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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062393 ID=TCONS_00062393|Name=TCONS_00062393|organism=Clytia hemisphaerica|type=transcript|length=571bp
CTTTGTTTGAGCCAAACAAACAAGACATCGAGACAAATAAGAGTATAAAA
GGCTACGAGTTGTGTTTGACTGCAACAGTTCTTTACAAACCAATTCAATA
TGCTGAAGCTTTTGGTGACGCTTTCATTGGTGACATGCCTATGGGCATCC
TGTTACGACAAAGACGGGGAAAGAAATTGTAAAAGCTGGAAAGACACCAG
TAACTTTTGCAATCGACCAGATGCTGATCAATATTGCGCAATTGCGCAAA
GACTTGTGGGAAATGTAATGGCGGCGGTGGTGGTGGTAGCGGCAATGGTG
GTTCCTGTGGCCGTTCGTTTGCACCCCAAGGGCGGGTGGTGAATGGAAAA
GATGCAGTGCCAGGTGCTTATCCATGGATGGCTTCAATCATGATGTACGG
CAAACACTTCTGCGGAGCCACCTTGGTTGCGCCCAACTGGGCAGTTACAG
CAGCTCACTGTGTTGATTTTATAAAACCCCATCAAGTGCCTTACTGGTTG
ATAAAGCTCGGTGCACACGATCACCGTCAAGTGGAAGCCTCCACACAAAC
ATATAACCTCAAAAGAATTAT Run BLAST on NCBI transcript from alignment at scaffold_364:320514..323997+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062393 ID=TCONS_00062393|Name=TCONS_00062393|organism=Clytia hemisphaerica|type=transcript|length=3484bp|location=Sequence derived from alignment at scaffold_364:320514..323997+ (Clytia hemisphaerica)
CTTTGTTTGAGCCAAACAAACAAGACATCGAGACAAATAAGAGTATAAAA
GGCTACGAGTTGTGTTTGACTGCAACAGTTCTTTACAAACCAATTCAATA
TGCTGAAGCTTTTGGTGACGCTTTCATTGGTGACATGCCTATGTAGGTAG
ACTTCCAAAATTTATTCATTTCACTTGTATCTTGTATGAAAGCCGAAAGT
TGATTCTATATTCCGACATTTAAAACGTTAGATTTAATATGATCCATAAA
GGCTTTAGAGAAGCATGCGGCGTCTTAGTAGCAAATTATTTAAAAGTGAA
TCTTCTGCCATTAAAAATTGCCATGTCAGTCTTTTGACTGTTTTTTTGGG
AATCTTTAGCCTGCGGtttcaaaattctttctttGTACTATATTTATGCT
CATCTCTTATGTAAAAAATGCTTCTTACATGACATTAGTACGAATCCCAA
TTCCTTCACTTTGAATTTACAGGGGCATCCTGTTACGACAAAGACGGGGA
AAGAAATTGTAAAAGCTGGAAAGACACCAGTAACTTTTGCAATCGACCAG
ATGCTGATCAATATTGCGCNNNNNNAAAAAATATGGGAATTCTTTTTCAG
TTACATCTTCGCGATCAACGAAAGCAAAATGACGATCTCATCGAAATCCA
ACGCCTCAGAATCTCTCGGAGGATTTGAAATGACCGACACGGACGTTCGA
CAATTGAACAAATTTTACAGCTGTCCATGTGCAGATCATATGTTCGGCTG
TGAGTTTATTACAAGCATGTGTGGACAGTTTAGGACTCAACAGTATTGTC
AGAAAAGTTGTGGCTTCTGCCACACTAGCGAGAATCCTCCAATGTCTTCA
ACGGTTTCCTCTTTAACCACAACTATGTCAAATAATACAACAACCTCCTA
TACGACAGGAAAAAGTCTCCCTACAACGAAAGTAATTCCTACGGCAACTA
CGACCATCCAAACAAAGACGACAATAACTACCATTGTTTCTTCTACACGG
GCCGTCATTACACAAACAACTTCTCCTGAGACAACAACGACCATATCTAC
TCCAACAACGGCCGTCCAATCGACTGCAACTGCCCTTCCAACGACGACAT
CGACTACCAGGGGAGTAGGAAACAATACATGTTTAGACATAAACCCATGT
TGCACAGACCTCGCAACACACGGGTTGTGCAACAAAAGTGAATATATCCG
ATCAATATGTAACAAATCGTGCAACAAAGAATGCAGTGGTTCAAATTCAA
CAGAACTTTTGGCCACAACACGATCGTCTTTCTTTGGAGACGAGCCACCA
ACACCTTCAAAAGCAATAACACTGTTTGCACCATTCAGTAGCTCATTTCT
TTCACTGTTGGTGAATGTACTTTGGAGATTTGGATACACGTGAGATCCGT
ACGGAAAGATCTTTTGGTTAATGAACGATAGAGGAGTTAAGTTGACGCTC
TTTAactcgattttcaagggaaatttgatttttaacggATAAGTAagcgt
atcaaatagtagactagagtctacttctgactgaactttgctttctgatg
attttgcTGGCGCTGAGTCCAGTAAAGTAGACTGGAGAATACGgcaatct
tgaattttttcattttgttttaaaaattataagttaactaaaatattaaa
accccatcaaagtttatgagactataataaaaatatgaaaatacctccta
aatttgaaaaaagaaactggTCTATATTGGTCATGGTTTTCTGTTTGCTT
TTCTttaaaaagggactggatctaaTGGCACGGATTTGCTACCATGTCGA
GTCGGCCAATTAacaccgggccacttatcagtgCCATCCAGTCTATTAAA
AAGCAATGTGGCCCGGGCtaatcgaatagtagagcgtcgtgaGGCTCTTG
aggacggtgactttcaatatttgaGAGCGTCAAGCGATTTCGTAGTTGAT
