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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062352 ID=TCONS_00062352|Name=TCONS_00062352|organism=Clytia hemisphaerica|type=transcript|length=830bp
ACTGGATCTTTTTCATAGGGTTTTAAAAATGTGATTTTACCCGGTTTTAC
TGACATCAAAGATTTCAGCTTGACCATGTTTCACAAGTATGCCTTCATGT
TCAATCTTCTCGTTATCTTGGACTTACAACAACACCAAACAGTTTGCTTT
GAAGAATGCTACAAGAAGGATGACAATAATCAATCGAACATGAATTGTAA
CGCCTCGCTGGCTCAGAAGAAATCTCGTTTACTCCACCTTCCCAATCATA
AAAAGCCTTCCAACAAGAAAGACAACATCTCTCGTCTCCTTGGTAACATC
AACAATTATCCACCATTAAACAACCCTCGTTACGtcattcaaaatggtag
acatcCAACGATTATTTGGTGGACAAACTCGTTTTATCCGCATGATGAAA
AAGACACCATTTTGCAATGTCCACGTGGTCCATGTCATGTGACCTCCAAC
AGAGAATATTATTGGTCAAACACAACAAGAGCTTTTGTTTTCTATGGAAC
ATCCTTTAGAGCAAATGATTTACCTTTGCCTCGATTGCCTCACCATGAAT
GGGCGTTAATTCATGAAGAATCTCCCAAAAATAATTGGATTTTGTCTGAT
TCTTTAGGTATAAGGTAAGCTCAGTATAAATAATTTTCAGTACGTACGCA
TCCAGAAGTTGAAGGCCTCGAaagctcttaacattttgacagccctttcg
attgacttccaaatttgccatactcaccaactttgccaaatccacaattt
caatgtcaaaagatcacagcttcatggcaaatttgtacatcgctactctg
ccattatgatttccgttttgtgatgcttag Run BLAST on NCBI transcript from alignment at scaffold_363:71356..74540- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062352 ID=TCONS_00062352|Name=TCONS_00062352|organism=Clytia hemisphaerica|type=transcript|length=3185bp|location=Sequence derived from alignment at scaffold_363:71356..74540- (Clytia hemisphaerica)
ACTGGATCTTTTTCATAGGGTTTTAAAAATGTGATTTTACCCGGTTTTAC
TGACATCAAAGATTTCAGCTTGACCATGTTTCACAAGTATGGTAAGTTCA
TTTCTGAGCAACATATAGAGCTCTCCATAATGAGAAATCAGAATCGTGTG
CAATATAACAATAATTTTTTATAGTCCGTCGTCACAGGTTTAATTTTCAG
AAAAAAAGATTAAACTACTTTTAGGCGTAAAAACTTTCGCGAGCAGAAAC
TTTCGCGAATCAAGACGTAAAATTGAGAATTTTCACATATGAAAAAATGG
CTTAGAAGGACTAATACTTCTTGGGATGGCTTGAAACATTTGTCCTTTGA
CTTATTAGTCTTTTACAGGCATAAAAGTCACAGTTTATTCAAAGTTTGAT
TTGAAGTTTTCCAGATTTTCTATTATGTCAAAAATTTTTCGCGAGCATAA
ACTTTCGCGAATGGCCCTTCCTAGAATTTTTAAAGATATTTACTTTCACG
AAAAGGGTCAAAATTCGTGAAAATCGCGGAAGTTTCTGCTCGTGAAAGTT
TGTACGCCTAAAGTATGATAAGTACTCACGGTAAAACATACATAAGATAC
ATGCTCTTTCGTAAACCATGAACATGTAAACGACTTGACATCTATCTTTT
ATTGTATCTTTGAAGCGAGCTTTGTTGCCGCCTGTATTTCAAAATTGGTA
TGAAAAATCCGACAACATTCCGTCATAATTTTATTTCTTTGAATTATTTA
GGTAAAAAGATTGATAGAGCTGGAACATTGCTCCTAATGTACAAAAAAAT
TATTTTCGAATTTTTTTACAAGTTTGCAATATATTTTATCAACATTTTAA
