCC
AGACGCTGCTGACGAAGAGGACGCTGCTGACGAGTCGATGGAAGGAGAAA
GTGAGACTAGCCAACAGGCTAATGAACCTGAAAATCAGGAACAAGAGTCG
AAACCTGACGATCCCGAACAAAGTGCTTCTATAGAGGAACGCACTGAGGA
AAATGTCGAGGTCTTTTCTACCAATACGAATGAGAATCGTCAAGCGGAGG
AAGTCGAAGTCGATACAGAGCCCTCTGAAGTTTCTGACGAGGTTACGGCT
TCTGAAGATACGAGGGCAAGGGTAGAAGGGGAGTGAAGAGAAGGACATTA
ATTCGTAGTCGGGACCGTAGGTACGCCGTATAAGTAGAGAATGTCTGTTG
GAAAAAGGAAAATTGAAGCTCTTGGACTTGGATGATCATTTCAGCGAATT
TCAAATTGTTTTGTCTCGATGTTGACACCATAGGCTTTTATGCATAATAT
ATTTAGCCAATGAAGCTAAAATAATGCAACATTTTTAAATGAACTTTTAC
GCTGTTTTACGTGAAGTGTTTTTATTTTTATGAAAATTTAATTTTCGCTG
TTTTCGTTGTTAGAGGTTTCAATTTCGTGTTTTATCTTTCAGACCTCGTG
CAAACTTGAGCCATACTTATTGATGGGATTAAATTTCGCGACTAGTTTGA
GTCTATCTAAAAAATTTCTTTCTTGGTGAGTCTAAATGATGGGTTGCTCG
ATTTAAAATTCGACCATAATAAAAGAAAGCCGCGACTGAATGAGTACAGC
TGAATTTCTGTTGTTCTAAGTATGTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039099XLOC_039099Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062410-exon-scaffold_364-1575043694:201094..201184TCONS_00062410-exon-scaffold_364-1575043694:201094..201184Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1575043694:200687..200770TCONS_00062410-exon-scaffold_364-1575043694:200687..200770Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1575043694:200399..200443TCONS_00062410-exon-scaffold_364-1575043694:200399..200443Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1575043694:200155..200223TCONS_00062410-exon-scaffold_364-1575043694:200155..200223Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1575043694:199908..200000TCONS_00062410-exon-scaffold_364-1575043694:199908..200000Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1575043694:199352..199627TCONS_00062410-exon-scaffold_364-1575043694:199352..199627Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1575043694:198940..199095TCONS_00062410-exon-scaffold_364-1575043694:198940..199095Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1575043694:198497..198745TCONS_00062410-exon-scaffold_364-1575043694:198497..198745Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1575043694:195138..195292TCONS_00062410-exon-scaffold_364-1575043694:195138..195292Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1575043694:194361..194498TCONS_00062410-exon-scaffold_364-1575043694:194361..194498Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1575043694:193905..194005TCONS_00062410-exon-scaffold_364-1575043694:193905..194005Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1575043694:193525..193632TCONS_00062410-exon-scaffold_364-1575043694:193525..193632Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1575043694:193127..193304TCONS_00062410-exon-scaffold_364-1575043694:193127..193304Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1575043694:191184..192953TCONS_00062410-exon-scaffold_364-1575043694:191184..192953Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1575043694:189557..190791TCONS_00062410-exon-scaffold_364-1575043694:189557..190791Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:201094..201184TCONS_00062410-exon-scaffold_364-1510915933:201094..201184Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:200687..200770TCONS_00062410-exon-scaffold_364-1510915933:200687..200770Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:200399..200443TCONS_00062410-exon-scaffold_364-1510915933:200399..200443Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:200155..200223TCONS_00062410-exon-scaffold_364-1510915933:200155..200223Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:199908..200000TCONS_00062410-exon-scaffold_364-1510915933:199908..200000Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:199352..199627TCONS_00062410-exon-scaffold_364-1510915933:199352..199627Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:198940..199095TCONS_00062410-exon-scaffold_364-1510915933:198940..199095Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:198497..198745TCONS_00062410-exon-scaffold_364-1510915933:198497..198745Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:195138..195292TCONS_00062410-exon-scaffold_364-1510915933:195138..195292Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:194361..194498TCONS_00062410-exon-scaffold_364-1510915933:194361..194498Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:193905..194005TCONS_00062410-exon-scaffold_364-1510915933:193905..194005Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