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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062375 ID=TCONS_00062375|Name=TCONS_00062375|organism=Clytia hemisphaerica|type=transcript|length=685bp
ATCTCCATTCTCGCTCTCGTCTTTGATATCAAATTCAACTCGATACATCT
CAAATTCTTTGCTGATCATTGAATCAGTTCTTTCAAGTTTATGATTCTTC
CTAAATTTGAATAAACGTCTTTCATACTCCATCATGATTTCATGATTTTC
TCGGACAGCAAATTTACTTCGCCACAATCTGAAGAAGAGGACAAGCAAAG
CTACAATTGCTGGCACTATTACCATAGCTTTCAAACCATCCTCACTATAT
CTCGATTCCCATCTTGTTAAATTACCACAAAACGTATCATTCCCAACTGT
AATGGGTAGCTTGAAACATTCGAATACAGTATTTTCTGTAGTGTTGTTTA
ATGTCGTCATGTTTAATGTAGAACTGTTTCCAAAAGCCATTGTTGCGTTT
CTTAAGCTGTCTTGATATGGAAATGATTCTGATTCTCAACTGTATTTTCG
AGCTAATTCTTTGCTTTTATGATGACTACCTCTATGCATTATCACAGATG
ATGAAAACCACTTTATTATGCCATTGCATTGATTGGttaataatcttttt
ttataCAAACTTTTTATTGTCTTATTGTCTCgggtattttattgatttta
atcaCTTCACTTTAGTTACGTGCTTGTGCGATGCACTGAAATGAAACTCA
TGCTTGAACTCATGTGagaaattgtttattttctG Run BLAST on NCBI transcript from alignment at scaffold_364:150030..155595+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062375 ID=TCONS_00062375|Name=TCONS_00062375|organism=Clytia hemisphaerica|type=transcript|length=5566bp|location=Sequence derived from alignment at scaffold_364:150030..155595+ (Clytia hemisphaerica)
ATCTCCATTCTCGCTCTCGTCTTTGATATCAAATTCAACTCGATACATCT
CAAATTCTTTGCTGATCATTGAATCAGTTCTTTCAAGTTTATGATTCTTC
CTAAATTTGAATAAACGTCTTTCATACTCCATCATGATTTCATGATTTTC
TCGGACAGCAAATTTACTTCGCCACAATCTGAAGAAGAGGACAAGCAAAG
CTACAATTGCTGGCACTATTACCATAGCTTTCAAACCATCCTCACTATAT
CTCGATTCCCATCTTGTTAAATTACCACAAAACGTATCATTCCCAACTGT
AATGGGTAGCTTGAAACATTCGAATGCAGGATTTTCTGTAGTGTTGTTTA
ATGTCGTCATGTTTAATGTAGAACTGTTTCCAAAAGCCATTGTTGCGTTT
CTTAAGCTGTCTTGATATGGAAATAATTCTGATTCTCAACTGTTGATTCC
GAAGAAACTTATCTCAGGAAATCAGGAAATGGACTCAATCGCTCCGATAA
AACGGTATATTGAAACGATAGGCTagaacaaaaaatacaaaactacTTTA
GAAAAATGTACAAAACTATAGAAAATCTCTAATCCAGGTACTGTAGAACA
GAAAAAAGGCACTCAGAAAAACAAATGAACTAAACTGAAATCTAACATAC
TAATGCTACATAGATAAATAATACTCACTAAATTGACAATGTTTTGGGGC
TAGAAGGCGTCAGCAGTCTCATTCAACAAGTGTGGAAAAATATCAAAACG
TTTGTGAACTATATCACTTCATCATTCAACATCTCTCTTGCTTACAGTAT
TCAGATGTGAATGAATGATTTCTACTGACAACTCCTAGTTTTTATATTAA
TTACTAGATAATTACTGTATGTACAAATTAATTACTTTAATAAAAGAAAA
TGCGTATAATAAACGAGACAAAATGAATGACACAAACCCAAAGGAAACCA
AGAGCAACAGAAACGAGACAAAAGAGATAGGAAACAAAAACAAAAGACCA
AAAGATGACGTAAACCAAGTACGAGAGCAGCCAGGTTTCGCTGCTTTACC
TCGGCAGTTTGCCACTTACAAAATATAAAGTTCTACTTGATGTAGCCCCC
AAAACTGTGGCATGTTATACATATTCTGttaggccaattatccgtgagtc
tgaaaatttaagaatcgcaatgcgaaaatttgatgaagaagaaaatgaag
acttttgcgaagaagattatttcaactttgaagagcttatttccggcgaa
gaaaaaacattttgaaatttttattgcgctagatggtgtatcttttacct
aactaaaattattttttcggaaaatttttctaaatgcttatttgcttcaa
aatctcgaaaattgtggtttttgaccagttttcgatcccaatttttgata
gaaaaacagccataacttgtgatgcattaatttagaatgTTTTTCCGAAA
