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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062370 ID=TCONS_00062370|Name=TCONS_00062370|organism=Clytia hemisphaerica|type=transcript|length=532bp
CTTAGAGTAAAAGCACAACTAAAAACATGGATATTGATAATTAATATTGC
TGTGAAAGGCGAAGGTGAAAGGTTGTGTACAATCAAAGATCATCTTGTTT
GAAGTAGAGATGGATGGTCGTGAAAATGttgaaatcgaaatcgaaagtga
aagtgactgGGATAGTTATGAAGATGAAAATCCTTCTGAAAGTGAATTGG
ACAGTGACGTGGAAATCAAAAACTCATTTGCCACCTCTGCAATGGATAGA
TTGGGGAACTTGCTATCTTCAATTACAGAGAATAATGAAAATGaacaaat
cacaaaagaaatcCATTCAGCCCTATCAATgGTCCATCAATCAGGAATCC
AATACTTTGGATATCTATTGGAAAATGATAATTCCAGAATTGAGAAAGGG
ATTGAATCATTGAAAGGCGTAGATCAATTTATTGTAAGAAGTATGGAAAA
AGGTAGCAAAGAATTACCAGAAGCTGTACAATTTTCATTTCACTTGGCAG
AATTGACAAGAACTGTCACTGGTGAAACGCGA Run BLAST on NCBI transcript from alignment at scaffold_364:18165..20074+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062370 ID=TCONS_00062370|Name=TCONS_00062370|organism=Clytia hemisphaerica|type=transcript|length=1910bp|location=Sequence derived from alignment at scaffold_364:18165..20074+ (Clytia hemisphaerica)
CTTAGAGTAAAAGCACAACTAAAAACATGGATATTGATAATTAATATTGC
TGTGAAAGGCGAAGGTGAAAGGTTGTGTGTAAGTTGATTTCATTTAATTT
AATCTTtattgtatatttatttttattcttcCACTGCATCTCTTTAGGAA
AATATTGTATTTAAAAAAACccaatttcaagtttttatttttttgtcagA
TTCGAAATCAGTGATCTATTAGATTACACGATAACCTCTAATCAAAAGAT
AAAAGATTGTTAACAGAATCGAAAAAGCAAACTAATAAGACATTTTTCTC
ATCCTACAGACAATCAAAGATCATCTTGTTTGAAGTAGAGATGGATGGTC
GTGAAAATGttgaaatcgaaatcgaaagtgaaagtgactgGGATAGTTAT
GAAGATGAAAATCCTTCTGAAAGTGAATTGGACAGTGACGTGGAAATCAA
AAACTCATTTGCCACCTCTGCAGTAAGTTAAGATATGATAAAAAAGGAAC
TCAACTTAATGTACCATTTATTTTGGTTTAACCCCATTCATACTTGGCTT
GTTTTATGGGCGGCTcacaactgggggggggggtattatcctgtaccacc
ccttaacttttgatctagctAGTCTTTTTGAATGTTGAATTTGACACATG
AGATCCTTGTCATAttaggtaacttttgacaaaaaagtcttttgatgacg
tcactcgtcataaggctttagaaaaatattcaaagtttCAAAGGCTAATT
TCATCCTATGTATttaataaattacggtttaaacgatatatttgacataa
aaaatccaTGTACTGAAAATGTGTCAATTTTAATGACACTTTTACTGACA
GAGATATCATTATGTTTGCTCAAAGGGgtaaaaaatgtgtcaaaaattat
tttattttgaagctaaatgaAAATTAGGAATTTTACCGAAGATTTCGAAA
CGTCCTAAGCCCTATTATTTTAGAAGCTGTTAACATTAGTTTCCCCACCG
AATAGGGGAATTGGGTTAAACTGATGCATTAGAAATGCAATCATTCAACA
GAAGATAAGCAGTATACATTTACTTGTCAACCAGCATGAATCTTCTATTT
CTAGATGGATAGATTGGGGAACTTGCTATCTTCAATTACAGAGAATAATG
AAAATGaacaaatcacaaaagaaatcCATTCAGCCCTATCAATggtaatt
gtttttttatttttaacgcTTCAATGATTTAAATTTCTTGTCTTCAACTC
TTTACACCCTAAAGTTAATTTAAGCAAAGGTTTTACTGTAACTACTTTTA
AGTTTTTCAACCACCAGCCTTTATGTAGAAATTGTATTCCAGCCACCCCT
AGAAATAATTTCAATGTTGCTGGCCGTCTTTCTGAAAATAAAGTCTAATG