ACTCACTCACTTAAACATTTTCAACTACGTGTATACTTTTGAATCCCTTT
TGTCACTCCAATATTTTTTTTTTTGACTCGAAAAAAATAGCTTGCCAAAG
TTGAGAGCCTGTGTAATAAGAATATCAAAATTAGAATGTGACACTCTCTA
AAATTATTAGACACTTTTAACTCAAAATTTAGAAATATTAGTCGGAGTTT
TGACAAGCTGACGATAACTTTGCCTCTGTTATCTTTGTTATGATATAGAT
AAAAGACTTGAGAAGAGTAGAATGACAGAGACTTTTGTCGAAATTTTGAC
GTTGTCAGCAAGGTATTCCCAAGTGGTATATCATCAAAATCTATTGTTTC
ATTTTATGCTTTTAACGAGGCGGCAATGAAGCTAGCAGCCTTTTCTACAA
AAAGACAAAGGAGATGGATGTTCAGTCGTTTATATGTTCATGCGTAAACT
TAGCACATGAATACTAATTTTCCAAAGCTCCGATTCCGAACTACATAACC
GAAGGAATAACGTTTTTTTCGATAGTTGTTGCCAAAGTTAGTAATTAATA
ACCGCTACTTTTTAACGTCATCAAAGAATGATTCTAATGCTAAAGGAATG
CCGATATAATTATCTTGTTCATGCAAAGCAATCGAAAATAAAACATCAAA
ATGATTACTATAGTATAACTTTTACAAATCTTTTGAACAGTATCAGTTCA
TAAAAAACAGAGATTGCAACTTTGTATTTTTTGATCAACTTTTGATATTG
ATTTTCTTTTAAATCGACTTTTGAAATGCTTCCTTCCTTGTTAGCCTTCA
TGTTCAATCTTCTCGTTATCTTGGACTTACAACAACACCAAACAGTTTGC
TTTGAAGAATGCTACAAGAAGGATGACAATAATCAATCGAACATGAATTG
TAACGCCTCGCTGGCTCAGAAGAAATCTCGTAAGAAAGTTTTTTGAGTTT
TAAGCCTGAAAATGTTCTTATTTCACTATCTTTTTATTACTTGCATCCAT
TTCCCGAAATCAGGGCCGGTGGAAGCGAGGAGACTGGGGAGACTTCAGCC
TCCCCACTTTTGAATAAATGAGATTTCTTTTCTCAAATTCTAAGTAGATT
TTATCTCATTTTGAGCCTTAAGACTCCCCACTTTAACGGTTGTTCCTCCG
GGCCTGGAAATTGGTTTAAAATGTTCTTATATAGTATGTTTTTTAAAAAC
CTGTTTCTTTATAAGAGTTCCCGCACCATACTTCATAACTCGTTCCAGGG
TTCTATTCATGTCCATCAGTAAAATCAAAAACAAAATATTGGTGCAAGTG
GCTCTGAGGTTAGAGATTAGTATCAGTTTCTAGAGTTTGTAAATGCTTAC
TTTACTAAATTAAGCATATTTTCAATTTCATAATTGAAAATGATAACTAA
GGAAAGACTAAGGGCTTTAAGTCCATATTGAGTTTAAGTTAAAGCCCAAA
TAGCTGGAGAGAAGTCTTCAGCCTTTCTCAAGCAAGAAAAAGTGAAGCTT
TAAGATTTACACCACTTTTGGAATAACGGATTGAATCTAGTGCTTTCTTT
ACGGCGATGGATTTTACTTTAAAAACAGCGTCTATTTGAGAAAACAAACC
TTTCGGGACTTTAAGCTCAATATATTAGGGCTTTTAAGGTTTGCTCTTAC
CAGTGATGAAATAGCGATCAATGAAGGAACGGTGTGGTACATGGTTTTGT
ACATTTTATCGTTTTCTATACTACTACATAGGTTTACTCCACCTTCCCAA
TCATAAAAAGCCTTCCAACAAGAAAGACAACATCTCTCGTCTCCTTGGTA
ACATCAACAATTATCCACCATTAAACAACCCTCGTTACGTCATTCAAAAT
GGTAGACATCCAACGATTATTTGGTGGACAAACTCGTTTTATCCGCATGA
TGAAAAAGACACCATTTTGCAATGTCCACGTGGTCCATGTCATGTGACCT
CCAACAGAGAATATTATTGGTCAAACACAACAAGAGCTTTTGTTTTCTAT
GGAACATCCTTTAGAGCAAATGATTTACCTTTGCCTCGATTGCCTCACCA
TGAATGGGCGTTAATTCATGAAGAATCTCCCAAAAATAATTGGATTTTGT
CTGATTCTTTAGGTATAAGGTAAGCTCAGTATAAATAATTTTCAGTACGT
ACGCATCCAGAAGTTGAAGGCCTCGAAAGCTCTTAACATTTTGACAGCCC