GAtctaaaacagttcaattctttgcagaaagtttgaaagaacttcgaaac
aaaaagggtAATTACCAATTAAAACTtaacactttttataaaagaaggtg
atgcaacatattctttttaaagttcataacgtcatttttgcaattaaatt
cttaattactcataagggatttgattaaaagacaatttaaaaaggcaatt
ctttgttaaaagtgttaaagaacctaaaacataacttttatgttcaaata
ctaaaatcaattttccgactatggtcagagcccttaagactGGTAACTCt
gccgactgtaaactcttttcggcaaaaaaacccggTTGCGTGTACGAAAA
TAAGtgccaaacaaaagaaacactATCAAAACTATTCCTTTGCAACCAAT
TACGATATGCCAAATGCTGGGATGTGTAAACCATCGATTTTGAACTCCCG
ACGGGGCTAGAAAGAAAACTCTCGGATGGGAGATAAAACAACTTATTTCC
CATTANACCATCGATTTTGAACTCCCGAAGGGGCTAGAAAGAAAACTCTC
GGATGGGAGATAAAACAACTTATTTCCAATTTAAAACGTGTGACcagcgt
ggttttcacacaaacgccagattgcaAATAAAATCTAACGCCGggtaaaa
acaaagaaaacgctagatacaatccgtcatCCAACAGCGGCTTAGATTTA
AGAGCTATGTCCAGTACACCTGGTGAAAACCAGAATTGTACTTTGAGTTT
GACAGAATTTATCTCCTAAATATTGGAaatcgattttgaaaaaatattag
ggagataaaattcaaaaaattacagTATGACTATTCTTTCCATAAGTCTA
TTCTCCTTAATAAAAACACGAAATAAATATGCAAAACATTAGAGACACAC
ATACACACACAGACACAGCAGATTTTGGTTTACCGCTGCTCGGGAGTCCA
AAATAAGTAATTACCCTCTGGGGAAATTCGTTGGTTCAAAATCAGTACAA
ATTTTCGGGGAAATGCGCTGATCAAATTGGAAGGAGATATTGAAGATAac
accaaattttagttgaccttGGCTCGGGCGTCCAAAATAAGTAATAAGTT
TCTAGGAAAATTCGTTGATCAAAAATCAGACCATGGActgattttggacc
accgaatttccccggagatAAATTACTTATCCTGGACGCTcgagccaccg
tcaaccaagATATCTATTATCTattcacgttttgacctctgcGTTTCGCC
GGAGAAAAACTGATGATATTGGACCACTGTATTACTCCCGGGAATGGCTA
CTAAAATTGGACCACCACATTATCCTGGAAACTTTAGTCGAAAATGGTAT
ATTAGGGAGATAATGATGTAAATCATTTGCAAAGGTCTTTCGCCGGAGAC
CAGCGCAAATTTTCCTCAGTACTGGACATGAGTGAAATTTAAAGCTtgac
tttttcttgttttaaaatcCAACACTGTAAACTCTATCAGTGGAATGATG
TTTATACATACATGCCACATACACACTTTCAAATTATGAAATGtaagttt
aaaattttgaaaacataaTACTGAAACGTCCAAAGATGGAGCCAAAATTA
CTAGTTTGTATAAAAAAACACGTGTTACTTAGTGACCACAATTCTAGGAA
TTTATTATTTGCATACAAAGTATTTGAACCTCCTGATTGGGTTTTCTATG
AATCTCCATCTTTATTTTTAGTAGCCATGAGAACGGGcttgaaaaatagt
ttttctaCGAACGGTCCATAGATCGCtcctttttgataattttcgccTAA
ATGATTATTgctaaaatgttcttgaaatgcTTGATTTTTAGAATCGCTGA
TTTTCTTCTCGTAAaggtttgaaagtttgagaaaaatGTACTGTAacggt
atgaatttcaccgatttttttgcgattttccGACCCTGCCAGATAtcatt
cttgaaaatttttagtgatttagtGATCATGTCAGATGTTTCTAGAACAT
GACCAGCATTCAAAATTTACTCTTactaaatttttcttataaaaaaacat
gaagaCAAACAAAAGACGGTTTTTCAATACCTTTTAtttaattcatgaaa
aaaaattttttcgaaaatgtttatatttataatttttgaagttATGAGGC
TAAAACAGAGCTAAGATTAAAGTGTCACAATTtaaacaaaaagttttgaa
ataacaaaagaaataattGTTTATACATAAATCTTACAAAAACGaagcaa
aaaattgaattagTCCATCCAACACACTATCTAAAAGTATCGGTGTTCAT
GGTAATTAGTTTTCAGAAGAAATATTTCTCCAGTGTAGAAGAACGAGGGT
TCAACCGAAACCAAACATGTATGACAGCGTAAACAATTTGAATTGTTGCC
AAAGGCGTGAATGTTAGAATCACCACAAGGTAATCTATTCCTCTCATACA
ACCTGAATCAAAAGGACTTTGGAATATCTTTCCTCCATCCTCAACAGTAA
AACAGGATCGGTCAATTTTGCCGGTACCGTATTGGTAAGTGGAACCAATG
ACACGACACATGGTTGCCATGGCGATTGGGATCATCATATAGGAAAAAAA
