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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00062324 ID=TCONS_00062324|Name=TCONS_00062324|organism=Clytia hemisphaerica|type=transcript|length=2198bp
atattgtactctttttaaccaatcagattgcagatattttttggatcgcc
gataacaGGAAATAAAGATAAATCCAATACacaaataagaataaattaat
aagaatgaataagaaaaatgtatcaaattatccataaaaatgtttttcgc
taTTTCTTTGACCTCTCCTTTCTCATTACTGGGTAATTAAGTCTTTGCAT
TAATTTATAGCATTCTTGCTAGGCTGCAACTGGATGTACAGGGAGGAGTT
TGAATCAGGTAATCAAAAGCAGTTTATCCATCACCTAATTTTCAATTTAC
ACGCTACTCTCCTAAACGCTGTTGCagaaatattgttttttttcggAGAT
GTTATCATGATTAGTTGCTTGAAGTTTCATCCTCACTTTCATCACGTTGT
CTAATCTAGTTAACATTGTGAACAAAATGTTCCATTCAACTTCGTTAATA
AACGATCAAAGATtagagaaaagaaaatttattcaatGAGTCTTCGACTC
AAGTACAAATATCGATTCTGCACATGTCGACGTGAAACGATCGAATAGAT
TGTTTGTCGAAATATTGCAAACTTCCATTTTCACTATCCAAATATGACCA
GCTTTTCAATATGATAGGTTTTTTGAAAGATACTGCCAAATGATGAAAGA
AAGAAGCAATCTCATTTATTTGATCAATTCTCTGAATCAGGATGACTTCG
ACATAAATGGATGTCGATTTCTCCAACAAATCACCTGGCAAACTTTTCAA
TGATGAAGGGGTGACATGCACAGAAAGAAGTCCCGGTTCACAAGAAAATG
ATCTAGCACTACGACAAATGTCAATCTCTATTACATACTTCTCACCTAAA
GGTGTCTTTGATATCAGATGCATTTCTTCGTCACTGTAAGATGGTCTGCT
TACAGTAAGTGaacaaatgtttttaattttcaaggcATTTATTACATTGA
CAATATTTCGGATGTCTTTATAGTTATTCATAATGTTTAAGAATGCTGTT
TTTGGTAGTGGTGTTGGTAGAGTGAAGTTGCCACGTGATTCTTTAAACAA
AGTGAGAAATTCAATACAATCATTGTTAGTGGTGTCGATGAAGAAGGTAT
CTTCTTCATTAATCATATTTGTAGGTATGAAGAGTTTGGTATGAAGACTT
TGGAAGACTTTGGATACTTGGGATACTCCCTGAACCTGATCAGATGCTGC
TTCACCAATAGCAATTCCTTTCAGCATGATACGTGTTTCGTAGCTTAAGA
TCAGTTCATTAAATAacaaaaggaaaagttcattttcTCCACTCTTTAGC
ATTGTTGCAATTCCTACAATAGTTGGTCTACAACTCGTGAATTCTCTGTT
CGATTGAAAAGGTGCAAAATTTTCTGTCACACAAAGGTAGAGCGCAGTAA
GAAATTCTTGCAGAATAAGGTGACGGAATTGAAAAGTAACTTCACTGAAT
GTTGAGGTTTGATACTTTGAAATGAATCCGGTTTCCTCTAATGGTATTGG
GCATTTGAGAGATGCGATCTCGCTTTCATTAAAAACAACTTTATTCTGCA
TATATGTGGTTACAGACAGCTCCATCAAGCAAAACAGAATTTCAGCAACA
CTTTTATCTTTTACAATATCCATCACATTTGTGTAGGTcgatgaatattt
tttgaaatgatttcTAATGAAAACCACTGTTGTGAAAAAGTAAAGTTCTG
TCTGTGTCGTGATTGGACTTGTTATCAACTCTTCTTTgtaaggccaaaaa
aaaaagtagtcttgtttccggaaatcggccgggtgaacttttttttggaa
aaaaatatatctcacccggccgcaaatagaaaaaaacttttttttttgtg
caatcgaagaaaaaaaactttttttcaaactgaataTTTCAGACAAGTAA
GCTAAAGAACGCATTAAAAAAGACTCCAAAGTGGACaaagaagagaagaa
attaTTCAAGACGGTACTCCCAATATGCGACGAGTGCAAAGGTAACGGAA
AAAAAGTCATGAAGAGGGGTCCAATCCAAACCGCCAAAGCAAACAAACAG
CGAGCTCGTCGCAATAAAAAAGATACataaagagtttattttccttttta
cgattttacgatccatttaacgattgtattcaaagatttacGTATGTcac
ttgtgttttgaaaaagaaaatcttctgtCACAAATGTTTTCTACTTTC Run BLAST on NCBI protein sequence of TCONS_00062324-protein >TCONS_00062324-protein ID=TCONS_00062324-protein|Name=TCONS_00062324-protein|organism=Clytia hemisphaerica|type=polypeptide|length=503bp
MTFFPLPLHSSHIGSTVLNNFFSSLSTLESFLMRSLAYLSEIFSLKKSFF
SSIAQKKKFFSICGRVRYIFFQKKVHPADFRKQDYFFFWPYKEELITSPI