TTTCGATTGACTTCCAAATTTGCCATACTCACCAACTTTGCCAAATCCAC
AATTTCAATGTCAAAAGATCACAGCTTCATGGCAAATTTGTACATCGCTA
CTCTGCCATTATGATTTCCGTTTTGTGATGCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062352-exon-scaffold_363-1575043694:74450..74540 | TCONS_00062352-exon-scaffold_363-1575043694:74450..74540 | Clytia hemisphaerica | exon |
| TCONS_00062352-exon-scaffold_363-1575043694:72762..72896 | TCONS_00062352-exon-scaffold_363-1575043694:72762..72896 | Clytia hemisphaerica | exon |
| TCONS_00062352-exon-scaffold_363-1575043694:71356..71959 | TCONS_00062352-exon-scaffold_363-1575043694:71356..71959 | Clytia hemisphaerica | exon |
| TCONS_00062352-exon-scaffold_363-1510915933:74450..74540 | TCONS_00062352-exon-scaffold_363-1510915933:74450..74540 | Clytia hemisphaerica | exon |
| TCONS_00062352-exon-scaffold_363-1510915933:72762..72896 | TCONS_00062352-exon-scaffold_363-1510915933:72762..72896 | Clytia hemisphaerica | exon |
| TCONS_00062352-exon-scaffold_363-1510915933:71356..71959 | TCONS_00062352-exon-scaffold_363-1510915933:71356..71959 | Clytia hemisphaerica | exon |
| TCONS_00062352-exon-scaffold_363-1491911889:74450..74540 | TCONS_00062352-exon-scaffold_363-1491911889:74450..74540 | Clytia hemisphaerica | exon |
| TCONS_00062352-exon-scaffold_363-1491911889:72762..72896 | TCONS_00062352-exon-scaffold_363-1491911889:72762..72896 | Clytia hemisphaerica | exon |
| TCONS_00062352-exon-scaffold_363-1491911889:71356..71959 | TCONS_00062352-exon-scaffold_363-1491911889:71356..71959 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_363 | supercontig | scaffold_363:71356..74540 - |
Blast
BLAST of TCONS_00062352 vs. Swiss-Prot (Human)
Match: FUT11 (Alpha-(1,3)-fucosyltransferase 11 OS=Homo sapiens GN=FUT11 PE=1 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.978e-22 Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 1
Query: 340 QNGRHPTIIWWTNSFYPHDEKDTI-LQCPRGPCHVTSNREYYWSNTTRAFVFYGTSFRANDLPLPRLPHHEWALIHEESPKNNWILSDSLGIR 615
+ G P ++WW+ +PH D+ ++C RG C + NR + TRA +FYGT FRA+ PLPRL H WAL+HEESP NN++LS GIR
Sbjct: 71 EAGDLPVLLWWSPGLFPHFPGDSERIECARGACVASRNRRALRDSRTRALLFYGTDFRASAAPLPRLAHQSWALLHEESPLNNFLLSHGPGIR 163
The following BLAST results are available for this feature:
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