CTTCATCTTGACTGATCCGTCTTTCTCTTGGTTAGGGTCGAGTGGTTTCA
TGTTGGCCCGTCTTCGATGTTGATTCTCCAGTTCATCAAGCTTCTGAATA
TTTTCTTTACACATTTGTTGTAATGCCTGAGCTGCAAGCAGTTCAGAATC
GATTTCCAAACCATCCTGTTTACGTTGTTCGATGATATCATTAACGACAT
TACCTGAATCTTCATTTCCATCCTTGTCCATAATCTTCACCAAACGAGCA
CGTTTTGCATTTTGAATAGCTGAATAAATAGTCCAGCAAGTCATGACCAG
TTGCATTGCACTCTTCACAAACAAATACCAATCGGTTTTTCGGTTGACAA
ATTTGTCCATATAAAAATACTCCAAGATAAGCTGAATAGAACCTATGAAC
AAAAATGTTATGAAGGATTTCATATCTTTCATAAAAACATCGTATTGTCC
CACTGGACAACAATCACAAGAACAAAATTGGACCATGATGCTTAACCAGA
TGAGTGCGTAAATTACATTAGTGACGTAAGCGTTTCGGTGAACAACATTA
TCGAATATTTGACCAGATTCTAATTGGTATAGCAAGAAGCAATCCAGGAT
CACATCCAGAACTTCCAAAGCTTGTTTAACATACGTCAGACATTTGATTG
TTACGAAAGTTTTGAGTGATATGAATTTCCACCCTAAATCTTCCACTTTG
AAACACCGGCCGATCCCCTGGAAACATCTCACAATACAATTCAATTTGAT
TTTATCTTTATCTCCATTCTCGCTCTCGTCTTTGATATCAAATTCAACTC
GATACATCTCAAATTCTCGGCTAATCATANCTCCATTCTCGCTCTCGTCT
TTGATATCAAATTCAACTCGATACATCTCAAATTCTTTGCTGATCATTGA
ATCAGTTCTTTCAAGTTTATGATTCTTCCTAAATTTGAATAAACGTCTTT
CATACTCCATCATGATTTCATGATTTTCTCGGACAGCAAATTTACTTCGC
CACAATCTGAAGATGAGGACAAGCAAAGCTACAATTGCTGGCACTATTAC
CATAGCTTTCAAACCATCCTCACTATATCTAGATTCCCATCTTGTTAAAT
TATTACCACAAAACGTATCATTCCCAACTGTAATGGGTAGCTTGAAACAT
TCGAATACAGTATTTTCTGTAGTGTTGTTTAATGTCGTCATGTTTAATGT
AGAACTGTTTCCAAAAGCCATTGTTGCGTTTCTTAAGCTGTCTTGATATG
GAAATGATTCTGATTCTCAACTGTATTTTCGAGCTAATTCTTTGCTTTTA
TGATGACTACCTCTATGCATTATCACAGATGATGAAAACCACTTTATTAT
GCCATTGCATTGATTGGttaataatctttttttataCAAACTTTTTATTG
TCTTATTGTCTCgggtattttattgattttaatcaCTTCACTTTAGTTAC
GTGCTTGTGCGATGCACTGAAATGAAACTCATGCTTGAACTCATGTGaga
aattgtttattttctG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062375-exon-scaffold_364-1491911889:150030..150346 | TCONS_00062375-exon-scaffold_364-1491911889:150030..150346 | Clytia hemisphaerica | exon |
| TCONS_00062375-exon-scaffold_364-1510915933:150030..150346 | TCONS_00062375-exon-scaffold_364-1510915933:150030..150346 | Clytia hemisphaerica | exon |
| TCONS_00062375-exon-scaffold_364-1575043694:150030..150346 | TCONS_00062375-exon-scaffold_364-1575043694:150030..150346 | Clytia hemisphaerica | exon |
| TCONS_00062375-exon-scaffold_364-1491911889:155228..155595 | TCONS_00062375-exon-scaffold_364-1491911889:155228..155595 | Clytia hemisphaerica | exon |
| TCONS_00062375-exon-scaffold_364-1510915933:155228..155595 | TCONS_00062375-exon-scaffold_364-1510915933:155228..155595 | Clytia hemisphaerica | exon |
| TCONS_00062375-exon-scaffold_364-1575043694:155228..155595 | TCONS_00062375-exon-scaffold_364-1575043694:155228..155595 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_364 | supercontig | scaffold_364:150030..155595 + |
Blast
The following BLAST results are available for this feature:
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