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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062356 ID=TCONS_00062356|Name=TCONS_00062356|organism=Clytia hemisphaerica|type=transcript|length=917bp
ccaacctactttagagcacttacaaatcgattgtggttcaaaaacttccc
ggtggatttccctttttttctcaaatattatgaccttgattgtggCTCGA
ACACCCATTTCTGGGTGCTTATTACGAATTTTCTACCGAAAGGACTTTTT
TGTATCTACAGGCCGTAGTAAGGTCTATATCCCTTTTCAACGTTTGTTTC
TCTCGTCGAATCAAAATATTATCGAAGCACTTATCTTTGGTATCGTTACA
TAAAGATTCCAATACACGTTATGCCAAAACATTACCGatctattttgaag
aaaagtacaaacaagaattttttaaatcttttccaGACAGGTACGACATC
CATCGTTACGACACCACGATAACGATACCGACAAACTTGAAGGACGGTTT
CTATGTCCTTCAAACGACTATGCTTGTCGGGAACGACGGCAAACCTTACT
ACAGTTGTGCCAAATTGTACATTAAGAATGGAAACCAGGCCTTCGACTGT
AGTAAAAAGGATTCTGGTATTTTGACTTATTCTTGCTTGAAAACCGGTGG
ACCATCATTAAAAAATAGTGCCATCGAAGCAGGCACAGAGCGCGGTGATT
TCTGTTACCATTTGGACGGCACTATCGGAGAAGTCGACGACTATTTAGAA
GACGTACCGATAAACGTCGAATGTGATCCACGATTGTCATGCGAGAACAG
TGTTGATGATAAATGTGTCAATGTTCCTGGTATGAATAGTATCATGACAC
CAGAATCTCACCCAAAGAAAGAAGGTTGTCATATTTGGAGTCGAACACCT
GATGCAGATCCTACTTGTTCCGACGGGATCAAGAATCGTGATGAAGAAAA
AATCGATTGCGGTGGAGCCTTTTGCGAGGCGTGTCCCTTCGTGGAATACA
AAGGAGCTTACTACAGG Run BLAST on NCBI protein sequence of TCONS_00062356-protein >TCONS_00062356-protein ID=TCONS_00062356-protein|Name=TCONS_00062356-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
MLVGNDGKPYYSCAKLYIKNGNQAFDCSKKDSGILTYSCLKTGGPSLKNS
AIEAGTERGDFCYHLDGTIGEVDDYLEDVPINVECDPRLSCENSVDDKCV
NVPGMNSIMTPESHPKKEGCHIWSRTPDADPTCSDGIKNRDEEKIDCGGA
FCEACPFVEYKGAYYR Run BLAST on NCBI transcript from alignment at scaffold_363:121143..122810- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062356 ID=TCONS_00062356|Name=TCONS_00062356|organism=Clytia hemisphaerica|type=transcript|length=1668bp|location=Sequence derived from alignment at scaffold_363:121143..122810- (Clytia hemisphaerica)
CCAACCTACTTTAGAGCACTTACAAATCGATTGTGGTTCAAAAACTTCCC
GGTGGATTTCCCTTTTTTTCTCAAATATTATGACCTTGATTGTGGCTCGA
ACACCCATTTCTGGGTGCTTATTACGAATTTTCTACCGAAAGGACTTTTT
TGTATCTACAGGCCGTAGTAAGGTCTATATCCCTTTTCAACGTTTGTTTC
TCTCGTCGAATCAAAATATTATCGAAGCACTTATCTTTGGTATCGTTACA
TAAAGATTCCAATACACGTTATGCCAAAACATTACCGATCTATTTTGAAG
AAAAGTACAAACAAGAATTTTTTAAATCTTTTCCAGACAGGTACGACATC
CATCGTTACGACACCACGATAACGATACCGACAAACTTGAAGGACGGTTT
CTATGTCCTTCAAACGACTATGCTTGTCGGGAACGACGGCAAACCTTACT
ACAGTTGTGCCAAATTGTACATTAAGAATGGAAACCAGGCCTTCGACTGT