AAAtgaaagataaagaaaaaagaaattgaattgttttctattttttaaag
gttttttctGTACACCCTTTGGAGTCTCGTATTAGCATTCTCGTCTCAAA
TTATAGTTTTTAGAGACTATAGAAGAGTTAAGCCGGTCTAGTTGCTTAAC
AAGAATGACTGTATCATTAAGGGTCTCAATTGAGTCAGTTCTATTCCTGC
CTGAAACCTTACAAAATGTCGTTTGAAAAATGGTTTGAATTCATACACAT
TAAGGTCTCTTTGTAATCTTTAATTAgaatttttaatggtttttacTCTT
TTTTGGTAGGTCCATCAATCAGGAATCCAATACTTTGGATATCTATTGGA
AAATGATAATTCCAGAATTGAGAAAGGGATTGAATCATTGAAAGGCGTAG
ATCAATTTATTGTAAGAAGTATGGAAAAAGGTAGCAAAGAATTACCAGAA
GCTGTACAATTTTCATTTCACTTGGCAGAATTGACAAGAACTGTCACTGG
TGAAACGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062370-exon-scaffold_364-1491911889:18165..18242 | TCONS_00062370-exon-scaffold_364-1491911889:18165..18242 | Clytia hemisphaerica | exon |
| TCONS_00062370-exon-scaffold_364-1510915933:18165..18242 | TCONS_00062370-exon-scaffold_364-1510915933:18165..18242 | Clytia hemisphaerica | exon |
| TCONS_00062370-exon-scaffold_364-1575043694:18165..18242 | TCONS_00062370-exon-scaffold_364-1575043694:18165..18242 | Clytia hemisphaerica | exon |
| TCONS_00062370-exon-scaffold_364-1491911889:18474..18636 | TCONS_00062370-exon-scaffold_364-1491911889:18474..18636 | Clytia hemisphaerica | exon |
| TCONS_00062370-exon-scaffold_364-1510915933:18474..18636 | TCONS_00062370-exon-scaffold_364-1510915933:18474..18636 | Clytia hemisphaerica | exon |
| TCONS_00062370-exon-scaffold_364-1575043694:18474..18636 | TCONS_00062370-exon-scaffold_364-1575043694:18474..18636 | Clytia hemisphaerica | exon |
| TCONS_00062370-exon-scaffold_364-1491911889:19269..19358 | TCONS_00062370-exon-scaffold_364-1491911889:19269..19358 | Clytia hemisphaerica | exon |
| TCONS_00062370-exon-scaffold_364-1510915933:19269..19358 | TCONS_00062370-exon-scaffold_364-1510915933:19269..19358 | Clytia hemisphaerica | exon |
| TCONS_00062370-exon-scaffold_364-1575043694:19269..19358 | TCONS_00062370-exon-scaffold_364-1575043694:19269..19358 | Clytia hemisphaerica | exon |
| TCONS_00062370-exon-scaffold_364-1491911889:19874..20074 | TCONS_00062370-exon-scaffold_364-1491911889:19874..20074 | Clytia hemisphaerica | exon |
| TCONS_00062370-exon-scaffold_364-1510915933:19874..20074 | TCONS_00062370-exon-scaffold_364-1510915933:19874..20074 | Clytia hemisphaerica | exon |
| TCONS_00062370-exon-scaffold_364-1575043694:19874..20074 | TCONS_00062370-exon-scaffold_364-1575043694:19874..20074 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_364 | supercontig | scaffold_364:18165..20074 + |
Blast
The following BLAST results are available for this feature:
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