TTQTELYFFTTVVFIRNHFKKYSSTYTNVMDIVKDKSVAEILFCLMELSV
TTYMQNKVVFNESEIASLKCPIPLEETGFISKYQTSTFSEVTFQFRHLIL
QEFLTALYLCVTENFAPFQSNREFTSCRPTIVGIATMLKSGENELFLLLF
NELILSYETRIMLKGIAIGEAASDQVQGVSQVSKVFQSLHTKLFIPTNMI
NEEDTFFIDTTNNDCIEFLTLFKESRGNFTLPTPLPKTAFLNIMNNYKDI
RNIVNVINALKIKNICSLTVSRPSYSDEEMHLISKTPLGEKYVIEIDICR
SARSFSCEPGLLSVHVTPSSLKSLPGDLLEKSTSIYVEVILIQRIDQINE
IASFFHHLAVSFKKPIILKSWSYLDSENGSLQYFDKQSIRSFHVDMCRID
ICT Run BLAST on NCBI transcript from alignment at scaffold_362:1031387..1033584 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00062324 ID=TCONS_00062324|Name=TCONS_00062324|organism=Clytia hemisphaerica|type=transcript|length=2198bp|location=Sequence derived from alignment at scaffold_362:1031387..1033584 (Clytia hemisphaerica)
GAAAGTAGAAAACATTTGTGacagaagattttctttttcaaaacacaagt
gACATACgtaaatctttgaatacaatcgttaaatggatcgtaaaatcgta
aaaaggaaaataaactctttatGTATCTTTTTTATTGCGACGAGCTCGCT
GTTTGTTTGCTTTGGCGGTTTGGATTGGACCCCTCTTCATGACTTTTTTT
CCGTTACCTTTGCACTCGTCGCATATTGGGAGTACCGTCTTGAAtaattt
cttctcttctttGTCCACTTTGGAGTCTTTTTTAATGCGTTCTTTAGCTT
ACTTGTCTGAAAtattcagtttgaaaaaaagttttttttcttcgattgca
caaaaaaaaaagtttttttctatttgcggccgggtgagatatattttttt
ccaaaaaaaagttcacccggccgatttccggaaacaagactacttttttt
tttggccttacAAAGAAGAGTTGATAACAAGTCCAATCACGACACAGACA
GAACTTTACTTTTTCACAACAGTGGTTTTCATTAgaaatcatttcaaaaa
atattcatcgACCTACACAAATGTGATGGATATTGTAAAAGATAAAAGTG
TTGCTGAAATTCTGTTTTGCTTGATGGAGCTGTCTGTAACCACATATATG
CAGAATAAAGTTGTTTTTAATGAAAGCGAGATCGCATCTCTCAAATGCCC
AATACCATTAGAGGAAACCGGATTCATTTCAAAGTATCAAACCTCAACAT
TCAGTGAAGTTACTTTTCAATTCCGTCACCTTATTCTGCAAGAATTTCTT
ACTGCGCTCTACCTTTGTGTGACAGAAAATTTTGCACCTTTTCAATCGAA
CAGAGAATTCACGAGTTGTAGACCAACTATTGTAGGAATTGCAACAATGC
TAAAGAGTGGAgaaaatgaacttttccttttgtTATTTAATGAACTGATC
TTAAGCTACGAAACACGTATCATGCTGAAAGGAATTGCTATTGGTGAAGC
AGCATCTGATCAGGTTCAGGGAGTATCCCAAGTATCCAAAGTCTTCCAAA
GTCTTCATACCAAACTCTTCATACCTACAAATATGATTAATGAAGAAGAT
ACCTTCTTCATCGACACCACTAACAATGATTGTATTGAATTTCTCACTTT
GTTTAAAGAATCACGTGGCAACTTCACTCTACCAACACCACTACCAAAAA
CAGCATTCTTAAACATTATGAATAACTATAAAGACATCCGAAATATTGTC
AATGTAATAAATgccttgaaaattaaaaacatttgttCACTTACTGTAAG
CAGACCATCTTACAGTGACGAAGAAATGCATCTGATATCAAAGACACCTT
TAGGTGAGAAGTATGTAATAGAGATTGACATTTGTCGTAGTGCTAGATCA
TTTTCTTGTGAACCGGGACTTCTTTCTGTGCATGTCACCCCTTCATCATT
GAAAAGTTTGCCAGGTGATTTGTTGGAGAAATCGACATCCATTTATGTCG
AAGTCATCCTGATTCAGAGAATTGATCAAATAAATGAGATTGCTTCTTTC
TTTCATCATTTGGCAGTATCTTTCAAAAAACCTATCATATTGAAAAGCTG
GTCATATTTGGATAGTGAAAATGGAAGTTTGCAATATTTCGACAAACAAT
CTATTCGATCGTTTCACGTCGACATGTGCAGAATCGATATTTGTACTTGA
GTCGAAGACTCattgaataaattttcttttctctaATCTTTGATCGTTTA
TTAACGAAGTTGAATGGAACATTTTGTTCACAATGTTAACTAGATTAGAC
AACGTGATGAAAGTGAGGATGAAACTTCAAGCAACTAATCATGATAACAT
CTccgaaaaaaaacaatatttctGCAACAGCGTTTAGGAGAGTAGCGTGT
AAATTGAAAATTAGGTGATGGATAAACTGCTTTTGATTACCTGATTCAAA
