TCONS_00062362 (transcript) - C. hemisphaerica

Overview
NameTCONS_00062362
Unique NameTCONS_00062362
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00062362 ID=TCONS_00062362|Name=TCONS_00062362|organism=Clytia hemisphaerica|type=transcript|length=286bp
TATAGATTGAGGTGTGGATAAAAATCGAGCAtagaattaaaaagaaaata
ttttgtattcTCGATATGATAAAAACTAAGATTTGTAAAAAACATTATGT
CATTTTTAATATTaatacattattattatttaaacTAAACAAAGACTTCA
TTGTGCATTAcaacaaacaaatattttctcATACTAACATATACGATTTA
TAATGCATGTGCCAGGGAAGACATTATCACTGCAAAAATTGGGGACGCCG
TATACTAAAACAAGTCTAACTTCGCTGGAAAAAANN
Run BLAST on NCBI

transcript from alignment at scaffold_363:103902..104187

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00062362 ID=TCONS_00062362|Name=TCONS_00062362|organism=Clytia hemisphaerica|type=transcript|length=286bp|location=Sequence derived from alignment at scaffold_363:103902..104187 (Clytia hemisphaerica)
NNTTTTTTCCAGCGAAGTTAGACTTGTTTTAGTATACGGCGTCCCCAATT
TTTGCAGTGATAATGTCTTCCCTGGCACATGCATTATAAATCGTATATGT
TAGTATgagaaaatatttgtttgttgTAATGCACAATGAAGTCTTTGTTT
AgtttaaataataataatgtattAATATTAAAAATGACATAATGTTTTTT
ACAAATCTTAGTTTTTATCATATCGAgaatacaaaatattttctttttaa
ttctaTGCTCGATTTTTATCCACACCTCAATCTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_039076XLOC_039076Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00062362-exon-scaffold_363-1491911889:103902..104187TCONS_00062362-exon-scaffold_363-1491911889:103902..104187Clytia hemisphaericaexon
TCONS_00062362-exon-scaffold_363-1510915933:103902..104187TCONS_00062362-exon-scaffold_363-1510915933:103902..104187Clytia hemisphaericaexon
TCONS_00062362-exon-scaffold_363-1575043694:103902..104187TCONS_00062362-exon-scaffold_363-1575043694:103902..104187Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_363supercontigscaffold_363:103902..104187 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.68414	4.84441	4.27232	2.82674	2.47044	1.46413	0.588804	2.20493	2.07991	3.07945	0	2.17212	2.57595	1.3123	1.88129	2.93043	3.8889	2.55439	2.08012	4.69013	10.6845	9.71146	12.9442	15.2035	0	0	11.9484	15.1607	15.1145	9.05163
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00062362 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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