AGACATCAATGGTTATTGTCAAAGAAAAATGAACTTTGACCTGACTGACA
TATTTTTGAAcctttcaattattttgtttagacagttttgttaaaatttt
caaataaaattttttagttATACATCGTTTCTATTCTTAAGAGTATCAGC
AGATATTTAAAATCCAATTATATGCGAATTAATTTCATGTCTATTTAATT
AGGTTGATTGAAAATCGATACTGGAGAAAATATTTGACTCAAAATATTGA
TTCCAATGAAATGGGAAAAGTCACGCATTTCCCAACACCAACAAtgtaat
acaaaaaaaatatgcAACATGAATTTGCAGTCGAGAATTTTGCTCGATTA
CTTTGTTTGAGCCAAACAAACAAGACATCGAgacaaataaaattataaaa
ggCTACGAGTTGTGTTTGACTGCAACAGTTCTTTACAAACCAATTCAATA
TGCTGAAGCTTTTGGTGACGCTTTCATTGGTGACATGCCTATGTAGGTAG
ACTTCCAAAATTTATTCATTTCACTTGTATCTTGTATGAAAGCCGAAAGT
TGATTCTATATTCCGACATTTAAAACGTTAGATTTAATATGATCCATAAA
GGCTTTAGAGAAGCATGCAGCGTCTTAGTAGCAAATTATTTAAAAGTGAA
TCTTCTGCCATTAAAAATTGCCATGTCAGTcttttgactgttttttttgg
GAATCTTTAGCCTGCGGtttcaaaattctttctttGTACTATATTTATGC
TCATCTCTTATGTAAAAAATGCTTCTTACATGACATTAGTACGAATCCCA
ATTCCTTCACTTTGAATTTACAGGGGCATCCTGTTACGACAAAGACGGGG
AAAGAAATTGTAAAAGCTGGAAAGACACCAGTAACTTTTGCAATCGACCA
GATGCTGATCAATATTGCGCAATTGCGCAAAGACTTGTGGGAAATGTAAT
GGCGGCGGTGGTGGTGGTAGCGGCAATGGTGGTTCCTGTGGCCGTTCGTT
TGCACCCCAAGGGCGGGTGGTGAATGGAAAAGATGCAGTGCCAGGTGCTT
ATCCATGGATGGCTTCAATCATGATGTACGGCAAACACTTCTGCGGAGCC
ACCTTGGTTGCGCCCAACTGGGTATGCATTCCATTAAGCTCATAAAAAGA
CACCGTATTAAATGCCATCATCATGTGTTGTAGTGGTGACCACGGCATTG
ACTCCAAACTTTCATATCCCTTCCTCTCCTGAAAGTCTCAGAGCCTTTCG
AGCTGATAACATCATTCCATTATTCTATAATATCATACAATCCGACCGAA
CTGATTTGTAATACCTTGAAAATAATACAAATAAGCTGCTTTTTGTTGTC
TTGTGAAAAGTCCAATGCcttttttaatcatttcaaTACCTTTGAAATTT
CAGGCAGTTACAGCAGCTCACTGTGTTGATTTTATAAAACCCCATCAAGT
GCCTTACTGGTTGATAAAGCTCGGTGCACACGATCACCGTCAAGTGGAAG
CCTCCACACAAACATATAACCTCAAAAGAATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062393-exon-scaffold_364-1491911889:320514..320655 | TCONS_00062393-exon-scaffold_364-1491911889:320514..320655 | Clytia hemisphaerica | exon |
| TCONS_00062393-exon-scaffold_364-1510915933:320514..320655 | TCONS_00062393-exon-scaffold_364-1510915933:320514..320655 | Clytia hemisphaerica | exon |
| TCONS_00062393-exon-scaffold_364-1575043694:320514..320655 | TCONS_00062393-exon-scaffold_364-1575043694:320514..320655 | Clytia hemisphaerica | exon |
| TCONS_00062393-exon-scaffold_364-1491911889:323287..323584 | TCONS_00062393-exon-scaffold_364-1491911889:323287..323584 | Clytia hemisphaerica | exon |
| TCONS_00062393-exon-scaffold_364-1510915933:323287..323584 | TCONS_00062393-exon-scaffold_364-1510915933:323287..323584 | Clytia hemisphaerica | exon |
| TCONS_00062393-exon-scaffold_364-1575043694:323287..323584 | TCONS_00062393-exon-scaffold_364-1575043694:323287..323584 | Clytia hemisphaerica | exon |
| TCONS_00062393-exon-scaffold_364-1491911889:323867..323997 | TCONS_00062393-exon-scaffold_364-1491911889:323867..323997 | Clytia hemisphaerica | exon |
| TCONS_00062393-exon-scaffold_364-1510915933:323867..323997 | TCONS_00062393-exon-scaffold_364-1510915933:323867..323997 | Clytia hemisphaerica | exon |
| TCONS_00062393-exon-scaffold_364-1575043694:323867..323997 | TCONS_00062393-exon-scaffold_364-1575043694:323867..323997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:320514..323997 + |
Blast
The following BLAST results are available for this feature:
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