AGTAAAAAGGATTCTGGTATTTTGACTTATTCTTGCTTGAAAACCGGTGG
ACCATCATTAAAAAATAGTGCCATCGAAGCAGGTAAGGCCCTATCTATAT
TGTAAAAGTATTTGGGTCAAGTTAAAGGTTCAATTTTCGGAGAAGTACCT
GGGTACAGGTAGTGAAGAATTCTTGGTCCTTTACCGATAATTTGTATACC
ATTTAGGCTGTCGACTCTGCAAGGGGTTGTATACGTCCTTTGAATTAAAA
AAAAAGGGAAAAAAGAAAGTTTGAAGTGACATCTAAGACAAACACCCTGA
TGGTCAAAACTCAATGAAATCTATAAATGATAGTAATAATATCAAAATAA
TAATGATCAAAACTTATGACGATCATAATCCCGATTTTCTAAAAAGAGAC
ACTATCTGCTGTAGATTTTGAACCATTCCTTAGACCAGCTACTAAATTGA
TTGAATTTTCCCTTACAGGCACAGAGCGCGGTGATTTCTGTTACCATTTG
GACGGCACTATCGGAGAAGTCGACGACTATTTAGAAGACGTACCGATAAA
CGTCGAATGTGATCCACGATTGTCATGCGAGAACAGTGTTGATGATAAAT
GTGTCAATGTTCCTGGTATGAATAGTATCATGGTATGTGTTTTTTTATAA
GAACATCCAAAATTTTGTAAGCCTTCGAATGTTCTTAACCTTTTGAATTT
TAAGTCTAAAAATGTTCTCATTTTCACCATTTTGTCAAAACTGTTATTTT
CTAAGAAATGGGTCCGTAAAGCCTTAAGATGTTCTTAACTTGCTCTTAAT
ATTTTGGGCACTGAAGCCATTTTGTTCTTGTATAGTTTGTTCTTATAATA
AAAACAACAAACTAATTAACATACAAACTTGAAGATATTATCTGTTGCCC
TCTTAAAACTTGTGTGATGTTATTGTCATCTCGTTGAAGCCTGCTAGCTA
GCTAGTTTAGATTATGAAATAACTGCTAATAATTTGTTCGAATTTAGACA
CCAGAATCTCACCCAAAGAAAGAAGGTTGTCATATTTGGAGTCGAACACC
TGATGCAGATCCTACTTGTTCCGACGGGATCAAGAATCGTGATGAAGAAA
AAATCGATTGCGGTGGAGCCTTTTGCGAGGCGTGTCCCTTCGTGGAATAC
AAAGGAGCTTACTACAGG Coding sequence (CDS) from alignment at scaffold_363:121143..122810- >TCONS_00062356 ID=TCONS_00062356|Name=TCONS_00062356|organism=Clytia hemisphaerica|type=CDS|length=1494bp|location=Sequence derived from alignment at scaffold_363:121143..122810- (Clytia hemisphaerica)
ACACCAGAATCTCACCCAAAGAAAGAAGGTTGTCATATTTGGAGTCGAAC
ACCTGATGCAGATCCTACTTGTTCCGACGGGATCAAGAATCGTGATGAAG
AAAAAATCGATTGCGGTGGAGCCTTTTGCGAGGCGTGTCCCTTCGTGGAA
TACAAAGGAGCTTACTACAGGGCACAGAGCGCGGTGATTTCTGTTACCAT
TTGGACGGCACTATCGGAGAAGTCGACGACTATTTAGAAGACGTACCGAT
AAACGTCGAATGTGATCCACGATTGTCATGCGAGAACAGTGTTGATGATA
AATGTGTCAATGTTCCTGGTATGAATAGTATCATGATGCTTGTCGGGAAC
GACGGCAAACCTTACTACAGTTGTGCCAAATTGTACATTAAGAATGGAAA
CCAGGCCTTCGACTGTAGTAAAAAGGATTCTGGTATTTTGACTTATTCTT
GCTTGAAAACCGGTGGACCATCATTAAAAAATAGTGCCATCGAAGCAGAC
ACCAGAATCTCACCCAAAGAAAGAAGGTTGTCATATTTGGAGTCGAACAC
CTGATGCAGATCCTACTTGTTCCGACGGGATCAAGAATCGTGATGAAGAA
AAAATCGATTGCGGTGGAGCCTTTTGCGAGGCGTGTCCCTTCGTGGAATA
CAAAGGAGCTTACTACAGGGCACAGAGCGCGGTGATTTCTGTTACCATTT
GGACGGCACTATCGGAGAAGTCGACGACTATTTAGAAGACGTACCGATAA
ACGTCGAATGTGATCCACGATTGTCATGCGAGAACAGTGTTGATGATAAA