:193525..193632TCONS_00062410-exon-scaffold_364-1510915933:193525..193632Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:193127..193304TCONS_00062410-exon-scaffold_364-1510915933:193127..193304Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:191184..192953TCONS_00062410-exon-scaffold_364-1510915933:191184..192953Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1510915933:189557..190791TCONS_00062410-exon-scaffold_364-1510915933:189557..190791Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:201094..201184TCONS_00062410-exon-scaffold_364-1491911889:201094..201184Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:200687..200770TCONS_00062410-exon-scaffold_364-1491911889:200687..200770Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:200399..200443TCONS_00062410-exon-scaffold_364-1491911889:200399..200443Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:200155..200223TCONS_00062410-exon-scaffold_364-1491911889:200155..200223Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:199908..200000TCONS_00062410-exon-scaffold_364-1491911889:199908..200000Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:199352..199627TCONS_00062410-exon-scaffold_364-1491911889:199352..199627Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:198940..199095TCONS_00062410-exon-scaffold_364-1491911889:198940..199095Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:198497..198745TCONS_00062410-exon-scaffold_364-1491911889:198497..198745Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:195138..195292TCONS_00062410-exon-scaffold_364-1491911889:195138..195292Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:194361..194498TCONS_00062410-exon-scaffold_364-1491911889:194361..194498Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:193905..194005TCONS_00062410-exon-scaffold_364-1491911889:193905..194005Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:193525..193632TCONS_00062410-exon-scaffold_364-1491911889:193525..193632Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:193127..193304TCONS_00062410-exon-scaffold_364-1491911889:193127..193304Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:191184..192953TCONS_00062410-exon-scaffold_364-1491911889:191184..192953Clytia hemisphaericaexon
TCONS_00062410-exon-scaffold_364-1491911889:189557..190791TCONS_00062410-exon-scaffold_364-1491911889:189557..190791Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_364supercontigscaffold_364:189557..201184 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.32234	1.55412	4.75902	3.03658	1.19445	1.53596	1.96516	3.00106	2.36507	2.46542	8.49791	3.58813	5.51939	6.20991	7.41261	5.94954	2.23173	4.81382	0.262248	5.13376	5.10412	4.0645	5.32589	6.16331	2.43973	3.02366	2.03316	5.42811	6.88172	3.50222
Blast
[Close]
BLAST of TCONS_00062410 vs. Swiss-Prot (Human)
Match: SFR15 (Splicing factor, arginine/serine-rich 15 OS=Homo sapiens GN=SCAF4 PE=1 SV=3)

HSP 1 Score: 196.052 bits (497), Expect = 1.770e-50
Identity = 86/138 (62.32%), Postives = 110/138 (79.71%), Query Frame = 2 
Query:   62 MELVRLFNMELSSIYEGKPPVSKAKMATITRYAVKALKYYKHIVHSVEKFIHKCHNEYKLPALYVLDSIIRQSRHQFGPEKDLFGPRFEKNIKFLFQHIYQCPSEDKPKVVRVLNLWQKNGIYSPDVISPLIDMASQS 475
            M+ V  FN EL S+ + KPP+S+AKM  IT+ A+KA+K YKH+V  VEKFI KC  EYK+P LYV+DSI+RQSRHQFG +KD+FGPRF KNI   FQ++Y CPSEDK K+VRVLNLWQKNG++  ++I PL+DMA+ +
Sbjct:    1 MDAVNAFNQELFSLMDMKPPISRAKMILITKAAIKAIKLYKHVVQIVEKFIKKCKPEYKVPGLYVIDSIVRQSRHQFGTDKDVFGPRFSKNITATFQYLYLCPSEDKSKIVRVLNLWQKNGVFKIEIIQPLLDMAAGT 138

HSP 2 Score: 92.8189 bits (229), Expect = 1.073e-18
Identity = 40/127 (31.50%), Postives = 74/127 (58.27%), Query Frame = 3 
Query: 1347 CVTIASVTVWVGRLPKYFSKDALLNHFNEYADVKNVDMIESRGCAFVTMATRFDADSALRYMK--HKRIDGADVKLNWGKTKAL-FDYSQYWEEKSGCAFVPWDQVNLPKLVSLVDTYLIDEDTLPP 1718
              ++ S T+WVG+L K  ++  + +   E+  +++++MI  RGCA++ M  R DA  AL+ +   + +++   +K+ W   K +  DY QYW+ + G  ++PWD+V   +L S  +  ++D DTL P
Sbjct:  502 TASVCSTTLWVGQLDKRTTQQDVASLLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALQKLSRGNYKVNQKSIKIAWALNKGIKADYKQYWDVELGVTYIPWDKVKPEELESFCEGGMLDSDTLNP 628
The following BLAST results are available for this feature:
BLAST of TCONS_00062410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SFR151.770e-5062.32Splicing factor, arginine/serine-rich 15 OS=Homo s... [more]
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