CTCCTCCCTGTACATCCAGTTGCAGCCTAGCAAGAATGCTATAAATTAAT
GCAAAGACTTAATTACCCAGTAATGAGAAAGGAGAGGTCAAAGAAAtagc
gaaaaacatttttatggataatttgatacatttttcttattcattcttat
taatttattcttatttgtGTATTGGATTTATCTTTATTTCCtgttatcgg
cgatccaaaaaatatctgcaatctgattggttaaaaagagtacaatat Coding sequence (CDS) from alignment at scaffold_362:1031387..1033584 >TCONS_00062324 ID=TCONS_00062324|Name=TCONS_00062324|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_362:1031387..1033584 (Clytia hemisphaerica)
ATGACTTTTTTTCCGTTACCTTTGCACTCGTCGCATATTGGGAGTACCGT
CTTGAAtaatttcttctcttctttGTCCACTTTGGAGTCTTTTTTAATGC
GTTCTTTAGCTTACTTGTCTGAAAtattcagtttgaaaaaaagttttttt
tcttcgattgcacaaaaaaaaaagtttttttctatttgcggccgggtgag
atatatttttttccaaaaaaaagttcacccggccgatttccggaaacaag
actacttttttttttggccttacAAAGAAGAGTTGATAACAAGTCCAATC
ACGACACAGACAGAACTTTACTTTTTCACAACAGTGGTTTTCATTAgaaa
tcatttcaaaaaatattcatcgACCTACACAAATGTGATGGATATTGTAA
AAGATAAAAGTGTTGCTGAAATTCTGTTTTGCTTGATGGAGCTGTCTGTA
ACCACATATATGCAGAATAAAGTTGTTTTTAATGAAAGCGAGATCGCATC
TCTCAAATGCCCAATACCATTAGAGGAAACCGGATTCATTTCAAAGTATC
AAACCTCAACATTCAGTGAAGTTACTTTTCAATTCCGTCACCTTATTCTG
CAAGAATTTCTTACTGCGCTCTACCTTTGTGTGACAGAAAATTTTGCACC
TTTTCAATCGAACAGAGAATTCACGAGTTGTAGACCAACTATTGTAGGAA
TTGCAACAATGCTAAAGAGTGGAgaaaatgaacttttccttttgtTATTT
AATGAACTGATCTTAAGCTACGAAACACGTATCATGCTGAAAGGAATTGC
TATTGGTGAAGCAGCATCTGATCAGGTTCAGGGAGTATCCCAAGTATCCA
AAGTCTTCCAAAGTCTTCATACCAAACTCTTCATACCTACAAATATGATT
AATGAAGAAGATACCTTCTTCATCGACACCACTAACAATGATTGTATTGA
ATTTCTCACTTTGTTTAAAGAATCACGTGGCAACTTCACTCTACCAACAC
CACTACCAAAAACAGCATTCTTAAACATTATGAATAACTATAAAGACATC
CGAAATATTGTCAATGTAATAAATgccttgaaaattaaaaacatttgttC
ACTTACTGTAAGCAGACCATCTTACAGTGACGAAGAAATGCATCTGATAT
CAAAGACACCTTTAGGTGAGAAGTATGTAATAGAGATTGACATTTGTCGT
AGTGCTAGATCATTTTCTTGTGAACCGGGACTTCTTTCTGTGCATGTCAC
CCCTTCATCATTGAAAAGTTTGCCAGGTGATTTGTTGGAGAAATCGACAT
CCATTTATGTCGAAGTCATCCTGATTCAGAGAATTGATCAAATAAATGAG
ATTGCTTCTTTCTTTCATCATTTGGCAGTATCTTTCAAAAAACCTATCAT
ATTGAAAAGCTGGTCATATTTGGATAGTGAAAATGGAAGTTTGCAATATT
TCGACAAACAATCTATTCGATCGTTTCACGTCGACATGTGCAGAATCGAT
ATTTGTACTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00062324-exon-scaffold_362-1491911889:1031387..1033584 | TCONS_00062324-exon-scaffold_362-1491911889:1031387..1033584 | Clytia hemisphaerica | exon |
| TCONS_00062324-exon-scaffold_362-1510915933:1031387..1033584 | TCONS_00062324-exon-scaffold_362-1510915933:1031387..1033584 | Clytia hemisphaerica | exon |
| TCONS_00062324-exon-scaffold_362-1575043694:1031387..1033584 | TCONS_00062324-exon-scaffold_362-1575043694:1031387..1033584 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_362 | supercontig | scaffold_362:1031387..1033584 . |
Blast
The following BLAST results are available for this feature:
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