TGTGTCAATGTTCCTGGTATGAATAGTATCATGATGCTTGTCGGGAACGA
CGGCAAACCTTACTACAGTTGTGCCAAATTGTACATTAAGAATGGAAACC
AGGCCTTCGACTGTAGTAAAAAGGATTCTGGTATTTTGACTTATTCTTGC
TTGAAAACCGGTGGACCATCATTAAAAAATAGTGCCATCGAAGCAGACAC
CAGAATCTCACCCAAAGAAAGAAGGTTGTCATATTTGGAGTCGAACACCT
GATGCAGATCCTACTTGTTCCGACGGGATCAAGAATCGTGATGAAGAAAA
AATCGATTGCGGTGGAGCCTTTTGCGAGGCGTGTCCCTTCGTGGAATACA
AAGGAGCTTACTACAGGGCACAGAGCGCGGTGATTTCTGTTACCATTTGG
ACGGCACTATCGGAGAAGTCGACGACTATTTAGAAGACGTACCGATAAAC
GTCGAATGTGATCCACGATTGTCATGCGAGAACAGTGTTGATGATAAATG
TGTCAATGTTCCTGGTATGAATAGTATCATGATGCTTGTCGGGAACGACG
GCAAACCTTACTACAGTTGTGCCAAATTGTACATTAAGAATGGAAACCAG
GCCTTCGACTGTAGTAAAAAGGATTCTGGTATTTTGACTTATTCTTGCTT
GAAAACCGGTGGACCATCATTAAAAAATAGTGCCATCGAAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062356-exon-scaffold_363-1575043694:122229..122810 | TCONS_00062356-exon-scaffold_363-1575043694:122229..122810 | Clytia hemisphaerica | exon |
| TCONS_00062356-exon-scaffold_363-1575043694:121679..121842 | TCONS_00062356-exon-scaffold_363-1575043694:121679..121842 | Clytia hemisphaerica | exon |
| TCONS_00062356-exon-scaffold_363-1575043694:121143..121313 | TCONS_00062356-exon-scaffold_363-1575043694:121143..121313 | Clytia hemisphaerica | exon |
| TCONS_00062356-exon-scaffold_363-1510915933:122229..122810 | TCONS_00062356-exon-scaffold_363-1510915933:122229..122810 | Clytia hemisphaerica | exon |
| TCONS_00062356-exon-scaffold_363-1510915933:121679..121842 | TCONS_00062356-exon-scaffold_363-1510915933:121679..121842 | Clytia hemisphaerica | exon |
| TCONS_00062356-exon-scaffold_363-1510915933:121143..121313 | TCONS_00062356-exon-scaffold_363-1510915933:121143..121313 | Clytia hemisphaerica | exon |
| TCONS_00062356-exon-scaffold_363-1491911889:122229..122810 | TCONS_00062356-exon-scaffold_363-1491911889:122229..122810 | Clytia hemisphaerica | exon |
| TCONS_00062356-exon-scaffold_363-1491911889:121679..121842 | TCONS_00062356-exon-scaffold_363-1491911889:121679..121842 | Clytia hemisphaerica | exon |
| TCONS_00062356-exon-scaffold_363-1491911889:121143..121313 | TCONS_00062356-exon-scaffold_363-1491911889:121143..121313 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_363 | supercontig | scaffold_363:121143..122810 - |
Blast
The following BLAST results are available for this feature:
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